NO02G03620, NO02G03620 (gene) Nannochloropsis oceanica

Overview
NameNO02G03620
Unique NameNO02G03620
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2991
Alignment locationchr2:966565..969555 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:966565..969555 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013320ConA-like_dom
Homology
The following BLAST results are available for this feature:
BLAST of NO02G03620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007017NSK007017Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G03620.1NO02G03620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574779gene_949Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G03620.1NO02G03620.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G03620 ID=NO02G03620|Name=NO02G03620|organism=Nannochloropsis oceanica|type=gene|length=2991bp
ATGTTGCGGGCCCTTCCTCCCACCCTGCTCCTGCAGTTGTCGGTGTTGGT
GTTGGGACTGCTTCTCTCCATTTCCTCCATCACCTCCCATGATGCTGAAT
CCACTTATCGCGTTTCGGGCGAGATTATCTTGTTTGTCTTTGACCGGGAT
GCTTGTCTCTCGGGCAATATTCCTGATGCATTGGCTGGTCCTGCTGGAGT
AGAGGATGAGGACGAGGGCCCACTTCTGGGCTCGCTGGCGGTTCAAGGCC
TATTTTGCCGTCCTACCGGCAATGGGATCACCAATAATGCGACAGGGCCT
CGATTTATAGAGCGCGTGTCCTCGACAGAAACTGCAGAGAGATGGGGAGG
CCTATTTTCAAGCACTCGGACCTTAACAGTTGAGACATGGCTGCGCTATG
ATGCCCTCACAGCCAATGATACAAGTACCTACGTAATTTTTTCCATAGAT
TTTCCTAGCACTTCGACTGTTGCCCCTGACTTGGGCTTAATTATGCAATC
AGGCACGTTGCGGGTCGTAACCGGTAGTACTGCGTCTACCTCTGTCGCTG
GGCCGTCCGTCAAGGGGATCCCAGCCGGCAACTTACACGTCGTCTACACC
TGCGAGCCGGACCCCTTCTCGGAGATGGGCAGCCATTATTGCATGCTTTA
TGTAAACGGTCAGCCTGTCAATGACGGAGCTATTGACGTCCGAATAACGA
TTAACGCACAAAGCCGACTGTTCTTCTTTTCAGAGCCTGAGGGTATGGCG
CTTCGCACGTCTCATCCTTTTCGTGGCAATATATACCTATGGGCGCTCTA
CAGCCGGGTTCTCTCTCCTGCTGAAGTAACACAAAATTACAATGCCCGAG
TTCCCAACAGCCGACCCATTGCCCTCGCCGCCACCCATATTGTGCAGGAG
AATGGTGAGGTGGGCACTCATTACGACACGCCCGAGTATTATCTCGCGCC
AGTCCCCGTGAGTGAGTTGGTGATACTGACGCTCGAGGTTCTGGATGGGG
ATCATGACACTTCCAGTCCCAATTATAATTCTTCAATACAGGTGATGACC
ATGCCACTTTTCTACTTAGCCACACTACCCACTAGGGGGACGCTCTACTA
TCTTAACGGCACGGCCATCACTGCGGGATCACTGCCAATTGCGCTAGATT
TGGCTTTGGCCAATGGCAGCACAAGTAGCGCTTTTGTTACGCATATTAGA
TACAGACCGGGCTGGAAGGAGATTTCGTGGCCTGCCGTGTACACAACTTT
TAGTTTCTACGCTCTTGATGGTATAACAGGCCTGGCTAGTGATACAGCTA
CGGTTTTCATCCAGGTCAAGGCTGTGCACGAGATTCCGAGGGCGGGCATC
TTGGATGATAAGGGCAACGTCACATTTTTATCGGTTAAGACTATGGCAGG
GCGGCTCACAGCTGTGACACTCATGGGCACAGCATCTGAGGGCTTTCGCA
TTATGACAGCTCAAATCGCTTCTCTCCCTACGCACGGCCATCTATACCGC
CTCGACGACACCAACGCTACCACACCACTGCTGGTGGGGGATGAGCTTGC
GATCACTCCTCTCGCACCGGCACAGTTGGCTTATCTCTACACGGGGCCGC
AAGTACAATTGCTGCAAGGACAGGATAATGATTACAAAAAGGCACATGCC
GCCCGCATCAATGACAACTTGGCCACTGACGCCTTCACATATATTGTCAT
TGATAGCTTCAATGCCTCTTCCGTACCAGGCACTCTTCATCTTGTTGTTG
TGCCCTCCTTGGTGGCTCTGCCCACGATCAATACGCCCATCGTACCCGAG
AACACCCTGACGCCCGTGTATCTGTATGGTATGGATCACCAAAGCCTGGA
GCACCGGGAATTGTGCTTCGAAATTACGGGCCTGCCACATCATGGCACCT
TGCACATACTACGGGCGAATGGCACTTCGGATGCTGTGACCTCGGTGCCT
TTTCGGTTGCCGGACCAGGTATCATCATTTCCCTACGAGACAGGCGTGAC
TGTGCATTATGTTTCGGATGCTGGGTTCTTTACACAGCCCAATCGGACCT
GGAACGGCACGGCTCTATTCCCGGAAGgtgaggtggaagaagggttttat
tttcgggttgtagcatgtgagagcggcatgatcaatgcatcgaatatact
gccatccacacgatctatgtggcagCAATTGGCAGTACAGAACGAGAACG
CCGCGACGACAATCGACCTTGGTACAAGCAACTACTCTGTCTACGCCACA
ACCAACCTTGACAACGTCACGCCACTCGGAACCAATCCCACGCAGGTGGT
TCTAGAAGCAGTCTCCATCTCAGATCCTGACCTGGGCATCGATCCGGTTC
TCGTAAATATTGCGTGCACATACGGGAGCATCCGTTTGAACGAAAATAAT
ATCGCGCTCGCCGATTTTACATCCTCGCGTTACTGTCCGACCAACTGCCT
TAAAAAGACGTCGAAGCTTCTTCGATTTGTGACGACGCCTCAAGATTTGG
ATTTCCTGCTCAACGGTCTTGCCTATTCGACCACTGTACCAAACATCGTT
GACCAGATTGAGATCAGCGTCTATGACGGAGTAGGCCCTCCTTGCCTTGC
TGCAGATGTCCTTCCAGCTGGGTCTGGCCGCACCAGAGGTTGTATGACAG
AGGAAGTGCGGGTGAGCGTGACTGTTCAAGACTTCATGATAGTCTCCACA
TTTGACGAAAAACGAAAGCGAGCCAACGAGAACGATCAATCCTACTTATC
CTACATGATAGCAGCCCTCCTTCTGATCATCCTCACCACTATCTCGATGT
GCGCTTGCTGCTGCTGCTGCCCAAAATTCTTGCTCCGTTACAGTCGTTGT
TGTCTGGTAGCACCTCGTCCACACAACAGCGCCGAAGCCTAAATGTTTCC
CAACATGGACAATGTTCTTCTTATTTCTGGAAAAAGCATACCAGCACGCA
CACAAAGCATGAGGCAAAACAAACAAAGCGAAAACAAAACG
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protein sequence of NO02G03620.1

>NO02G03620.1-protein ID=NO02G03620.1-protein|Name=NO02G03620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=721bp
MLRALPPTLLLQLSVLVLGLLLSISSITSHDAESTYRVSGEIILFVFDRD
ACLSGNIPDALAGPAGVEDEDEGPLLGSLAVQGLFCRPTGNGITNNATGP
RFIERVSSTETAERWGGLFSSTRTLTVETWLRYDALTANDTSTYVIFSID
FPSTSTVAPDLGLIMQSGTLRVVTGSTASTSVAGPSVKGIPAGNLHVVYT
CEPDPFSEMGSHYCMLYVNGQPVNDGAIDVRITINAQSRLFFFSEPEGMA
LRTSHPFRGNIYLWALYSRVLSPAEVTQNYNARVPNSRPIALAATHIVQE
NGEVGTHYDTPEYYLAPVPVSELVILTLEVLDGDHDTSSPNYNSSIQVMT
MPLFYLATLPTRGTLYYLNGTAITAGSLPIALDLALANGSTSSAFVTHIR
YRPGWKEISWPAVYTTFSFYALDGITGLASDTATVFIQVKAVHEIPRAGI
LDDKGNVTFLSVKTMAGRLTAVTLMGTASEGFRIMTAQIASLPTHGHLYR
LDDTNATTPLLVGDELAITPLAPAQLAYLYTGPQVQLLQGQDNDYKKAHA
ARINDNLATDAFTYIVIDSFNASSVPGTLHLVVVPSLVALPTINTPIVPE
NTLTPVYLYGMDHQSLEHRELCFEITGLPHHGTLHILRANGTSDAVTSVP
FRLPDQVSSFPYETGVTVHYVSDAGFFTQPNRTWNGTALFPEAIGSTERE
RRDDNRPWYKQLLCLRHNQP*
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Synonyms
Publications