NO02G02710, NO02G02710 (gene) Nannochloropsis oceanica

Overview
NameNO02G02710
Unique NameNO02G02710
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2116
Alignment locationchr2:743222..745337 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:743222..745337 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO02G02710 vs. NCBI_GenBank
Match: EWM30407.1 (hypothetical protein Naga_100026g31 [Nannochloropsis gaditana])

HSP 1 Score: 140.2 bits (352), Expect = 1.500e-29
Identity = 153/430 (35.58%), Postives = 182/430 (42.33%), Query Frame = 0 
Query:    1 MSATPDEIQARLDKNLDDLITPEDEAPSDRHHHN----RGRGGTSRHFRGRGRLGGGGERQRGHRPLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYHVGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHPRVFVDQAPGGMYAQGSHGXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGVYSQGYHRQQRGGPVFELPPFGDGPPMGARPGGIAGPPRRPHSETTLLFKAWSEDGSEVSVDSRHVQILVLKAREGTVTLNPGRKARDTELLLGLNVVLSLLGMEVFVRPRGEEGQEEQGEEWFVRKGSWSQVLEDGMTVSAFASREWPKVASALQIMPTKVSKNNMAFVXXXXXXXXXXXXXXXXXELDVSVLGKRGGGGEGGEVVWVQRGGXXXXXXXXXXXXXXNLWAGSNKWVRT 427
            M ATP+EIQ +L K+L+DLITPEDEAP DRHH N      RGG  R FRG    G G                                              H GP                                 GHP  F   AP  +  +   G                                 +G H  Q GGP    PP   G     R    A   R+P S    LF  WS DG E+ V+ +H ++L++ A  GT+ LN G + R  E LLGLNVV+SLLGMEV      EEGQ +    W VRKGSWSQ   +GMTVSAFASREWPK+ + L  +P  V++ ++  V                     ++LGKR       E V      XXXXXXXXXXXXXXNLWAGSNKWVRT
Sbjct:    1 MPATPEEIQEKLSKDLNDLITPEDEAPGDRHHRNGPRREDRGG--RAFRGWQVPGDG--------------------------------------------FGHEGP-----------------------------VLDFGHPSAF---APPPLMHRMPPGFVEYRNAALPG---------------------GRGGHPWQDGGP--RRPPAQPGQQFVVRS---APGARKPGS--VRLFYVWSADGKELRVEHQHQELLLITA-AGTLRLNAGGRPRSRETLLGLNVVVSLLGMEVVQEEGAEEGQAQ--GSWKVRKGSWSQAFAEGMTVSAFASREWPKIQALLTRLPRDVTREDIVLVPPPPVPTGP------------ALLGKR-------EAVEGGXXXXXXXXXXXXXXXXXNLWAGSNKWVRT 302
The following BLAST results are available for this feature:
BLAST of NO02G02710 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30407.11.500e-2935.58hypothetical protein Naga_100026g31 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006916NSK006916Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02710.1NO02G02710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100026g31gene274Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02710.1NO02G02710.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02710 ID=NO02G02710|Name=NO02G02710|organism=Nannochloropsis oceanica|type=gene|length=2116bp
CTGGGAAAGTTTCTCACTATTGAATGAACACGTTGTTCCACCGTCACGCC
TCAAACCTTGACATAATCTGGACCCGTTTCTCCAATCTTCACATCAACAC
AACGATGGTATTTCTAGAACGCCATTCAATACGCCAGCGGCCAGTCGCTG
TTGGCTGGCCATGGCTCCTTTGAATTATCATCATCAAGCCTCTCACACCT
GCCCCCCACCCCCACCAACACACCTCTGCAGCTTTCTAGCATGTCCGCCA
CGCCCGATGAGATTCAGGCAAGGCTTGACAAGAACCTGGACGATCTGATC
ACACCTGAAGATGAAGCGCCAAGCGACAGACACCACCACAATCGAGGTCG
AGGTGGCACTTCCAGGCATTTCCGAGGAAGAGGAAGGCTGGGCGGCGGTG
GTGAACGCCAGCGCGGACATCGCCCACTTTACGGTGGCAATGAAGGGGCA
CGAGGGGGAGGAGAAGGAAGGGGAGAGCACCCGCAACATTACGTGCCAAG
GGGAGAAGGAGGGCGCGGTGGAGGACGAGGTTTCTACCATGTTGGCCCTG
GGCCTGGCCCTGAGATGAGCTTCCAGGCTCACTATCGCACGGATCAGCCG
CTACCTCTCTACGTTGTAGGAAGAGGGCGAGGAAGAGGAGGACGAGGAGG
GCACCCGCGTGTGTTTGTGGATCAAGCCCCTGGGGGGATGTACGCGCAGG
GAAGCCATGGTGGTGGGGATGGAAGAGGAGGATTCAATAATGGTGCTGCC
GGTTCTGGTGGCTTTTTAGACGGCGGCTCCGGTAGTGGCGGAGGGAGAGG
TGTGTATAGCCAGGGGTATCATCGCCAGCAGCGAGGAGGACCTGTGTTTG
AGCTGCCTCCGTTTGGTGATGGCCCTCCCATGGGTGCCCGTCCAGGAGGT
ATCGCAGGCCCGCCACGTCGGCCTCATTCAGAAACCACTTTGCTGTTTAA
GGCATGGTCGGAGGACGGGTCGGAGGTGAGTGTGGACAGTCGACACGTCC
AGATTCTAGTTTTGAAGGCCCGGGAAGGGACAGTGACGCTGAACCCCGGG
AGGAAGGCGAGGGACACGGAGCTGCTGCTAGGCTTGAACGTGGTCTTGTC
CTTGTTGGGGATGGAGGTGTTCGTGCGGCCAAGAGGAGAGGAAGGGCAGG
AAGAGCAAGGGGAGGAGTGGTTTGTTCGGAAGGGGAGCTGGTCTCAGGTA
TTGGAGGACGGGATGACGGTGTCGGCGTTTGCCTCGCGGGAATGGCCGAA
GGTGGCGTCCGCACTACAAATAATGCCGACGAAGGTATCGAAGAACAATA
TGGCCTTTGTCGCCCCTCCTCCTCCTCCTCCCCCCGCAACTGGGACTGCC
GATGCGGGAGGAGAATTGGACGTGAGTGTGTTGGGGAAGCGTGGGGGTGG
GGGGGAAGGAGGGGAAGTGGTATGGGTACAGAGAGGGGGGGGCAGGGGCG
GAGGACGCGGGAGGGGTCGCGGGAGGGGGGTGAATCTTTGGGCGGGATCA
AACAAGTGGGTTAGAACGTGAGGGAAAGCCGTCCTGGGAACCGATCCTAA
TCTGGCCGTGGTGGGGCTTATCACATGAAGAGTACATTGGGTCAGTCCAT
GTCCTTGCCTTTGCCCTTGGGGGTGGCGCACAGAGGTCAGGTGAGTTGGG
GTGGTGAGGACCGACGTCCAAAGGGGGGGTGGAAGCTGCGAGAACGATTT
GACCCTGGGAGAAGGAAGCTGAATAAGAAGAGGGTGGAGAGGAGGTGCAG
TTTAAGGAGTGAGCTTTATGGTGTGCTCGAATGAGGAAAGTAGGTCGGGG
CGGTAGATAGGCGTGCATTTTGTGGATGGGTGATGGCGTTTGGTGTGCGG
AAGAGAGATAAAGATTGAGAGTGTGAAAAAAAGGTAGAAGATAGAGGGCC
AGTGGGACTGAAATTGGCGACCCTGCTCCCGTCACGCCGTCGATGCTTGG
ACAAAGAATTATCCACACCACATGGAAAGAGCCATTCACATGACATGCAA
ATTTAGTCTCCGAGTGAAATAACATGCATAAATGAGGCAACAAAAGGAAA
AAAATGTTGCCCGGCTTTTGGTACCTGCCTGTCTGCGGAGCAAACAGCTC
GCGTGTGTGTGTGTGT
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protein sequence of NO02G02710.1

>NO02G02710.1-protein ID=NO02G02710.1-protein|Name=NO02G02710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=427bp
MSATPDEIQARLDKNLDDLITPEDEAPSDRHHHNRGRGGTSRHFRGRGRL
GGGGERQRGHRPLYGGNEGARGGGEGRGEHPQHYVPRGEGGRGGGRGFYH
VGPGPGPEMSFQAHYRTDQPLPLYVVGRGRGRGGRGGHPRVFVDQAPGGM
YAQGSHGGGDGRGGFNNGAAGSGGFLDGGSGSGGGRGVYSQGYHRQQRGG
PVFELPPFGDGPPMGARPGGIAGPPRRPHSETTLLFKAWSEDGSEVSVDS
RHVQILVLKAREGTVTLNPGRKARDTELLLGLNVVLSLLGMEVFVRPRGE
EGQEEQGEEWFVRKGSWSQVLEDGMTVSAFASREWPKVASALQIMPTKVS
KNNMAFVAPPPPPPPATGTADAGGELDVSVLGKRGGGGEGGEVVWVQRGG
GRGGGRGRGRGRGVNLWAGSNKWVRT*
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Synonyms
Publications