NO02G00560, NO02G00560 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO02G00560 vs. NCBI_GenBank
Match: EWM30610.1 (thymidylate synthase [Nannochloropsis gaditana]) HSP 1 Score: 311.6 bits (797), Expect = 2.300e-81 Identity = 168/234 (71.79%), Postives = 193/234 (82.48%), Query Frame = 0 Query: 43 TLALVPTSGTTSATR------------TSFGRSAPAM-STKGAAFKTLAAPTEYEEVIKKSRFLTHAVSATSFAEAQDFLKRVSDLKATHNCWGWRGRGEERSSDDGEPGGTAGRPILSAIESEELVDVVVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETVTHIPKVLVRLIAPLAMSGAVFQTISRVEKVGEDYTAEEVMVDVKVEASQVEGLRQQLQDATKGAGRLEE 264 ++ L TT+ATR T FG P M +TK A+FKTLA P EYEE+IKKSRFL+ A A+SFAEAQ FL+ V DLKA+HNCW WRG GEERSSDDGEPGGTAGRPILSAIESE+LVDV+VVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAET+THIPKVLVRL APL+MSGAVFQTI+R +K+ EDYTAEE++VDVKV+A+ ++ LRQQLQDAT+G+G LEE Sbjct: 37 SIKLTAAFSTTAATRVVAHTALRTGSMTVFG---PLMAATKSASFKTLAGPAEYEEIIKKSRFLSRATPASSFAEAQTFLRDVGDLKASHNCWAWRGHGEERSSDDGEPGGTAGRPILSAIESEDLVDVMVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETLTHIPKVLVRLRAPLSMSGAVFQTINRTDKIKEDYTAEEIIVDVKVDAALIDNLRQQLQDATRGSGSLEE 267
BLAST of NO02G00560 vs. NCBI_GenBank
Match: WP_013703923.1 (DUF1949 domain-containing protein [Marinithermus hydrothermalis] >AEB11876.1 Uncharacterized protein family UPF0029, Impact, N-terminal protein [Marinithermus hydrothermalis DSM 14884]) HSP 1 Score: 171.8 bits (434), Expect = 2.900e-39 Identity = 97/189 (51.32%), Postives = 123/189 (65.08%), Query Frame = 0 Query: 75 KTLAAPTEYEEVIKKSRFLTHAVSATSFAEAQDFLKRVSDLKATHNCWGWRGRGEERSSDDGEPGGTAGRPILSAIESEELVDVVVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETVTHIPKVLVRLIAPLAMSGAVFQTISR--VEKVGEDYTAEEVMVDVKVEASQVEGLRQQLQDATKGAGRL 262 +T+A P Y E IKKSRF+ HA + EA FL+ V D +ATHNCW ++ R SDDGEPGGTAG+PIL AIE + L V+VVVTRYFGGIKLGAGGLVRAYGGVA TCLR A P+V V+L P G V+ + R V K E YT + + ++++A+ +E R+ L DAT+G R+ Sbjct: 2 RTIAEPYTYAEEIKKSRFIAHAAPVETPEEAMAFLEAVRDPQATHNCWAYKIGQAYRFSDDGEPGGTAGQPILRAIEGQGLDHVMVVVTRYFGGIKLGAGGLVRAYGGVAATCLRQAPKREVRPQVPVQLSVPFEAMGGVYPVLERFAVTKEAERYTQAGLELALRLDAADLEAFRRALTDATRGKARV 190
BLAST of NO02G00560 vs. NCBI_GenBank
Match: WP_027893188.1 (YigZ family protein [Meiothermus chliarophilus]) HSP 1 Score: 171.0 bits (432), Expect = 4.900e-39 Identity = 97/189 (51.32%), Postives = 127/189 (67.20%), Query Frame = 0 Query: 76 TLAAPTEYEEVIKKSRFLTHAVSATSFAEAQDFLKRVSDLKATHNCWGWRGRGEERSSDDGEPGGTAGRPILSAIESEELVDVVVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETVTHIPKVLVRLIAPLAMSGAVFQTISR--VEKVGEDYTAEEVMVDVKVEASQVEGLRQQLQDATKGAGRLE 263 TLAAP E E+VI+KSRF+ A A + EA FL++V +L+ATHNCW ++ R SDDGEPGGTAG+PIL AI + L V+VVVTRYFGG+KLG GGLVRAYGGVA CLR A PKV V L P +SG V+ + R + + E YTA+ + +++ +EAS +E + L+DA++G R E Sbjct: 3 TLAAPHELEQVIQKSRFIARAAPAATPEEALAFLEQVRELEATHNCWAYQVGPLYRFSDDGEPGGTAGQPILRAIRGQGLDRVMVVVTRYFGGVKLGTGGLVRAYGGVAAECLRQAPRREVRPKVRVALEVPFELSGVVYGLLERGGLPRDAEGYTAQGLRLELTLEASALEAFQAALRDASRGVLRAE 191
BLAST of NO02G00560 vs. NCBI_GenBank
Match: WP_018465879.1 (YigZ family protein [Meiothermus timidus]) HSP 1 Score: 169.5 bits (428), Expect = 1.400e-38 Identity = 94/189 (49.74%), Postives = 131/189 (69.31%), Query Frame = 0 Query: 76 TLAAPTEYEEVIKKSRFLTHAVSATSFAEAQDFLKRVSDLKATHNCWGWRGRGEERSSDDGEPGGTAGRPILSAIESEELVDVVVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETVTHIPKVLVRLIAPLAMSGAVFQTISR--VEKVGEDYTAEEVMVDVKVEASQVEGLRQQLQDATKGAGRLE 263 TLAAP E E++++KSRF+ A AT+ EA FL+RV + +ATHNCW ++ R DDGEPGGTAG+PIL AI+++ L V+VVVTRYFGG+KLGAGGL RAYGGVA CLR A +P++ +RL AP M+G V+ + R + + E YT ++++ +E +++E R L+DA++GA RLE Sbjct: 3 TLAAPCELEQLVQKSRFIARAAPATTPEEALAFLERVREPEATHNCWAYQIGLLYRFCDDGEPGGTAGQPILRAIQAQGLDRVMVVVTRYFGGVKLGAGGLARAYGGVAAECLRQAPKREIVPRLRLRLEAPFEMAGQVYALLERWKLAREFEGYTEAGLVLEFVLEEARLEAFRVALRDASRGALRLE 191
BLAST of NO02G00560 vs. NCBI_GenBank
Match: WP_036258662.1 (IMPACT family member in pol 5'region [Meiothermus cerbereus]) HSP 1 Score: 167.2 bits (422), Expect = 7.100e-38 Identity = 91/187 (48.66%), Postives = 121/187 (64.71%), Query Frame = 0 Query: 76 TLAAPTEYEEVIKKSRFLTHAVSATSFAEAQDFLKRVSDLKATHNCWGWRGRGEERSSDDGEPGGTAGRPILSAIESEELVDVVVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETVTHIPKVLVRLIAPLAMSGAVFQTISRVEKVGEDYTAEEVMVDVKVEASQVEGLRQQLQDATKGAGRLE 263 TL YE +K+SRF+ HA S AEA FL+ V D+ ATHNCW ++ + R DDGEP GTAGRPIL AI+++ L V+VVVTRYFGGIKLGAGGLVRAYGGVA CLR A P + +L AP + A++Q ++++ E+Y E V V+V++E Q+ L+ L+D T+G L+ Sbjct: 7 TLQGIYSYEHEVKRSRFVAHAAPLASSAEAPAFLQAVRDVHATHNCWAYKVGSQYRFFDDGEPAGTAGRPILGAIDAQGLDRVMVVVTRYFGGIKLGAGGLVRAYGGVAAECLRQAPKQAIRPMMRCQLRAPFEYTNALYQITEGLKRLTENYDEEGVWVEVQIEEQQLPRLQALLRDVTRGRATLQ 193
BLAST of NO02G00560 vs. NCBI_GenBank
Match: WP_013457681.1 (YigZ family protein [Oceanithermus profundus] >ADR36511.1 Uncharacterized protein family UPF0029, Impact, N-terminal protein [Oceanithermus profundus DSM 14977]) HSP 1 Score: 166.4 bits (420), Expect = 1.200e-37 Identity = 93/190 (48.95%), Postives = 127/190 (66.84%), Query Frame = 0 Query: 75 KTLAAPTEYEEVIKKSRFLTHAVSATSFAEAQDFLKRVSDLKATHNCWGWRGRGEERSSDDGEPGGTAGRPILSAIESEELVDVVVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETVTHIPKVLVRLIAPLAMSGAVFQTI--SRVEKVGEDYTAEEVMVDVKVEASQVEGLRQQLQDATKGAGRLE 263 +TLA P YEE IKKSRF+ A A EA+ FL+ V D ATHNCW ++ R +DDGEPGGTAG+PIL AIE L VVVVVTRYFGG+KLGAGGL RAYGGVA CLR A + PK +++ P A+S ++ + + ++GE Y ++ ++ +V+V+A++V L L+DA+KG+ R++ Sbjct: 8 RTLAEPAGYEEEIKKSRFVCAAARADDPEEARLFLESVKDPAATHNCWAYKIGSAYRFADDGEPGGTAGQPILRAIEGHGLDHVVVVVTRYFGGVKLGAGGLARAYGGVAAECLRRARILEIQPKRRLQVAIPYALSAKLYPILVAAGARRLGEAYASDHLVWEVEVDAARVGELETALRDASKGSVRVQ 197
BLAST of NO02G00560 vs. NCBI_GenBank
Match: WP_066096407.1 (DUF1949 domain-containing protein [Xanthomonas massiliensis]) HSP 1 Score: 164.9 bits (416), Expect = 3.500e-37 Identity = 93/190 (48.95%), Postives = 121/190 (63.68%), Query Frame = 0 Query: 76 TLAAPTEYEEVIKKSRFLTHAVSATSFAEAQDFLKRVSDLKATHNCWGWRGRGEERSSDDGEPGGTAGRPILSAIESEELVDVVVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETVTHIPKVLVRLIAPLAMSGAVFQTIS--RVEKVGEDYTAEEVMVDVKVEASQVEGLRQQLQDATKGAGRLEE 264 TLA P + +K SRFL A A A DF+++ D +ATHNCW WR G+ RSSDDGEP GTAGRPIL+AI+ + L VVVVVTR+FGGIKLGAGGLVRAYGGVA CLR A + + + L G V ++ +K+GEDY AE V +++++ A +V L+ +L+DAT+ R E Sbjct: 4 TLATPVRHALDVKHSRFLAQAAPVADGAAALDFVRQAGDAQATHNCWAWRIGGDYRSSDDGEPAGTAGRPILAAIDGQGLDRVVVVVTRWFGGIKLGAGGLVRAYGGVAAECLRLAPRQPIVVQAALALACAFEDIGTVHAALAAHSADKLGEDYLAEGVRMNLRLPADRVGALKTRLRDATRNRIRFLE 193
BLAST of NO02G00560 vs. NCBI_GenBank
Match: WP_027887618.1 (MULTISPECIES: YigZ family protein [Meiothermus] >KIQ53387.1 IMPACT family member in pol 5'region [Meiothermus ruber] >KZK16472.1 IMPACT family protein [Meiothermus taiwanensis]) HSP 1 Score: 164.5 bits (415), Expect = 4.600e-37 Identity = 90/186 (48.39%), Postives = 120/186 (64.52%), Query Frame = 0 Query: 76 TLAAPTEYEEVIKKSRFLTHAVSATSFAEAQDFLKRVSDLKATHNCWGWRGRGEERSSDDGEPGGTAGRPILSAIESEELVDVVVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETVTHIPKVLVRLIAPLAMSGAVFQTISRVEKVGEDYTAEEVMVDVKVEASQVEGLRQQLQDATKGAGRL 262 TL AP YE +K+SRF+ HA+ S A FL+ V DL+ATHNCW ++ + R SDDGEP GTAGRPILSAIE++ L V+VVVTRYFGGIKLG GGLVRAYGGVA CLR A +P+V L AP A+++ + +E+ E Y A V +E +++ +++++D T+G L Sbjct: 5 TLQAPHRYELEVKRSRFVAHALPLPSPEAAPLFLQAVQDLQATHNCWAYKVGAQYRFSDDGEPAGTAGRPILSAIEAQHLDRVMVVVTRYFGGIKLGVGGLVRAYGGVASECLRQAPKRAIVPRVRCELQAPYEFGSALYRLLEGLERESETYHAAGVRWLFSLEEARLPQFQERVRDLTRGRAHL 190
BLAST of NO02G00560 vs. NCBI_GenBank
Match: WP_010444292.1 (MULTISPECIES: DUF1949 domain-containing protein [Pseudomonas] >SDS18478.1 uncharacterized protein, YigZ family [Pseudomonas asplenii] >SEI24982.1 uncharacterized protein, YigZ family [Pseudomonas fuscovaginae]) HSP 1 Score: 163.3 bits (412), Expect = 1.000e-36 Identity = 90/184 (48.91%), Postives = 122/184 (66.30%), Query Frame = 0 Query: 76 TLAAPTEYEEVIKKSRFLTHAVSATSFAEAQDFLKRVSDLKATHNCWGWRGRGEERSSDDGEPGGTAGRPILSAIESEELVDVVVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETVTHIPKVLVRLIAPLAMSGAVFQTISRVE--KVGEDYTAEEVMVDVKVEASQVEGLRQQLQDATKG 258 TLA EY E I+KSRF+T A TS A+AQDF+++ SD ATHNCW W+ + RSSDDGEPGGTAGRPIL+AIE+++ V V+V R++GGI+LG GGL RAYGG A CL+NAE + I +V +R + V ++ V ED+TA V + + V AS ++ L++QL D ++G Sbjct: 4 TLAGLCEYREEIRKSRFITLAAPVTSAAQAQDFIEQHSDRDATHNCWAWKLADQYRSSDDGEPGGTAGRPILAAIEAQDCDQVAVLVIRWYGGIQLGTGGLARAYGGGANKCLQNAERIELISRVPLRCACSFSELALVKLRVAEAGGLVVAEDFTANGVELQLAVGASLIDTLQRQLADLSRG 187
BLAST of NO02G00560 vs. NCBI_GenBank
Match: WP_047273264.1 (MULTISPECIES: DUF1949 domain-containing protein [Pseudomonas] >KMM87448.1 thymidylate synthase [Pseudomonas lundensis] >SDQ15739.1 uncharacterized protein, YigZ family [Pseudomonas lundensis] >AOZ13546.1 thymidylate synthase [Pseudomonas lundensis]) HSP 1 Score: 163.3 bits (412), Expect = 1.000e-36 Identity = 90/184 (48.91%), Postives = 119/184 (64.67%), Query Frame = 0 Query: 76 TLAAPTEYEEVIKKSRFLTHAVSATSFAEAQDFLKRVSDLKATHNCWGWRGRGEERSSDDGEPGGTAGRPILSAIESEELVDVVVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETVTHIPKVLVRLIAPLAMSGAVFQTISRVEKV--GEDYTAEEVMVDVKVEASQVEGLRQQLQDATKG 258 TL P EY E I+KSRF+THA TS +AQDF+ SDL A+HNCW W+ + RSSDDGEPGGTAGRPILSAIE+++ VVV+V R++GGI+LG GGL RAYGG A CL+ A+ I +V + + V +S + V E +TA V + ++V +Q+ LRQQL D ++G Sbjct: 4 TLTGPCEYREEIRKSRFITHAAPITSAQQAQDFIALHSDLNASHNCWAWKLGDQYRSSDDGEPGGTAGRPILSAIEAQDCDQVVVLVIRWYGGIQLGTGGLARAYGGGANKCLQAADKSPLITRVALECACSFSELALVKLRLSELNGVLSNETFTANGVELVLEVSEAQIPDLRQQLADLSRG 187 The following BLAST results are available for this feature:
BLAST of NO02G00560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO02G00560 ID=NO02G00560|Name=NO02G00560|organism=Nannochloropsis oceanica|type=gene|length=2756bpback to top protein sequence of NO02G00560.3 >NO02G00560.3-protein ID=NO02G00560.3-protein|Name=NO02G00560.3|organism=Nannochloropsis oceanica|type=polypeptide|length=333bpback to top protein sequence of NO02G00560.2 >NO02G00560.2-protein ID=NO02G00560.2-protein|Name=NO02G00560.2|organism=Nannochloropsis oceanica|type=polypeptide|length=266bpback to top protein sequence of NO02G00560.1 >NO02G00560.1-protein ID=NO02G00560.1-protein|Name=NO02G00560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=303bpback to top Synonyms
Publications
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