NO02G00050, NO02G00050 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO02G00050 vs. NCBI_GenBank
Match: EWM30658.1 (3-hydroxyacyl-dehydratase pasticcino 2a-like protein [Nannochloropsis gaditana]) HSP 1 Score: 322.8 bits (826), Expect = 9.600e-85 Identity = 167/245 (68.16%), Postives = 194/245 (79.18%), Query Frame = 0 Query: 13 RLYLNAYNLSQTGLWVMVLVSTIKALLADVHDYVGVWTEAGPATKLAVGGAWLELVHVFLGLAGGSVSSAFWQNFGRSFVLFAIVDAFNTPTGLAWLPALLLAWSGGELIRYPFYLLGSNAPPFLVWLRYSAFIVLYPLGMASEVALLLRTLPEARAAVEKEDRFCMRLPW-AEEWRAFNFYYFLVFGLLVLYPFAIPYMLFYMVKQRKKRLG--GSKEGNEGEAACGAVPA---GGSWKSRKAE 252 R YL++YNL+QTGLW VL T+ AL ++VHDY GVW AGPA KLAV GAWLELVHV LGLAGGSVSSAFWQNFGR+FVLFAIVD+F TP +AWLPALL+AWS GEL+RYPFYL+GSNAPP LVWLRYSAF++LYP+GMASEVALL TL EAR AV +ED+FC+RLP WR NFYYFL+FGLLVLYPFAIPYM YM++QR+KRL G ++ + +PA S KSRKA+ Sbjct: 46 RAYLSSYNLAQTGLWATVLALTLSALFSNVHDYGGVWAAAGPAAKLAVAGAWLELVHVALGLAGGSVSSAFWQNFGRTFVLFAIVDSFQTPRTVAWLPALLVAWSCGELVRYPFYLMGSNAPPALVWLRYSAFLLLYPVGMASEVALLFLTLTEAREAVAREDKFCLRLPGKGASWRILNFYYFLLFGLLVLYPFAIPYMYSYMLRQRRKRLNVTGREDAITRMSGAAKLPAEMVSSSKKSRKAD 290
BLAST of NO02G00050 vs. NCBI_GenBank
Match: PUZ58058.1 (hypothetical protein GQ55_5G478500 [Panicum hallii var. hallii]) HSP 1 Score: 114.4 bits (285), Expect = 5.200e-22 Identity = 84/231 (36.36%), Postives = 123/231 (53.25%), Query Frame = 0 Query: 1 MAGSNKSGTGLVRLYLNAYNLSQTGLWVMVLVSTIKALLADVHDYVGVWTEAGPATKLAVGGAWLELVHVFLGLAGGSVSSAFWQNFGRSFVLFAIVDAFNTPTGLAWLPALLLAWSGGELIRYPFYLLGSN---APPFLVWLRYSAFIVLYPLGMASEVALLLRTLPEARAAVEKEDRFCMRLPWAEEWR-AFNFYYFLVFGLLVLYPFAIPYMLFYMVKQRKKRLGGSK 228 MAG G+ + RLYL+ YN WV VL T LLA H+ V+ A A LE++H LG VS+ Q GR FV + I+ +F + +L+L+WS E+IRY F+ L P + +WLRYS F VLYP+G+ SE+ L+ LP +A+ ++C+ +P ++W +F++YYF + L +LY PY+ YM+ QRKK L +K Sbjct: 1 MAG---GGSVVQRLYLSVYNWVVFYGWVRVLYCTTLTLLAKGHE--SVYEAVEQPLLFAQTSALLEILHAILGFVRSPVSATLPQLSGRLFVTWGILWSFAETHSHVLVTSLVLSWSITEVIRYSFFGLKEAFGIIPYWHLWLRYSTFFVLYPIGLVSELGLVYAALPSIKAS----GKYCLEMP--DKWNFSFSYYYFCII-LSILYIPGFPYLFHYMLTQRKKALSKAK 219
BLAST of NO02G00050 vs. NCBI_GenBank
Match: XP_015621198.1 (PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like [Oryza sativa Japonica Group] >XP_015621199.1 PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like [Oryza sativa Japonica Group]) HSP 1 Score: 114.0 bits (284), Expect = 6.800e-22 Identity = 82/224 (36.61%), Postives = 122/224 (54.46%), Query Frame = 0 Query: 8 GTGLVRLYLNAYNLSQTGLWVMVLVSTIKALLADVHDYVGVWTEAGPATKLAVGGAWLELVHVFLGLAGGSVSSAFWQNFGRSFVLFAIVDAFNTPTGLAWLPALLLAWSGGELIRYPFYLLGSN---APPFLVWLRYSAFIVLYPLGMASEVALLLRTLPEARAAVEKEDRFCMRLPWAEEWR-AFNFYYFLVFGLLVLYPFAIPYMLFYMVKQRKKRLGGSK 228 G+ L RLY + YN W V +S I ALL D H+ V+ A A +E++H LGL VSS Q GR F+ + I+ +F + L+++WS E+IRY F+ + + P +L+WLRYS FIV YP+GM SEV L+ P +A+ +++C+ +P +W +F+++YF F L+ LY PY+L +MV QRKK L +K Sbjct: 25 GSVLRRLYFSVYNWVVFIGWAQVSLSMILALLDDGHE--AVYAAIERHLLFAQTAAIMEILHSILGLVRSPVSSTLPQITGRLFITWGILWSFPETHSHILVTPLIISWSITEVIRYSFFGIKESFGFTPSWLLWLRYSTFIVCYPVGMVSEVGLIYIAFPFMKAS----EKYCIGMP--NKWNFSFDYFYFSTF-LMALYVPVFPYLLRHMVAQRKKALSKAK 239
BLAST of NO02G00050 vs. NCBI_GenBank
Match: EEC76909.1 (hypothetical protein OsI_15146 [Oryza sativa Indica Group]) HSP 1 Score: 112.1 bits (279), Expect = 2.600e-21 Identity = 77/224 (34.38%), Postives = 123/224 (54.91%), Query Frame = 0 Query: 8 GTGLVRLYLNAYNLSQTGLWVMVLVSTIKALLADVHDYVGVWTEAGPATKLAVGGAWLELVHVFLGLAGGSVSSAFWQNFGRSFVLFAIVDAFNTPTGLAWLPALLLAWSGGELIRYPFYLLGSN---APPFLVWLRYSAFIVLYPLGMASEVALLLRTLPEARAAVEKEDRFCMRLPWAEEWR-AFNFYYFLVFGLLVLYPFAIPYMLFYMVKQRKKRLGGSK 228 G+ + RLYL+ YN + W VL + LL H+ V+ + A A+LE++H +GL VS+ Q R F+ + I+ +F + +L+++WS E+IRY F+ + AP +L+WLRYS F+VLYP G++SEV L+ LP +A+ +++C+R+P +W +F+F+Y + L V P P+M YM+ QRKK L +K Sbjct: 5 GSAVRRLYLSVYNWAVFFGWAQVLYYAVTMLLESGHE--AVYAAVERPLQFAQTAAFLEILHGLVGLVRSPVSATLPQIGSRLFLTWGILWSFPETHSHILVTSLVISWSITEIIRYSFFGMKEAFGFAPSWLLWLRYSTFMVLYPTGISSEVGLIYIALPYMKAS----EKYCLRMP--NKWNFSFDFFYASILSLAVYVP-GSPHMFTYMLAQRKKALAKAK 219
BLAST of NO02G00050 vs. NCBI_GenBank
Match: PAN32270.1 (hypothetical protein PAHAL_E03977 [Panicum hallii]) HSP 1 Score: 112.1 bits (279), Expect = 2.600e-21 Identity = 82/231 (35.50%), Postives = 122/231 (52.81%), Query Frame = 0 Query: 1 MAGSNKSGTGLVRLYLNAYNLSQTGLWVMVLVSTIKALLADVHDYVGVWTEAGPATKLAVGGAWLELVHVFLGLAGGSVSSAFWQNFGRSFVLFAIVDAFNTPTGLAWLPALLLAWSGGELIRYPFYLLGSN---APPFLVWLRYSAFIVLYPLGMASEVALLLRTLPEARAAVEKEDRFCMRLPWAEEWR-AFNFYYFLVFGLLVLYPFAIPYMLFYMVKQRKKRLGGSK 228 MAG G+ + RLYL+ YN WV VL T LLA H+ V+ A A LE++H +G VS+ Q GR FV + I+ +F + +L+L+WS E+IRY F+ L P + +WLRYS F V YP+G+ SE+ L+ LP +A+ ++C+ +P ++W +F++YYF + L +LY PY+ YM+ QRKK L +K Sbjct: 1 MAG---GGSVVQRLYLSVYNWVVFYGWVQVLYCTTWTLLAKGHE--SVYEAVEQPLLFAQTSALLEILHAIIGFVRSPVSATLPQLSGRLFVTWGILWSFAETHSHVLVTSLVLSWSITEVIRYSFFGLKEAFGIIPYWHLWLRYSTFFVFYPIGLVSELGLVYAALPSIKAS----GKYCLEMP--DKWNFSFSYYYFCII-LSILYIPGFPYLFHYMLTQRKKALSKAK 219
BLAST of NO02G00050 vs. NCBI_GenBank
Match: XP_015633753.1 (PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A [Oryza sativa Japonica Group] >XP_015633754.1 PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A [Oryza sativa Japonica Group] >Q7XSZ4.2 RecName: Full=Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A; AltName: Full=3-hydroxyacyl-CoA dehydratase PASTICCINO 2A; Short=HACD; Short=PAS2A; AltName: Full=Protein tyrosine phosphatase-like protein >CAE01738.2 OSJNBb0056F09.1 [Oryza sativa Japonica Group] >CAD39891.2 OSJNBb0067G11.14 [Oryza sativa Japonica Group] >BAF14258.1 Os04g0271200 [Oryza sativa Japonica Group] >BAG87283.1 unnamed protein product [Oryza sativa Japonica Group] >EEE60642.1 hypothetical protein OsJ_14083 [Oryza sativa Japonica Group] >BAS88329.1 Os04g0271200 [Oryza sativa Japonica Group]) HSP 1 Score: 112.1 bits (279), Expect = 2.600e-21 Identity = 76/224 (33.93%), Postives = 123/224 (54.91%), Query Frame = 0 Query: 8 GTGLVRLYLNAYNLSQTGLWVMVLVSTIKALLADVHDYVGVWTEAGPATKLAVGGAWLELVHVFLGLAGGSVSSAFWQNFGRSFVLFAIVDAFNTPTGLAWLPALLLAWSGGELIRYPFYLLGSN---APPFLVWLRYSAFIVLYPLGMASEVALLLRTLPEARAAVEKEDRFCMRLPWAEEWR-AFNFYYFLVFGLLVLYPFAIPYMLFYMVKQRKKRLGGSK 228 G+ + RLYL+ YN + W VL + LL H+ V+ + A A+LE++H +GL VS+ Q R F+ + I+ +F + +L+++WS E+IRY F+ + AP +L+WLRYS F+VLYP G++SEV L+ LP +A+ +++C+R+P +W +F+F+Y + L + P P+M YM+ QRKK L +K Sbjct: 5 GSAVRRLYLSVYNWAVFFGWAQVLYYAVTTLLESGHE--AVYAAVERPLQFAQTAAFLEILHGLVGLVRSPVSATLPQIGSRLFLTWGILWSFPETHSHILVTSLVISWSITEIIRYSFFGMKEAFGFAPSWLLWLRYSTFMVLYPTGISSEVGLIYIALPYMKAS----EKYCLRMP--NKWNFSFDFFYASILSLAIYVP-GSPHMFTYMLAQRKKALAKAK 219
BLAST of NO02G00050 vs. NCBI_GenBank
Match: XP_024028577.1 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 [Morus notabilis]) HSP 1 Score: 112.1 bits (279), Expect = 2.600e-21 Identity = 81/222 (36.49%), Postives = 123/222 (55.41%), Query Frame = 0 Query: 13 RLYLNAYNLSQTGLWVMVLVSTIKALLADVHDYVGVWTEAGPATKLAVGGAWLELVHVFLGLAGGSVSSAFWQNFGRSFVLFAIVDAFNTPTGLAWLPALLLAWSGGELIRYPFY----LLGSNAPPFLVWLRYSAFIVLYPLGMASEVALLLRTLPEARAAVEKEDRFCMRLPWAEEWR-AFNFYY--FLVFGLLVLYPFAIPYMLFYMVKQRKKRLGGSK 228 R+YL YN + W VL +K L H+ GV+ LA A LE++H +GL +++ Q R +V + I+ +F + +L+ +WS E+IRY F+ LGS AP +L+WLRYS F+VLYP G+ASEV L+ LP ++K +++C+R+P +W +F+++Y LVFG +Y P+M YM+KQRK+ L SK Sbjct: 10 RVYLTLYNWAALVGWFQVLYLAVKTLKESGHE--GVYDAVERPLLLAQSAAVLEILHGLVGLVRSPITATLPQISSRLYVTWGILWSFPEIRNHILVSSLVTSWSITEIIRYSFFGMKEALGS-APSWLMWLRYSTFLVLYPTGIASEVGLIYVALP----YIQKSEKYCIRMP--NKWNFSFDYFYAALLVFG---IYVPGGPHMYSYMLKQRKRALSKSK 219
BLAST of NO02G00050 vs. NCBI_GenBank
Match: EEC69954.1 (hypothetical protein OsI_00412 [Oryza sativa Indica Group]) HSP 1 Score: 110.9 bits (276), Expect = 5.700e-21 Identity = 77/224 (34.38%), Postives = 121/224 (54.02%), Query Frame = 0 Query: 8 GTGLVRLYLNAYNLSQTGLWVMVLVSTIKALLADVHDYVGVWTEAGPATKLAVGGAWLELVHVFLGLAGGSVSSAFWQNFGRSFVLFAIVDAFNTPTGLAWLPALLLAWSGGELIRYPFYLLGSN---APPFLVWLRYSAFIVLYPLGMASEVALLLRTLPEARAAVEKEDRFCMRLPWAEEWR-AFNFYYFLVFGLLVLYPFAIPYMLFYMVKQRKKRLGGSK 228 G+ + RLYL+ YN + W VL + LL H+ V+ + A A+LE++H +GL VS+ Q R F+ + I+ +F + +L+++WS E+IRY F+ + AP +L+WLRYS F+VLYP G++SEV L+ LP +A +++C+R+P +W +F+F Y + L V P P+M YM+ QRKK L +K Sbjct: 5 GSAVRRLYLSVYNWAVFFGWAQVLYYAVTTLLESGHE--AVYAAVERPLQFAQTAAFLEILHGLVGLVRSPVSATLPQIGSRLFLTWGILWSFPETHSHILVTSLVISWSITEIIRYSFFGMKETFGFAPSWLLWLRYSTFMVLYPTGISSEVGLIYIALPYMKAT----EKYCLRMP--NKWNFSFDFSYASILSLAVYVP-GSPHMFTYMLAQRKKALAKAK 219
BLAST of NO02G00050 vs. NCBI_GenBank
Match: XP_015636440.1 (PREDICTED: geranylgeranyl transferase type-1 subunit beta [Oryza sativa Japonica Group]) HSP 1 Score: 110.9 bits (276), Expect = 5.700e-21 Identity = 77/224 (34.38%), Postives = 121/224 (54.02%), Query Frame = 0 Query: 8 GTGLVRLYLNAYNLSQTGLWVMVLVSTIKALLADVHDYVGVWTEAGPATKLAVGGAWLELVHVFLGLAGGSVSSAFWQNFGRSFVLFAIVDAFNTPTGLAWLPALLLAWSGGELIRYPFYLLGSN---APPFLVWLRYSAFIVLYPLGMASEVALLLRTLPEARAAVEKEDRFCMRLPWAEEWR-AFNFYYFLVFGLLVLYPFAIPYMLFYMVKQRKKRLGGSK 228 G+ + RLYL+ YN + W VL + LL H+ V+ + A A+LE++H +GL VS+ Q R F+ + I+ +F + +L+++WS E+IRY F+ + AP +L+WLRYS F+VLYP G++SEV L+ LP +A +++C+R+P +W +F+F Y + L V P P+M YM+ QRKK L +K Sbjct: 395 GSAVRRLYLSVYNWAVFFGWAQVLYYAVTTLLESGHE--AVYAAVERPLQFAQTAAFLEILHGLVGLVRSPVSATLPQIGSRLFLTWGILWSFPETHSHILVTSLVISWSITEIIRYSFFGMKETFGFAPSWLLWLRYSTFMVLYPTGISSEVGLIYIALPYMKAT----EKYCLRMP--NKWNFSFDFSYASILSLAVYVP-GSPHMFTYMLAQRKKALAKAK 609
BLAST of NO02G00050 vs. NCBI_GenBank
Match: NP_001347560.1 (uncharacterized protein LOC111946217 [Oryza sativa Japonica Group] >Q5ZEJ0.1 RecName: Full=Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B; AltName: Full=3-hydroxyacyl-CoA dehydratase PASTICCINO 2B; Short=HACD; Short=PAS2B; AltName: Full=Protein tyrosine phosphatase-like protein >BAD61100.1 putative tyrosine phosphatase [Oryza sativa Japonica Group] >BAF03946.1 Os01g0150200 [Oryza sativa Japonica Group] >BAG87629.1 unnamed protein product [Oryza sativa Japonica Group] >BAS70413.1 Os01g0150200 [Oryza sativa Japonica Group]) HSP 1 Score: 110.9 bits (276), Expect = 5.700e-21 Identity = 77/224 (34.38%), Postives = 121/224 (54.02%), Query Frame = 0 Query: 8 GTGLVRLYLNAYNLSQTGLWVMVLVSTIKALLADVHDYVGVWTEAGPATKLAVGGAWLELVHVFLGLAGGSVSSAFWQNFGRSFVLFAIVDAFNTPTGLAWLPALLLAWSGGELIRYPFYLLGSN---APPFLVWLRYSAFIVLYPLGMASEVALLLRTLPEARAAVEKEDRFCMRLPWAEEWR-AFNFYYFLVFGLLVLYPFAIPYMLFYMVKQRKKRLGGSK 228 G+ + RLYL+ YN + W VL + LL H+ V+ + A A+LE++H +GL VS+ Q R F+ + I+ +F + +L+++WS E+IRY F+ + AP +L+WLRYS F+VLYP G++SEV L+ LP +A +++C+R+P +W +F+F Y + L V P P+M YM+ QRKK L +K Sbjct: 5 GSAVRRLYLSVYNWAVFFGWAQVLYYAVTTLLESGHE--AVYAAVERPLQFAQTAAFLEILHGLVGLVRSPVSATLPQIGSRLFLTWGILWSFPETHSHILVTSLVISWSITEIIRYSFFGMKETFGFAPSWLLWLRYSTFMVLYPTGISSEVGLIYIALPYMKAT----EKYCLRMP--NKWNFSFDFSYASILSLAVYVP-GSPHMFTYMLAQRKKALAKAK 219 The following BLAST results are available for this feature:
BLAST of NO02G00050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO02G00050 ID=NO02G00050|Name=NO02G00050|organism=Nannochloropsis oceanica|type=gene|length=2539bpback to top protein sequence of NO02G00050.1 >NO02G00050.1-protein ID=NO02G00050.1-protein|Name=NO02G00050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=252bpback to top Synonyms
Publications
|