NO02G05240, NO02G05240 (gene) Nannochloropsis oceanica

Overview
NameNO02G05240
Unique NameNO02G05240
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length722
Alignment locationchr2:1402085..1402806 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1402085..1402806 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO02G05240 vs. NCBI_GenBank
Match: XP_005855553.1 (hypothetical protein NGA_0593600 [Nannochloropsis gaditana CCMP526] >EKU20802.1 hypothetical protein NGA_0593600 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 136.3 bits (342), Expect = 1.000e-28
Identity = 71/126 (56.35%), Postives = 93/126 (73.81%), Query Frame = 0 
Query:   68 AAGATASNQTKALQQLDHLQDCILDSVRVASEAIRHLSTPETLDEESVQKAYDSYLEIMQEIHEGLASRASWIKHYVPYNRHTGDLRQEVRVLEMRLGWLKAEAKRLGY-PEGGWKESGGEGEAGG 193
            AA  +A  Q + L+ LD LQD +L++V +AS+ +R LS PE  +EE VQKAY SYLE+M+E+HEGLASRA+W+K+YVPY R+T +LR+EVR+ EMR+ WLK EA+R GY  EG   E  G G  GG
Sbjct:   68 AAKNSAFQQAQELENLDKLQDRLLEAVGIASQTLRQLSNPEEFEEEEVQKAYQSYLELMREVHEGLASRAAWVKNYVPYRRNTKELRREVRIKEMRVVWLKEEARRWGYKDEGARGEEEGIGRPGG 193
[Close]
BLAST of NO02G05240 vs. NCBI_GenBank
Match: EWM30125.1 (hypothetical protein Naga_100541g2 [Nannochloropsis gaditana])

HSP 1 Score: 134.4 bits (337), Expect = 3.900e-28
Identity = 69/125 (55.20%), Postives = 94/125 (75.20%), Query Frame = 0 
Query:   68 AAGATASNQTKALQQLDHLQDCILDSVRVASEAIRHLSTPETLDEESVQKAYDSYLEIMQEIHEGLASRASWIKHYVPYNRHTGDLRQEVRVLEMRLGWLKAEAKRLGYPEGGWKESGGEGEAGG 193
            AA  +A  Q + L+ LD LQD +L++V +AS+ +R LS PE  +EE VQKAY SYLE+M+E+HEGLASRA+W+K+YVPY R+T +LR+EVR+ EMR+ WLK EA+R GY +   +E+ GE E  G
Sbjct:   62 AAKNSAFQQAQELENLDKLQDRLLEAVGIASQTLRQLSNPEEFEEEEVQKAYQSYLELMREVHEGLASRAAWVKNYVPYRRNTKELRREVRIKEMRVVWLKEEARRWGYKD---EEARGEEEGIG 183
The following BLAST results are available for this feature:
BLAST of NO02G05240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005855553.11.000e-2856.35hypothetical protein NGA_0593600 [Nannochloropsis ... [more]
EWM30125.13.900e-2855.20hypothetical protein Naga_100541g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL018nonsL018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR003ngnoR003Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007239NSK007239Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G05240.1NO02G05240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100541g2gene527Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G05240.1NO02G05240.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G05240 ID=NO02G05240|Name=NO02G05240|organism=Nannochloropsis oceanica|type=gene|length=722bp
ATGACAAGCCCACTACCCGCCAGCGACGACGGTAGCGCGTCAATGGTCTT
TGACGACGATCAGAGCGAGGCGGAGAAGGAACAACTGTTGGGGAAAGGAA
GAGAAGCAGGACAAGGAGGGGAGCACGAGGCGGAGAGCGATGAAGCTTCC
GTCCCGTCACAGGTGCTCGAGGACGAGGATAGCAATTGTAGCAGCATGGG
GGCGGCCGGTGCCACCGCGTCTAACCAAACGAAAGCTTTACAGCAGCTGG
ATCATCTGCAAGACgtgagtcttgcctgggcggtgggggctgtccgtaca
ttcaatcttctttcttgcctcttcccaccaaggccttccttctcacctcc
ctctccttctcaacaacacaacaacagTGCATCCTCGACTCCGTGCGCGT
TGCTTCCGAAGCAATCCGCCATCTGAGTACTCCCGAAACACTCGACGAAG
AAAGCGTCCAGAAGGCCTATGACTCCTATCTAGAGATAATGCAAGAAATC
CACGAAGGGCTTGCGTCACGCGCCTCGTGGATTAAACATTACGTCCCTTA
TAATCGGCACACAGGGGATCTAAGGCAGGAGGTACGTGTGTTGGAGATGC
GCTTGGGGTGGTTAAAGGCGGAAGCTAAAAGATTGGGTTATCCGGAGGGA
GGGTGGAAGGAGAGCGGGGGGGAGGGAGAGGCGGGAGGGGGGATGGAGAA
GGAGGATGCGGAAGGAAGATGA
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protein sequence of NO02G05240.1

>NO02G05240.1-protein ID=NO02G05240.1-protein|Name=NO02G05240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=203bp
MTSPLPASDDGSASMVFDDDQSEAEKEQLLGKGREAGQGGEHEAESDEAS
VPSQVLEDEDSNCSSMGAAGATASNQTKALQQLDHLQDCILDSVRVASEA
IRHLSTPETLDEESVQKAYDSYLEIMQEIHEGLASRASWIKHYVPYNRHT
GDLRQEVRVLEMRLGWLKAEAKRLGYPEGGWKESGGEGEAGGGMEKEDAE
GR*
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Synonyms
Publications