NO02G02310, NO02G02310 (gene) Nannochloropsis oceanica

Overview
NameNO02G02310
Unique NameNO02G02310
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length771
Alignment locationchr2:648657..649427 -

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Properties
Property NameValue
DescriptionAlpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:648657..649427 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005759mitochondrial matrix
GO:0005739mitochondrion
Vocabulary: Biological Process
TermDefinition
GO:0006974cellular response to DNA damage stimulus
GO:1902445regulation of mitochondrial membrane permeability involved in programmed necrotic cell death
GO:0016043cellular component organization
GO:0008219cell death
GO:0008152metabolic process
GO:0006950response to stress
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR032870ALKBH7
IPR027450AlkB-like
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Homology
BLAST of NO02G02310 vs. NCBI_GenBank
Match: EWM30428.1 (putative alpha-ketoglutarate-dependent dioxygenase abh7 [Nannochloropsis gaditana])

HSP 1 Score: 290.8 bits (743), Expect = 4.100e-75
Identity = 149/205 (72.68%), Postives = 165/205 (80.49%), Query Frame = 0
Query:   49 LDFSNIGPPGFDTSSVQVLPDVITPEEEARLVAELEENVRRRRYVANHWDSVIENYREVEKRGWLDPGNKALADRIKNLILHTLQRPMTLPFLPVHVIDLANDGFIKPHVDSVKFSGDIVSGLSLCSPAIMQLKGDKDQGMDPLSIVRLLLRPRSLYILSGEARYKYAHEILAPSP-GGERWVDGVVVARGRRLSLIFRDEKVQQ 253
            +DFSN      D+SS++VLPDVIT EEEARLVAELE N+RRRRYVANHWDSVIE YREVEKR W+DP N  +A RIK++IL TL + +   FLPVHVIDLA DGFIKPHVDS KFSG +V GLSLCS AIMQLKGD +QG +P SIVRLLLRPRSLYIL G ARY+YAHEILA  P G ERWVDG  V R RRLSLIFRDE+  Q
Sbjct:   70 IDFSNCRDNTLDSSSIRVLPDVITIEEEARLVAELEGNMRRRRYVANHWDSVIERYREVEKRAWIDPLNAKIAQRIKSVILQTLNKSLATRFLPVHVIDLAEDGFIKPHVDSSKFSGGLVCGLSLCSSAIMQLKGDVEQGQNPDSIVRLLLRPRSLYILCGNARYRYAHEILATRPEGEERWVDGRRVKRSRRLSLIFRDEREDQ 274          
BLAST of NO02G02310 vs. NCBI_GenBank
Match: GAX20174.1 (alkylated DNA repair protein alkB homolog 7 [Fistulifera solaris])

HSP 1 Score: 150.6 bits (379), Expect = 6.600e-33
Identity = 92/197 (46.70%), Postives = 112/197 (56.85%), Query Frame = 0
Query:   56 PPGFDTSSVQVLPDVITPEEEARLVAELEENVRRRRYVANHWDSVIENYREVEKRGWLDPGNKALADRIKNLILHTLQRPMTLPFLPVHVIDLANDGFIKPHVDSVKFSGDIVSGLSLCSPAIMQLKGDKDQGMDP--LSIVRLLLRPRSLYILSGEARYKYAHEILAPSPGGERWVDGVVVARGRRLSLIFRDEKV 251
            P  FD  S  V PDVIT  E   LVA +E  ++RRRY   HWDSVI  Y+EVE        N    +RI+  +     + M  P+LP H IDL  DG +  HVDSV+FSGD+V+GLSL S +IM+LK D     D      V L L  RSLY+LSG +RY Y HE+L     G     G  V R RR+S+IFRD KV
Sbjct:    8 PDNFDQQSAVVFPDVITVSEHDALVAHVEPLLKRRRYEKGHWDSVILQYKEVELAEEASAVNDVF-ERIRKEL--EPYKRMEAPWLPCHAIDLRKDGELNEHVDSVRFSGDLVAGLSLLSSSIMRLKPDASTNPDESVKGHVDLYLPSRSLYVLSGVSRYSYTHELLP----GRSLFKGNAVDRDRRISIIFRDAKV 197          
BLAST of NO02G02310 vs. NCBI_GenBank
Match: XP_015124670.1 (PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial [Diachasma alloeum])

HSP 1 Score: 148.3 bits (373), Expect = 3.300e-32
Identity = 90/224 (40.18%), Postives = 130/224 (58.04%), Query Frame = 0
Query:   35 TSSAVASVETSHSLLDFSNIGPPGFDTSSVQVLPDVITPEEEARLVAELEENVRRRRYVANHWDSVIENYREVEKRGWLDPGNKALADRIKNLILHTLQRPMTLPFLP-VHVIDLANDGFIKPHVDSVKFSGDIVSGLSLCSPAIMQLK---GDKDQGMDPLSIVRLLLRPRSLYILSGEARYKYAHEILAPSPGGERWVDGVVVARGRRLSLIFRDEKVQQQE 255
            T+SA+  +ET+ +      +       S++++ P+ ITP+EE RL  E+E  ++R RY  +HWD  I  YRE E+  W D   K + DR++ L       P  +P L  VHV+DLA +G IKPHVDSV+F GD+++G+SL +  IM+L     +KD   D       LL  RSLYI+SG AR KY HE+L P    E    G  + +GRR+S+I R E V +++
Sbjct:   33 TTSALDKIETNENTKWREEL------LSTMRIFPEFITPQEEERLFNEVEPYMKRLRYEFSHWDDAIHGYRETERANWNDENTK-IIDRVRKLAF-----PPGMPQLGLVHVLDLAPEGRIKPHVDSVRFCGDVIAGISLLTDCIMRLTLVGNEKDYRED------FLLPRRSLYIMSGVARQKYNHEVLGPE---ESMYQGEKIIKGRRISIICRSEPVGEKD 235          
BLAST of NO02G02310 vs. NCBI_GenBank
Match: XP_015376001.1 (PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial [Diuraphis noxia])

HSP 1 Score: 148.3 bits (373), Expect = 3.300e-32
Identity = 79/202 (39.11%), Postives = 121/202 (59.90%), Query Frame = 0
Query:   47 SLLDFSNIGPPGFDTSSVQVLPDVITPEEEARLVAELEENVRRRRYVANHWDSVIENYREVEKRGWLDPGNKALADRIKNLILHTLQRPMTLPFLPVHVIDLANDGFIKPHVDSVKFSGDIVSGLSLCSPAIMQLKGDKDQGMDPLSIVRLLLRPRSLYILSGEARYKYAHEILAPSPGGERWVDGVVVARGRRLSLIFRDE 249
            S  +  NI    FD SS  ++PD+++ +EE+RL+ E+E++++R RY  +HWD  I  YRE E   W D  N  +  ++KN +       +T     VH++DL N+G++KPH+DSV+F G+I++GLSL S ++M+L    D+      +V  LL  RSLYI+   ARY+Y HEIL  S G         + R RR+S++ R+E
Sbjct:   56 STXNLVNIKRQQFD-SSFTIVPDIVSVDEESRLIDEIEKSLKRLRYQHDHWDDAIHGYRETEIITWKDQNNSNVIQKLKNRVF--ANESITEQMQRVHILDLCNNGYVKPHIDSVRFCGNIIAGLSLLSDSVMRL---ADEKCPDTYVVYALLPRRSLYIMKDSARYQYTHEIL--SDGAPTVFSDRQIVRERRVSIVMRNE 249          
BLAST of NO02G02310 vs. NCBI_GenBank
Match: XP_017491199.1 (PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial-like [Rhagoletis zephyria])

HSP 1 Score: 147.9 bits (372), Expect = 4.300e-32
Identity = 87/223 (39.01%), Postives = 130/223 (58.30%), Query Frame = 0
Query:   37 SAVASVETSHSLLD----FSNIGPPGFD--TSSVQVLPDVITPEEEARLVAELEENVRRRRYVANHWDSVIENYREVEKRGWLDPGNKALADRIKNLILHTLQRPMTLPFLPVHVIDLANDGFIKPHVDSVKFSGDIVSGLSLCSPAIMQLKGDKDQGMDPLSIVRLLLRPRSLYILSGEARYKYAHEILAPSPGGERWVDGVVVARGRRLSLIFRDEKVQQQ 254
            S V S E +H L      F +  P   +  TSS+Q+  D IT  EE +L+ E+E  ++R RY  +HWD  I NYRE E   W  P N+ + +R++     +  + +      VH++D+A DGFIKPHVDSV+F GD +SG+SL S ++M+L  ++D+ +     V +LL  RSLYI+ G++RYK+ HEIL        +  G  V R RR+S+I R+E   ++
Sbjct:   27 SFVPSKENAHKLPKNIKFFESASPVALEQVTSSMQIYLDFITKTEEQKLLDEVEHVLKRIRYETSHWDDAIHNYRETEHLRW-KPDNQKIIERVRQTAFASNAKHIKY----VHILDIAKDGFIKPHVDSVRFCGDTISGISLLSDSVMRLALEQDKTV----FVDILLNRRSLYIMRGDSRYKFTHEILDDKTS---YFRGQHVPRDRRISVICRNEPPNEE 237          
BLAST of NO02G02310 vs. NCBI_GenBank
Match: XP_015517158.1 (PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial [Neodiprion lecontei])

HSP 1 Score: 147.5 bits (371), Expect = 5.600e-32
Identity = 82/186 (44.09%), Postives = 115/186 (61.83%), Query Frame = 0
Query:   61 TSSVQVLPDVITPEEEARLVAELEENVRRRRYVANHWDSVIENYREVEKRGWLDPGNKALADRIKNLILHTLQRPMTLPFLPVHVIDLANDGFIKPHVDSVKFSGDIVSGLSLCSPAIMQLKGDKDQGMDPLSIVRLLLRPRSLYILSGEARYKYAHEILAPSPGGERWVDGVVVARGRRLSLIFR 247
            ++++++ PD ITP+EE  L  E+E  ++R RY ++HWD+ I++YRE EK  W + GN A+  +I+     T   P T     VHV+DLA DG IKPHVDSV+F GD ++GLSL S ++M+L      G +       LL  RSLY++SG ARYKY HEIL P        +G  + R RR+S+I R
Sbjct:   44 SATMRIFPDFITPQEEESLFQEIEPYLKRLRYESSHWDNAIQSYRETEKSTW-NKGNSAVIQKIQK----TAFPPDTSLLGHVHVLDLAGDGMIKPHVDSVRFCGDTIAGLSLLSDSVMRL---TMVGYEKECFKDYLLLQRSLYVMSGAARYKYNHEILGPDGS---TFEGNKIPRSRRISVICR 218          
BLAST of NO02G02310 vs. NCBI_GenBank
Match: XP_002732369.2 (PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial-like [Saccoglossus kowalevskii])

HSP 1 Score: 147.1 bits (370), Expect = 7.300e-32
Identity = 82/188 (43.62%), Postives = 118/188 (62.77%), Query Frame = 0
Query:   66 VLPDVITPEEEARLVAELEENVRRRRYVANHWDSVIENYREVEKRGWLDPGNKALADRIKNLILHTLQRPMTLPFLP-VHVIDLANDGFIKPHVDSVKFSGDIVSGLSLCSPAIMQLKGDKDQGMDPLSIVRLLLRPRSLYILSGEARYKYAHEILAPSPGGERWVDGVVVARGRRLSLIFRDEKVQQ 253
            V PD +T  EE  L  E+++ V+R RY  +HWD  I  Y+E E   W D  NK +  R++++       P  +  LP VHVIDLA++G+IKPH+DSVKF G+I++GLSL S +IM+L  DK++ +     + +LL+PRSLY++   AR+ Y HEIL   P  E +  G  V R RR+S++ R+E V Q
Sbjct:    3 VYPDFLTEGEEQSLYKEVDKYVKRMRYEYDHWDDAIHGYKETEFSRWSD-SNKQIIQRVRDVAF-----PPGVQQLPLVHVIDLADNGYIKPHIDSVKFCGNIITGLSLLSSSIMRLVHDKNKELK----IDILLKPRSLYVMRDAARFDYTHEIL---PDSESYFKGRHVPRARRISIMCRNEVVNQ 177          
BLAST of NO02G02310 vs. NCBI_GenBank
Match: XP_008616186.1 (hypothetical protein SDRG_11910 [Saprolegnia diclina VS20] >EQC30333.1 hypothetical protein SDRG_11910 [Saprolegnia diclina VS20])

HSP 1 Score: 146.4 bits (368), Expect = 1.300e-31
Identity = 93/229 (40.61%), Postives = 131/229 (57.21%), Query Frame = 0
Query:   24 PLSCPVICH-----LSTSSAVASVETSHSLLDFSNIGPPGFDTSSVQVLPDVITPEEEARLVAELEENVRRRRYVANHWDSVIENYREVEKRGWLDPGNKALADRIKNLILHTLQRPMTLPFLPVHVIDLANDGFIKPHVDSVKFSGDIVSGLSLCSPAIMQLKGDKDQGMDPLSIVRLLLRPRSLYILSGEARYKYAHEILAPSPGGERWVDGVVVARGRRLSLIFRD 248
            PL C  + H     LST+ A+     +   +D S    P    S +QV+ +VI+ ++E RL  E    +RRRRY  +HWD VI N++E+E   W     KA+   +++L   ++  P    F  VHVIDLA  G+IKPHVDS+KFSG IV+G+SL SP++M+ K    + + P  +  LL R RS Y +SG  RY+Y HEIL     G +   G  V R RR+S++FRD
Sbjct:    4 PLRCMGLRHRLVRRLSTAPALPYSWATSDNVDRSLCCDPFLQPSDLQVMTEVISEDDEQRLADEAATLLRRRRYETDHWDQVIVNFKEMETTKW-SAEAKAILAHLRSL---SVMPPQLTYFPTVHVIDLAEAGYIKPHVDSIKFSGQIVAGISLLSPSVMRFK----EEVGPSQLDALLPR-RSFYCMSGGVRYRYTHEILP----GHQTFQGRDVERTRRISIMFRD 219          
BLAST of NO02G02310 vs. NCBI_GenBank
Match: ETL85367.1 (hypothetical protein L917_15059 [Phytophthora parasitica])

HSP 1 Score: 146.4 bits (368), Expect = 1.300e-31
Identity = 93/238 (39.08%), Postives = 135/238 (56.72%), Query Frame = 0
Query:   24 PLSCPVI--CHLSTSSAVASVETSHSL------LDFSNIGPPGFDTSSVQVLPDVITPEEEARLVAELEENVRRRRYVANHWDSVIENYREVEKRGWLDPGNKALADRIKNLILHTLQRPMTLPFLP-VHVIDLANDGFIKPHVDSVKFSGDIVSGLSLCSPAIMQLKGDKDQGMDPLSIVRLLLRPRSLYILSGEARYKYAHEILAPSPGGERWVDGVVVARGRRLSLIFRDEKVQQ 253
            PL C ++    L +SSAVA+   S SL      LD ++   P      +Q++ DVIT +EE  L  E    ++RRR+  NHWD VI  Y+E+E+  W          RI   +      P  L + P VHVI+LA DG+IKPHVDS+KFSG +V+G++L SP+IM+ K +        S++   LR RS+Y+++G  RY Y HEIL   PG + +   V V R  R+S++ RDE +++
Sbjct:    6 PLRCSLVPLRRLLSSSAVAA-PPSQSLWQDVYNLDATHCHDPLVSEDDLQLMLDVITDDEEKVLSDECARILKRRRFEENHWDDVIIKYKEMERSRW-----STETQRILQKVREVAILPRDLTYFPAVHVIELAEDGYIKPHVDSIKFSGRVVAGINLLSPSIMRFKEEHGD-----SVIDAYLRRRSMYMMTGRVRYHYTHEIL---PGAQVFRGEVPVNRTHRISIMLRDEFLEE 229          
BLAST of NO02G02310 vs. NCBI_GenBank
Match: ETM38522.1 (hypothetical protein L914_15193 [Phytophthora parasitica])

HSP 1 Score: 146.4 bits (368), Expect = 1.300e-31
Identity = 93/238 (39.08%), Postives = 135/238 (56.72%), Query Frame = 0
Query:   24 PLSCPVI--CHLSTSSAVASVETSHSL------LDFSNIGPPGFDTSSVQVLPDVITPEEEARLVAELEENVRRRRYVANHWDSVIENYREVEKRGWLDPGNKALADRIKNLILHTLQRPMTLPFLP-VHVIDLANDGFIKPHVDSVKFSGDIVSGLSLCSPAIMQLKGDKDQGMDPLSIVRLLLRPRSLYILSGEARYKYAHEILAPSPGGERWVDGVVVARGRRLSLIFRDEKVQQ 253
            PL C ++    L +SSAVA+   S SL      LD ++   P      +Q++ DVIT +EE  L  E    ++RRR+  NHWD VI  Y+E+E+  W          RI   +      P  L + P VHVI+LA DG+IKPHVDS+KFSG +V+G++L SP+IM+ K +        S++   LR RS+Y+++G  RY Y HEIL   PG + +   V V R  R+S++ RDE +++
Sbjct:    6 PLRCSLVPLRRLLSSSAVAA-PPSQSLWQDVYNLDATHCHDPLVSEDDLQLMLDVITDDEEKVLSDECARILKRRRFEENHWDDVIIKYKEMERSRW-----STETQRILQKVREVAILPRDLTYFPAVHVIELAEDGYIKPHVDSIKFSGRVVAGINLLSPSIMRFKEEHGD-----SVIDAYLRRRSMYMMTGRVRYHYTHEIL---PGAQVFRGEVPVNRTHRISIMLRDEFLEE 229          
The following BLAST results are available for this feature:
BLAST of NO02G02310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30428.14.100e-7572.68putative alpha-ketoglutarate-dependent dioxygenase... [more]
GAX20174.16.600e-3346.70alkylated DNA repair protein alkB homolog 7 [Fistu... [more]
XP_015124670.13.300e-3240.18PREDICTED: alpha-ketoglutarate-dependent dioxygena... [more]
XP_015376001.13.300e-3239.11PREDICTED: alpha-ketoglutarate-dependent dioxygena... [more]
XP_017491199.14.300e-3239.01PREDICTED: alpha-ketoglutarate-dependent dioxygena... [more]
XP_015517158.15.600e-3244.09PREDICTED: alpha-ketoglutarate-dependent dioxygena... [more]
XP_002732369.27.300e-3243.62PREDICTED: alpha-ketoglutarate-dependent dioxygena... [more]
XP_008616186.11.300e-3140.61hypothetical protein SDRG_11910 [Saprolegnia dicli... [more]
ETL85367.11.300e-3139.08hypothetical protein L917_15059 [Phytophthora para... [more]
ETM38522.11.300e-3139.08hypothetical protein L914_15193 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006873NSK006873Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02310.1NO02G02310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|550017gene_818Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100210g5gene234Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02310.1NO02G02310.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02310 ID=NO02G02310|Name=NO02G02310|organism=Nannochloropsis oceanica|type=gene|length=771bp
ATGTCCCTCCTCGTTGTCTCGGCCGCCTGTCGCCTAGTCCTATCACACTG
TCGCAAGCGATCAAGGCCACCATTGTCCTGCCCCGTCATTTGTCACCTCA
GCACCTCCTCAGCTGTCGCCTCCGTCGAGACCTCGCACTCCCTTCTCGAC
TTCTCCAACATCGGCCCTCCGGGTTTTGACACGTCCTCCGTGCAGGTCTT
GCCCGATGTCATCACGCCTGAAGAAGAGGCCCGACTTGTGGCCGAGTTGG
AGGAGAATGTGCGGCGGCGTCGATATGTCGCTAACCATTGGGACTCTGTT
ATTGAAAATTATCGGGAGGTAGAAAAACGAGGATGGCTTGACCCCGGGAA
CAAAGCGCTGGCCGACCGGATCAAGAACCTCATTCTCCACACACTGCAGC
GCCCTATGACATTGCCTTTCCTCCCGGTGCATGTGATTGATTTAGCCAAC
GATGGATTTATCAAGCCTCATGTTGATAGTGTAAAATTTAGTGGCGACAT
TGTGAGTGGCCTCTCCCTGTGCTCGCCCGCCATCATGCAACTCAAAGGCG
ACAAAGACCAAGGCATGGACCCCTTATCTATCGTTCGCTTGTTGCTACGG
CCTCGTTCGTTGTATATTTTAAGTGGGGAAGCAAGATATAAATACGCACA
CGAGATCTTGGCGCCTTCGCCCGGGGGGGAAAGGTGGGTGGATGGGGTGG
TGGTGGCACGTGGGCGACGATTATCTTTGATATTTAGGGATGAAAAGGTG
CAGCAGCAAGAGGAGATTTGA
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protein sequence of NO02G02310.1

>NO02G02310.1-protein ID=NO02G02310.1-protein|Name=NO02G02310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=257bp
MSLLVVSAACRLVLSHCRKRSRPPLSCPVICHLSTSSAVASVETSHSLLD
FSNIGPPGFDTSSVQVLPDVITPEEEARLVAELEENVRRRRYVANHWDSV
IENYREVEKRGWLDPGNKALADRIKNLILHTLQRPMTLPFLPVHVIDLAN
DGFIKPHVDSVKFSGDIVSGLSLCSPAIMQLKGDKDQGMDPLSIVRLLLR
PRSLYILSGEARYKYAHEILAPSPGGERWVDGVVVARGRRLSLIFRDEKV
QQQEEI*
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Synonyms
Publications