NO02G03990, NO02G03990 (gene) Nannochloropsis oceanica

Overview
NameNO02G03990
Unique NameNO02G03990
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3120
Alignment locationchr2:1088668..1091787 +

Link to JBrowse

Properties
Property NameValue
DescriptionUbiquitin-conjugating enzyme catalytic domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1088668..1091787 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Homology
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BLAST of NO02G03990 vs. NCBI_GenBank
Match: EWM30326.1 (ubiquitin-conjugating enzyme catalytic domain protein [Nannochloropsis gaditana])

HSP 1 Score: 442.2 bits (1136), Expect = 2.500e-120
Identity = 300/552 (54.35%), Postives = 365/552 (66.12%), Query Frame = 0 
Query:    1 MLRGLALPSRREVGPCLRTAETLGGLRTMRQGRRGENRDVQEFLEEAVTPRGQFGAXXXXXXXXXXXXXYERFIKAHKETVLTEEDKRFKTWSSWKDQLEDFKDDGQEDLTAAEEGYLGTV--MESEGFG--DNENNGDKAXXXXXXXXXXXXXXXXXXXXXSYFDWNEESLFIPNLPERNEEEGGFTTDKITGKDDVQLRVNKLLWRRLKLKARDMDLHVPSAFRRVKIVQKAMAEAREKMARD----PRKEERTMSVEKKEGKAVVTSLREDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIKEVARLNRARTVEAIEAEIGRLLVEGKMDLQMAQDERRARKKAAKARSVSKGEWDGDEXXXXXXXXXXXXXXXXXXXXXGMDDWSKIHMQDLEEALGEEIPTMDVHEEGFEAFREYAEQLIESGGVIEYRSTMADKYDREVSLPLPLATGRALKQALRRDQTALHETTLAP---------PAPMSQXXXXXXXYXAXXAFAWLALNKNLSMGDTTRTELSEAMASTLQRLREKPGRLE 536
            MLRG++LP   + GP   TA +LGGLR +RQG RG ++DVQEFLEEAVTPR   GA             YERFIK +KETVLTEEDKRFKTWS+WKDQLEDF++DGQEDL+  EEGYLG++  MES G G       G   XXXXXXXXX            SYFDW E SLFIP+L  R  +EGG  +D+I  +DD+QLR+NKLLWRRLKL+ARD+D HVP A+RR + VQ+AMAEAR + AR     P  +   + V+   G+  + ++RE +                                     DI+ V RLN+ART+EAIE EIGRL+VEGK+D++M +++ RA                   XXXXXXXXXXXXXXXXXXX   MDDW++IH+QDLEEA+GEE+PT+D  EEGFEAFREYAEQLIE+GGVIEYRST A KYDRE++LP PLATGRAL+QALRRD+TA+ + + +           APMS        + A  A AWLALNKN+SMGDTTR ELS A+A+TLQRL+EKPGRLE
Sbjct:   20 MLRGISLPGLSDRGPLRWTAASLGGLRNIRQGSRGGDKDVQEFLEEAVTPR---GAQGPRSGAGRGSGSYERFIKTYKETVLTEEDKRFKTWSNWKDQLEDFENDGQEDLSGGEEGYLGSMVDMESSGRGAKKGRGRGRSVXXXXXXXXXGGRDEEGGEDVGSYFDWTEGSLFIPDLVVREGDEGGTVSDRIRVEDDLQLRLNKLLWRRLKLRARDLDQHVPRAYRRGRAVQRAMAEARAREARAGTGIPGAKGAGLEVQSGTGEDGLGTVRETR---ETSGGPGSRGQVGEGLQEGSPEPVAGGVAPALDPDIQVVKRLNQARTLEAIEDEIGRLMVEGKVDVEMEEEQIRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK--MDDWTRIHVQDLEEAVGEEVPTLDADEEGFEAFREYAEQLIEAGGVIEYRSTRAGKYDREMALPAPLATGRALEQALRRDRTAVEKVSASKHRFGGKEKGTAPMS-----ASDFEASAACAWLALNKNVSMGDTTRMELSGALATTLQRLQEKPGRLE 558
The following BLAST results are available for this feature:
BLAST of NO02G03990 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30326.12.500e-12054.35ubiquitin-conjugating enzyme catalytic domain prot... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007055NSK007055Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G03990.1NO02G03990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|148267gene_990Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100003g79gene390Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G03990.1NO02G03990.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G03990 ID=NO02G03990|Name=NO02G03990|organism=Nannochloropsis oceanica|type=gene|length=3120bp
CTCGTAATGGTAATTAAAACCCTAAAAAAGTAAAAAGAGCAAAAAACTTA
CATAACTTTCTGTTTATTCCCCACAAGCACGTACATTTAGTTGCTGAAGC
GCAATCCCCCCATCCCAGATTTGATGACTAACAGATTGTAAGACTCGACG
AAAATGAGGATATATCAGAGGGCTGAATTTTGCCCGACACGTAGTCCGCA
GCAAGGAGATCTGTATCAAGTCGAGCACACAGACAAGCGAGTAAGGGCCA
TCTGGGGTTTCTTTGCTTGTCCTCCTTAAATTTAAAGTCCAGTAGTACCT
GAAGATAGCACACAAACCACACGAGTTTCTAAGATTTGATAATGTAGAAT
ATCAGCTGAAATTGTTATTATTGTGAAGAAAACCTCAAGCATTTTTTTTC
CCATCGTGAAGCTGTCGAAATTGGTGCTGCGGATGAAGCCTACCCTCATC
CAACCCCCTGCTCTCATCGTACATCAACCGGTAGGATCCCATATCAGCTA
ACAGTGTCCTAATCAAGCCCATTTCGAGATTGAGCAGAAGTACATAGCTA
AACATCTATGATTGTAGGTACAGCATGAAAAGGGATTGTTGTGTGACTTG
GGTGGGCGTCCCTCCTGCCTGCAAGAGGCATAGCTCTGCTCTTTTCTCCA
TCTTCGCCTTACTGACTCCACGAGCATGATATTTTAGCGTGAGGGAAATA
GAATCCCTTGTCAGCGGTGACAGATTACTAACCTCCCAGAGGCCCACTTC
GCAATTCACCTTTTTTGCACTGACCACTACTCAATCAAGGGGAGGCATCA
CAAAAATAGCCCCACACGTATCAAAACTAAATCGTTCATAAGCATCCACA
CTTCAACTGTTGAGGGAATTAGTCATACCAAGTAAAAACGCAGTGGCGTG
CCGTTGCCGTTAGCGTGGTTGAGTGCAATGCACCGATATCCACTTGCTTG
TGCTTGTCTGTCCCTCCCCTCTGTTTGGTGACCTTAACCACAACTTGCGC
CTGCAGCTTGTCCGTATATCCCCTGTTTCCTACGGTCACATTGACTTGTT
GGTGGGGTTGGCTGAAAGGGAAACATTTGGCTCCTTGCTCGACAACACTC
CTTCGTCATCATTAACCGCCCCACACAACACAGAGAGCAAGCCATGCTGC
GCGGGTTAGCATTGCCGAGCCGGAGAGAGGTGGGGCCTTGCCTTCGGACA
GCAGgtatatggacttctaccggtgtaatggtgttgcgttggtcgtagag
gcatggcgaaggacagcgtagctctcaactcttctatccgttcacccaat
taccccactaacagAAACGCTGGGTGGTCTGCGCACCATGCGACAAGGCC
GACGGGGCGAGAACCGGGACGTGCAAGAGTTCTTAGAAGAGGCCGTTACG
CCGCGAGGGCAGTTTGGTGCTGGAGCTGCTGGAGCTGGGGCTGGGCGAGG
TTCTGGCTCCTATGAGCGGTTCATCAAGGCACACAAGGAGACAGTGCTGA
CCGAGGAGGACAAGCGCTTCAAGACGTGGTCAAGTTGGAAAGACCAGCTG
GAGGACTTCAAAGACGATGGACAAGAgtacgtgtgcacgtgggaagtgat
taaaaaaagagatttgacttggcagccccccctctccccctctcttccct
cgcccctgatccatcctcattcatatatttacctatctctccaataaata
tagAGATTTGACCGCAGCTGAAGAAGGATACCTAGGTACGGTGATGGAAA
GCGAAGGCTTTGGCGACAACGAGAATAATGGAGATAAGGCCCAGGGCCGC
AAAGGACGAGCCGGAGGAGGCCGTGGTGATGACGCGGGAGGGGATGACTC
GGGGAGTTACTTCGATTGGAACGAAGAATCTTTGTTCATCCCCAACTTGC
CAGAAAGGAATGAGGAGGAGGGAGGTTTTACCACGGATAAGATCACGGGA
AAGGATGACGTGCAATTGAGGGTGAACAAGTTGTTGTGGCGACGGTTGAA
GCTCAAGGCGAGGGATATGGATCTGCATGTCCCCTCGGCCTTTCGGAGGG
TTAAAATTGTGCAGAAGGCCATGGCCGAAGCAAGGGAAAAGATGGCACGA
GATCCGAGGAAGGAGGAAAGGACGATGAGCGTGGAGAAGAAGGAGGGGAA
GGCGGTCGTGACGTCTTTACGAGAAGACAAGGAGAAGGAAGTGCAGGAGG
GCGACGATGGGGGGGTAGGGGGAGTTACGGAGAATGACAGACAATCAAAT
AATATGACGGCGACGAGCGCTGCTGCTGCGGCTGCTGATCCTGATATCAA
GGAGGTGGCGAGGTTGAATCGGGCCAGAACCGTGGAGGCGATCGAGGCCG
AGATTGGACGGCTGTTGGTGGAGGGAAAGATGGACTTGCAGATGGCGCAG
GATGAGAGGAGGGCTAGAAAAAAAGCGGCCAAGGCAAGGAGTGTGAGTAA
AGGGGAGTGGGATGGGGACGAGGAAATGGGGGAGGAGGAATGGGACGATG
ATGAGGAGGAAGATGATGATGAGGAGGAAACGGCGGGGATGGACGATTGG
TCCAAGATTCATATGCAGGACTTGGAGGAGGCCTTGGGTGAGGAGATCCC
GACTATGGATGTGCATGAGGAGGGGTTTGAGGCGTTTCGGGAGTATGCGG
AGCAGTTGATTGAGTCAGGAGGGGTGATTGAGTATCGGTCTACTATGGCG
GATAAATACGATAGGGAAGTCTCCTTGCCCTTGCCACTGGCGACAGGACG
GGCTCTGAAGCAGGCCTTGCGGAGGGATCAGACGGCGCTGCATGAGACCA
CTCTTGCTCCACCTGCGCCTATGTCTCAGTCTTCGTCCTCGCCACCGGAT
TACGACGCCGCTGCTGCGTTTGCTTGGTTGGCACTCAATAAAAACCTCAG
CATGGGGGATACGACCAGGACGGAACTCAGCGAGGCCATGGCAAGTACTC
TACAGCGTCTTCGGGAGAAGCCAGGGAGGCTTGAACGGGCGCGAAGTCGC
GCCAAAGCCGCAGCGGCGAGTGGGGTCAAGACGGCGGGGGCGGGGTTGGA
TGCGGGGGAGGGAGGAGGGGGACGAGGCGGTGGGGGTGGCAAAGGGGGTG
GCAAGATGAAGGCCAAGTAG
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protein sequence of NO02G03990.1

>NO02G03990.1-protein ID=NO02G03990.1-protein|Name=NO02G03990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=580bp
MLRGLALPSRREVGPCLRTAETLGGLRTMRQGRRGENRDVQEFLEEAVTP
RGQFGAGAAGAGAGRGSGSYERFIKAHKETVLTEEDKRFKTWSSWKDQLE
DFKDDGQEDLTAAEEGYLGTVMESEGFGDNENNGDKAQGRKGRAGGGRGD
DAGGDDSGSYFDWNEESLFIPNLPERNEEEGGFTTDKITGKDDVQLRVNK
LLWRRLKLKARDMDLHVPSAFRRVKIVQKAMAEAREKMARDPRKEERTMS
VEKKEGKAVVTSLREDKEKEVQEGDDGGVGGVTENDRQSNNMTATSAAAA
AADPDIKEVARLNRARTVEAIEAEIGRLLVEGKMDLQMAQDERRARKKAA
KARSVSKGEWDGDEEMGEEEWDDDEEEDDDEEETAGMDDWSKIHMQDLEE
ALGEEIPTMDVHEEGFEAFREYAEQLIESGGVIEYRSTMADKYDREVSLP
LPLATGRALKQALRRDQTALHETTLAPPAPMSQSSSSPPDYDAAAAFAWL
ALNKNLSMGDTTRTELSEAMASTLQRLREKPGRLERARSRAKAAAASGVK
TAGAGLDAGEGGGGRGGGGGKGGGKMKAK*
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Synonyms
Publications