NO02G04890.1, NO02G04890.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04890.1
Unique NameNO02G04890.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length981
Alignment locationchr2:1317472..1318862 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1317472..1318862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G04890.1 vs.
Match: EWM30192.1 (ApaG domain protein [Nannochloropsis gaditana])

HSP 1 Score: 315.1 bits (806), Expect = 2.600e-82
Identity = 179/273 (65.57%), Postives = 212/273 (77.66%), Query Frame = 0 
Query:    1 MVHVISKDHSRLVKCLYRQLLRDARRVKHSRAPFLFLQERPSRERYSHLWEVTPDHDARLLDAFLPSYLRHELTTCELKSHEMERIVKANFRRFRNLGVAGASASNSGGSGSSREFATLSPSN-----TSSSSSSSGSSRRGSRNRSGGASSAASASPPPTLDEVIDDCMTLTRLMSEQLRLFECTSVTDSFGVRVIATATAAVDEQQRQEQQQQHH-QSSSSTPQSPPHFFFYNIRVENRNRKATVQLVGRHWVIQDNEGKESDSVPKGSIG 268
            M H ISKDHSRLV CLYR LLRDARRV+HSRAPF+FLQERPSRERYSHLWE+TPD+DA +LD  LPSYLRHELTTCELK+ ++ERI+KANFRRFR+LG        S  S + R    L PS      T S S SSG SRR S +R  GA+   +  PPPTLD+V+DD M LTR M+EQL LFE TSVT+S+G+RVIATAT A+D+QQ+Q+QQQQ   Q S +    PP+FFFY IRVENRNR+A+VQL+GRHW+IQD +G+E+DSVPKGSIG
Sbjct:    1 MAHTISKDHSRLVFCLYRLLLRDARRVRHSRAPFVFLQERPSRERYSHLWEITPDYDANVLDNLLPSYLRHELTTCELKAQDLERIIKANFRRFRSLGT-------SEESPNPRHQVPL-PSGPPATPTESPSHSSGHSRRRS-SRMRGAN--ITPIPPPTLDQVLDDTMALTRTMAEQLSLFESTSVTESYGIRVIATATTALDQQQQQQQQQQQQMQQSGAVQPPPPYFFFYTIRVENRNRRASVQLMGRHWIIQDEQGRETDSVPKGSIG 262
The following BLAST results are available for this feature:
BLAST of NO02G04890.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30192.12.600e-8265.57ApaG domain protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04890NO02G04890Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04890.1NO02G04890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04890.1.cds1NO02G04890.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04890.1.cds2NO02G04890.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04890.1.cds3NO02G04890.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04890.1 ID=NO02G04890.1|Name=NO02G04890.1|organism=Nannochloropsis oceanica|type=mRNA|length=981bp
ATGGTGCACGTCATCTCCAAGGACCATTCGCGTTTGGTCAAATGCCTCTA
TCGGCAGCTGCTTAGGGACGCCCGCAGGGTTAAGCATTCGCGGGCGCCTT
TCCTCTTCCTGCAGGAGCGCCCAAGTAGGGAAAGGTATTCGCACTTGTGG
GAAGTGACGCCCGACCACGATGCCAGGCTCCTAGACGCATTCCTGCCATC
ATACCTCCGGCACGAGCTAACAACATGCGAACTCAAGTCACATGAGATGG
AACGCATCGTCAAGGCCAATTTCCGTCGCTTCCGCAACCTGGGCGTCGCC
GGGGCCTCTGCCTCTAACAGTGGCGGCAGCGGTAGCAGCAGAGAGTTCGC
AACACTTTCACCTTCCAATACCAGTAGCAGTAGTAGTAGTAGTGGCAGCA
GCAGGCGGGGCAGCAGGAACCGGAGCGGGGGCGCTTCTTCGGCGGCTTCT
GCTTCTCCGCCTCCGACGCTGGACGAAGTCATAGATGATTGCATGACTTT
GACGCGCCTCATGTCCGAGCAATTACGTTTGTTCGAATGCACGAGCGTCA
CGGACTCCTTTGGAGTGCGTGTCATTGCTACGGCCACCGCCGCCGTCGAT
GAGCAGCAGCGGCAGGAGCAGCAGCAACAACATCATCAAAGCTCTTCTTC
CACCCCGCAATCCCCTCCCCACTTCTTCTTCTATAACATCCGCGTCGAGA
ATAGAAATCGGAAGGCGACGGTGCAGCTAGTGGGGAGACATTGGGTTATT
CAGGATAATGAGGGAAAGGAGAGTGACTCGGTGCCCAAGGGAAGCATTGG
GGTTGTGGGTCACGAGCCCGTCTTGCGACCAGGGCAAACGATAGTGTATA
TGAGCGGTGCCAAGCTGCCCACCCCATACGGCAGCATGCAGGGCTCCTTT
CAAATGGTCAAGAAGATGGGGGAAGGCAACAGTGTACCTGACAAGTTTGA
CGCACGGGTCAGCCCGTTTGTTCTCAAGTAG
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protein sequence of NO02G04890.1

>NO02G04890.1-protein ID=NO02G04890.1-protein|Name=NO02G04890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp
MVHVISKDHSRLVKCLYRQLLRDARRVKHSRAPFLFLQERPSRERYSHLW
EVTPDHDARLLDAFLPSYLRHELTTCELKSHEMERIVKANFRRFRNLGVA
GASASNSGGSGSSREFATLSPSNTSSSSSSSGSSRRGSRNRSGGASSAAS
ASPPPTLDEVIDDCMTLTRLMSEQLRLFECTSVTDSFGVRVIATATAAVD
EQQRQEQQQQHHQSSSSTPQSPPHFFFYNIRVENRNRKATVQLVGRHWVI
QDNEGKESDSVPKGSIGVVGHEPVLRPGQTIVYMSGAKLPTPYGSMQGSF
QMVKKMGEGNSVPDKFDARVSPFVLK*
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mRNA from alignment at chr2:1317472..1318862-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04890.1 ID=NO02G04890.1|Name=NO02G04890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1391bp|location=Sequence derived from alignment at chr2:1317472..1318862- (Nannochloropsis oceanica)
ATGGTGCACGTCATCTCCAAGGACCATTCGCGTTTGGTCAAATGCCTCTA
TCGGCAGCTGCTTAGGGACGCCCGCAGGGTTAAGCATTCGCGGGCGCCTT
TCCTCTTCCTGCAGGAGCGCCCAAGTAGGGAAAGGTATTCGCACTTGTGG
GAAGTGACGCCCGACCACGATGCCAGGCTCCTAGACGCATTCCTGCCATC
ATACCTCCGGCACGAGCTAACAACATGCGAACTCAAGTCACATGTAAGGA
AGAGGTTCAAGGACAGGGGGCTCACATTCCTTTTCTGCCTCAAAGATGAC
CATAAAAATTTGAGACCCAACAACATATTTGCAGTGAGACGTCCACTATC
ACGGGTTGGAAGAACATCTCTACGACCCTCTGGAATCCCTTATCTGAGAC
TTCTTCATTCGTTTCCCGCTCTTATCAAAACAACGACCTCACAGGAGATG
GAACGCATCGTCAAGGCCAATTTCCGTCGCTTCCGCAACCTGGGCGTCGC
CGGGGCCTCTGCCTCTAACAGTGGCGGCAGCGGTAGCAGCAGAGAGTTCG
CAACACTTTCACCTTCCAATACCAGTAGCAGTAGTAGTAGTAGTGGCAGC
AGCAGGCGGGGCAGCAGGAACCGGAGCGGGGGCGCTTCTTCGGCGGCTTC
TGCTTCTCCGCCTCCGACGCTGGACGAAGTCATAGATGATTGCATGACTT
TGACGCGCCTCATGTCCGAGCAATTACGTTTGTTCGAATGCACGAGCGTC
ACGGACTCCTTTGGAGTGCGTGTCATTGCTACGGCCACCGCCGCCGTCGA
TGAGCAGCAGCGGCAGGAGCAGCAGCAACAACATCATCAAAGCTCTTCTT
CCACCCCGCAATCCCCTCCCCACTTCTTCTTCTATAACATCCGCGTCGAG
AATAGAAATCGGAAGGCGACGGTGCAGCTAGTGGGGAGACATTGGGTTAT
TCAGGATAATGAGGGAAAGGAGAGTGACTCGGTGCCCAAGGGAAGCATTG
GTATGTTAGACTTAATGCCTGATGTGATCACCCATGTATACCTCAGACTT
CCGTTGAATGTCTGAAATGTTTGTCGTACACATAAAATGAAGGCCTGTGA
TATGGGCAGAACGCGGAAAGCTTTATCACTTTGACTTCACAAGTCTTTTC
GCTTTTTATGGTCCTAACTTATGCACGTCCCCCGTCCATCCTCCCTTCTT
CACACGCAGGGGTTGTGGGTCACGAGCCCGTCTTGCGACCAGGGCAAACG
ATAGTGTATATGAGCGGTGCCAAGCTGCCCACCCCATACGGCAGCATGCA
GGGCTCCTTTCAAATGGTCAAGAAGATGGGGGAAGGCAACAGTGTACCTG
ACAAGTTTGACGCACGGGTCAGCCCGTTTGTTCTCAAGTAG
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Coding sequence (CDS) from alignment at chr2:1317472..1318862-

>NO02G04890.1 ID=NO02G04890.1|Name=NO02G04890.1|organism=Nannochloropsis oceanica|type=CDS|length=981bp|location=Sequence derived from alignment at chr2:1317472..1318862- (Nannochloropsis oceanica)
ATGGTGCACGTCATCTCCAAGGACCATTCGCGTTTGGTCAAATGCCTCTA
TCGGCAGCTGCTTAGGGACGCCCGCAGGGTTAAGCATTCGCGGGCGCCTT
TCCTCTTCCTGCAGGAGCGCCCAAGTAGGGAAAGGTATTCGCACTTGTGG
GAAGTGACGCCCGACCACGATGCCAGGCTCCTAGACGCATTCCTGCCATC
ATACCTCCGGCACGAGCTAACAACATGCGAACTCAAGTCACATGAGATGG
AACGCATCGTCAAGGCCAATTTCCGTCGCTTCCGCAACCTGGGCGTCGCC
GGGGCCTCTGCCTCTAACAGTGGCGGCAGCGGTAGCAGCAGAGAGTTCGC
AACACTTTCACCTTCCAATACCAGTAGCAGTAGTAGTAGTAGTGGCAGCA
GCAGGCGGGGCAGCAGGAACCGGAGCGGGGGCGCTTCTTCGGCGGCTTCT
GCTTCTCCGCCTCCGACGCTGGACGAAGTCATAGATGATTGCATGACTTT
GACGCGCCTCATGTCCGAGCAATTACGTTTGTTCGAATGCACGAGCGTCA
CGGACTCCTTTGGAGTGCGTGTCATTGCTACGGCCACCGCCGCCGTCGAT
GAGCAGCAGCGGCAGGAGCAGCAGCAACAACATCATCAAAGCTCTTCTTC
CACCCCGCAATCCCCTCCCCACTTCTTCTTCTATAACATCCGCGTCGAGA
ATAGAAATCGGAAGGCGACGGTGCAGCTAGTGGGGAGACATTGGGTTATT
CAGGATAATGAGGGAAAGGAGAGTGACTCGGTGCCCAAGGGAAGCATTGG
GGTTGTGGGTCACGAGCCCGTCTTGCGACCAGGGCAAACGATAGTGTATA
TGAGCGGTGCCAAGCTGCCCACCCCATACGGCAGCATGCAGGGCTCCTTT
CAAATGGTCAAGAAGATGGGGGAAGGCAACAGTGTACCTGACAAGTTTGA
CGCACGGGTCAGCCCGTTTGTTCTCAAGTAG
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Synonyms
Publications