NO02G04580, NO02G04580 (gene) Nannochloropsis oceanica

Overview
NameNO02G04580
Unique NameNO02G04580
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1799
Alignment locationchr2:1238997..1240795 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1238997..1240795 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO02G04580 vs. NCBI_GenBank
Match: EWM30249.1 (hypothetical protein Naga_100003g11 [Nannochloropsis gaditana])

HSP 1 Score: 288.5 bits (737), Expect = 2.000e-74
Identity = 165/241 (68.46%), Postives = 187/241 (77.59%), Query Frame = 0 
Query:    1 MQRLWTALALCSIMPGATAFVLPVTGPCMRETMTMKASLSSKSLSRADMLQSAGGALFGAAVLSTVAPQASNAESTLASRKVLYFRYAPRIKNARDYLATDFKSALAKKDWAAVAAAYEIQKQAPDSSMRSNPQRFTNKFERDLYSPMKIFSQSQSEKGASPKLAALLKAEGELEEALDRLQLVAKGDLKPIKKGGGGLFGFGGAEAPADKYTGMSQEKMANALYADAKTAFNAWVDVTNK 242
            M R+ T LAL   + G  AF  P     + +     A   S++L RAD+ + AG A  GAA+L    P+AS AE+TLASRKVLYFRYAPRIK+ARD+LA DFK+AL KKDWAAVAAAYEI+KQAPDSSMR+NPQRF NKFE+DLYSPM+IFSQS SEKGASPKL ALLKAEGELE ALDRLQLVAKGDLKP KK GG L GFGG     DKY G++QEKMA AL+ADAKTAFNAWV+V NK
Sbjct:   30 MLRVGTLLALGCSLLGTNAFTFPSMSCNVFQRHEKNAMKVSEALYRADVFRFAGSAFVGAALL-IGRPEASEAETTLASRKVLYFRYAPRIKSARDFLAKDFKAALDKKDWAAVAAAYEIEKQAPDSSMRNNPQRFINKFEKDLYSPMRIFSQSLSEKGASPKLTALLKAEGELEAALDRLQLVAKGDLKPPKKDGGFL-GFGGGAPVEDKYAGLNQEKMAKALFADAKTAFNAWVEVVNK 268
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BLAST of NO02G04580 vs. NCBI_GenBank
Match: XP_005833533.1 (hypothetical protein GUITHDRAFT_152403 [Guillardia theta CCMP2712] >EKX46553.1 hypothetical protein GUITHDRAFT_152403 [Guillardia theta CCMP2712])

HSP 1 Score: 72.4 bits (176), Expect = 2.300e-9
Identity = 63/215 (29.30%), Postives = 101/215 (46.98%), Query Frame = 0 
Query:   44 LSRADMLQSAGGA--LFGAAVLSTVAPQASNAESTLASRKVLYFRYAPRIKNARDYLATDFKSALAKKDWAAVAAAYEIQKQAPDSSMRSN--PQRFTNKFERDLYSPMKIFSQSQSEKGASPKLAALLKAEGELEEALDRLQLVAKGDLKPIKKGGGGLFGFGGAEAPADKYTGMSQEKMANALYADAKTAFNAWVDVTNKAI-IEVNKFEPLP 254
            + R DML   G A  +FGA     + PQ S A+ TL S K  YFRYAPRI+  RD+   + +S + K +W  +A+ YE+   A + S + +       +  ER L+ PM++F  S  EKG  PK   +     EL  A D+++                       EA   K      ++ A A + + +  FN ++ + NK + ++V +F+ +P
Sbjct:   66 IGRRDMLVRTGLAPLIFGA-----LFPQNSFADMTLNSFKRAYFRYAPRIEEGRDFFVLEVRSLIEKGEWDKIASLYELTSVAQEGSSKKSIGLDIKQSALERTLFLPMQVFITSFEEKGTGPKQRKMNAQVDELILACDKIK-----------------------EAVEKK-----DKQAALAAWDEGREHFNKYLRIANKGMTMQVRQFDLIP 247
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BLAST of NO02G04580 vs. NCBI_GenBank
Match: CBN74699.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 66.6 bits (161), Expect = 1.200e-7
Identity = 46/145 (31.72%), Postives = 76/145 (52.41%), Query Frame = 0 
Query:  101 DFKSALAKKDWAAVAAAYEIQKQA-PDSSMRSNPQRFTNKFERDLYSPMKIFSQSQSEKGASPKLAALLKAEGELEEALDRLQLVAKGDLKPIKKGGGGLFGFGGAEAPADKYTGMSQEKMANALYADAKTAFNAWVDVTNKAII 245
            D + A+A++DW  V A +E+   A  DSS  +  Q  +++ +R+L+SP+ +++QS S KG   KL ALL  E +LE+A+  L+  A G  K +K+                   G SQ + A A +   + A   +V+V NK ++
Sbjct:    7 DLQKAIAEEDWPKVLAYFEVVNTARSDSSRPAMYQSSSSRMQRELFSPLSVWAQSMSIKGTGAKLRALLSQEEKLEQAMASLEKAASG--KSLKE-------------------GESQGQAAKAAWEAGRDALQEYVEVANKGMV 130
The following BLAST results are available for this feature:
BLAST of NO02G04580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM30249.12.000e-7468.46hypothetical protein Naga_100003g11 [Nannochlorops... [more]
XP_005833533.12.300e-929.30hypothetical protein GUITHDRAFT_152403 [Guillardia... [more]
CBN74699.11.200e-731.72expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007133NSK007133Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G04580.1NO02G04580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575144gene_1052Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100003g11gene447Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G04580.1NO02G04580.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G04580 ID=NO02G04580|Name=NO02G04580|organism=Nannochloropsis oceanica|type=gene|length=1799bp
ATGCAGCGCCTTTGGACTGCTTTGGCACTCTGCAGCATCATGCCTGGGGC
GACGGCATTCGTGTTGCCTGTGACCGGGCCGTGCATGCGCGAGgtacgtg
tgtgttgtaaaaagcgaggcaggggaggggttgacgacgacgaattgaaa
ctcgccccgctaacaacttgaccctaaagtacgcaagctacttgataagg
cgtcattgattgcgcgattattaatgcatgaaagcttgcccttaacagat
cactcctttccaaagcatttagctttggtgatgacacaaccgtaagtagc
gacacccgataccaaccatcgaccatgtcctctccctcacctttttacag
ACAATGACGATGAAGGCCTCTTTGTCTTCTAAGTCCTTGTCTCGGGCGGA
TATGCTCCAATCGGCGGGCGGCGCCTTGTTTGGCGCGGCTGTCTTGTCAA
CGGTGGCCCCGCAAGCGTCGAATGCTGAGAGCACACTGGCGTCCAGAAAG
GTGTTATACTTCCGGgtaagtcacgtttcaatctagcttgtgccgtgtct
aatctggggaaggccttgctctatttgatggccctgtctgtccaagagag
tagggtgctgtaaacttcgcacgtttgtattgttgctccccggcatgttt
ttaagctatgggtaagtggcaaaagcaggaacgcctgccccggttatctg
ccggctgataatgctggattgtgtgcttgtggccttgatctgggtgtgat
tgacaaatgctcggttgttgcagacgcaaatgtacattttcgtcgcgcta
agttatttattcctgtcatccatactgaaaagcctcctaactgaccatcc
cctccctccctccctccctccccccttcccttcctccctcttcccctctc
caaccagTACGCTCCCCGCATCAAGAATGCCCGCGATTACCTCGCCACTG
ATTTTAAGTCGGCGTTGGCCAAGAAGGACTGGGCAGCCGTTGCTGCAGCG
TATGAGATCCAGAAACAGGCCCCGGACTCAAGCATGCGCTCCAATCCCCA
ACGATTTACGAACAAGTTCGAGCGgtgaggaaggaggggggacagctagt
gaaggaagaatggagcgggacacttaatcgttgcgattgatgtccagata
cctttatccttctcgctggcaggaacgcacgctaacgccgcacccatgcg
ttcatcatatccgcctttctttttcctctccaatccattcacacccaaca
gGGACCTCTACAGCCCCATGAAGATCTTCTCCCAATCCCAAAGCGAAAAG
GGCGCTTCGCCCAAGCTTGCGGCCTTGCTGAAAGCCGAGGGTGAGTTGGA
AGAAGCCTTGGATCGCTTGCAGCTCGTTGCCAAGGGTGATTTGAAACCCA
TTAAGAAGGGGGGAGGAGGGCTGTTCGGATTTGGGGGTGCGGAGGCGCCC
GCTGATAAGTACACGGGGATGAGCCAGGAGAAGATGGCGAATGCTTTGTA
TGCAGATGCAAAGACAGCATTCAATGCGTGGGTGGATGTGACGAACAAAG
gtatgttttgagatcagggagagtggaagggttgcatggagtgcggtggt
ttttgaattatttttctcactttcttatccttcaaccatgctttgattgc
gtaaagatgggcacagaaatctttcatgttctgcatgttgcgattttggc
attttccattgtagtgcgaaactcgctctcactccctccccttttcttcg
ttcccatacagCTATCATCGAGGTGAATAAGTTCGAGCCGCTCCCTTAG
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protein sequence of NO02G04580.1

>NO02G04580.1-protein ID=NO02G04580.1-protein|Name=NO02G04580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MQRLWTALALCSIMPGATAFVLPVTGPCMRETMTMKASLSSKSLSRADML
QSAGGALFGAAVLSTVAPQASNAESTLASRKVLYFRYAPRIKNARDYLAT
DFKSALAKKDWAAVAAAYEIQKQAPDSSMRSNPQRFTNKFERDLYSPMKI
FSQSQSEKGASPKLAALLKAEGELEEALDRLQLVAKGDLKPIKKGGGGLF
GFGGAEAPADKYTGMSQEKMANALYADAKTAFNAWVDVTNKAIIEVNKFE
PLP*
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Synonyms
Publications