NO19G01790.1, NO19G01790.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01790.1
Unique NameNO19G01790.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length762
Alignment locationchr19:536288..538079 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:536288..538079 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G01790.1 vs.
Match: WP_048866598.1 (tyrosine transporter [Scytonema tolypothrichoides]; KIJ85349.1 tyrosine transporter [Scytonema tolypothrichoides VB-61278])

HSP 1 Score: 97.4 bits (241), Expect = 6.600e-17
Identity = 66/191 (34.55%), Postives = 109/191 (57.07%), Query Frame = 0 
Query:   60 VVSSAALIAGCMIGAGVLALPSVTVHTGILPSSMAILSVWAYCAASGLLIGEVCINSKG--SSAHASYLKIAGATVGKGLASLAFGVFTIFQYFLLAAYISQGGALLDGFAHLLPSLHGLALPSSLPPTLPPLAAFTAAMAALFVGANQRTLENFNNVVVVGVVACFAALLLAGTSTVDPSLYNHVDFGAL 249
            V+ S AL+AG  +GAG+LALP+VT+ +G++PS++ +++VW Y   SGLLI EV +N+     S+ +  L +   T+GK  A +A G +    Y LL AY+SQGG +L      +     L + ++LP ++    AFT     +     +R +E  N+  V  V+A F  LL+ G++ +  S ++  ++ AL
Sbjct:   33 VLGSTALVAGTTVGAGILALPAVTLPSGVVPSTVLLVAVWLYTLVSGLLIAEVTLNTMRLVGSSSSGLLVMVERTLGKPSARVAGGAYLFLHYALLVAYVSQGGEILVSAVEKV-----LGVQNNLPASV-GTTAFTLLFGGIMYLGRERFIEKLNSAFVAIVLASFVGLLVLGSTQLKTSSFSFQNWSAL 217
The following BLAST results are available for this feature:
BLAST of NO19G01790.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_048866598.16.600e-1734.55tyrosine transporter [Scytonema tolypothrichoides]... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01790NO19G01790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01790.1NO19G01790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01790.1.cds1NO19G01790.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01790.1.cds2NO19G01790.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01790.1.cds3NO19G01790.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01790.1.cds4NO19G01790.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01790.1.cds5NO19G01790.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01790.1.cds6NO19G01790.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01790.1.cds7NO19G01790.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01790.1.cds8NO19G01790.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01790.1 ID=NO19G01790.1|Name=NO19G01790.1|organism=Nannochloropsis oceanica|type=mRNA|length=762bp
ATGTTTCTGCAACGTGGAGTCATGGGAGAGGCACGATTGAAAAGCGGTCC
TTCCTTCGATCACCTAGGGCGAGGCCTGGAGGACATGATAAGCGAGCTCC
AAGATCTGGACATAAAGCAACGGATGATGACGATGACGACAGCGATGGCG
TCAGCTTTGCCTCTCCCTGCGGCAGGGGTGGTTAGCAGCGCAGCCTTGAT
CGCCGGGTGCATGATTGGAGCGGGGGTGCTTGCCCTCCCTTCGGTGACGG
TGCACACGGGCATCCTGCCTTCGTCCATGGCAATATTGAGTGTATGGGCC
TACTGCGCTGCCTCCGGCCTCCTTATTGGGGAGGTGTGCATCAACAGCAA
GGGATCGAGCGCCCATGCTTCCTACTTGAAGATCGCGGGGGCGACCGTAG
GAAAGGGATTAGCATCCCTGGCCTTTGGGGTCTTCACTATCTTCCAATAC
TTCCTCCTCGCCGCGTATATCTCACAGGGCGGTGCCTTGTTGGATGGTTT
TGCCCACCTCCTTCCGAGCCTGCACGGGCTTGCCCTCCCTTCTTCCCTCC
CTCCTACCCTCCCTCCCCTGGCCGCCTTCACTGCCGCCATGGCCGCGCTT
TTTGTGGGAGCTAACCAACGAACCCTCGAGAACTTCAATAACGTGGTGGT
TGTGGGAGTAGTCGCCTGTTTCGCTGCCCTCCTCCTCGCAGGCACCAGCA
CCGTCGATCCCTCCCTATACAACCACGTGGATTTTGGCGCGCTGCAGAAG
AATGGAGGTTAG
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protein sequence of NO19G01790.1

>NO19G01790.1-protein ID=NO19G01790.1-protein|Name=NO19G01790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MFLQRGVMGEARLKSGPSFDHLGRGLEDMISELQDLDIKQRMMTMTTAMA
SALPLPAAGVVSSAALIAGCMIGAGVLALPSVTVHTGILPSSMAILSVWA
YCAASGLLIGEVCINSKGSSAHASYLKIAGATVGKGLASLAFGVFTIFQY
FLLAAYISQGGALLDGFAHLLPSLHGLALPSSLPPTLPPLAAFTAAMAAL
FVGANQRTLENFNNVVVVGVVACFAALLLAGTSTVDPSLYNHVDFGALQK
NGG*
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mRNA from alignment at chr19:536288..538079+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01790.1 ID=NO19G01790.1|Name=NO19G01790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1792bp|location=Sequence derived from alignment at chr19:536288..538079+ (Nannochloropsis oceanica)
ATGTTTCTGCAACGTGGAGTCATGGGAGGTAAAGCGATGAGGGACACTCA
CGGTTGCATAAGTGAACCAAACACTTTGTAACCTCGTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTTTCCCCCCTCGCCCAGAGGCACGATTGAAAAGCGG
TCCTTCCTTCGATCACCTAGGGCGAGGCCTGGAGGACATGATAAGCGAGC
TCCAAGATCTGGACATAAAGCAACGGATGATGACGATGACGACAGCGATG
GCGTCAGCTTTGCCTCTCCCTGCGGCAGGGGTGGTTAGCAGCGCAGCCTT
GATCGCCGGGTGCATGATTGGAGCGGGTGAGGAAAGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGTGGGTGCACATGGTACATGATTGCGGTTGGTGAGGA
GGAAGGAAGGAAGGGAGGGAGGAAGGTTCCGAAGCAATACATAGTTTGCT
CACCCCTCCCTCCCTCCCTCCCTCCCTCAGGGGTGCTTGCCCTCCCTTCG
GTGACGGTGCACACGGGCATCCTGCCTTCGTCCATGGCAATATTGAGTGT
ATGGGCCTACTGCGCTGCCTCCGGCCTCCTTATTGGGGAGGTGTGCATCA
ACAGCAAGGGTAGGTAGGGAGGGAGGGAGGGAGGGAGGTAAGCCCCGGCT
TATGATTGCTCACCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTTCCTC
CCTTCCTCCCTCAGGATCGAGCGCCCATGCTTCCTACTTGAAGATCGCGG
GGGCGACCGTAGGAAAGGGATTAGCATCCCTGGCCTTTGGGGTCTTCACT
ATCTTCCAATACTTCCTCCTCGCCGCGTATATCTCACAGGTACCTACCTA
CCTCCCTCCCTCCCTCCCTCCCTGACCCCCTCTTGATTCGATCTAACGTG
TTCCCGCCACGTCATGCTCACCCCTTCTCCTCCCCCCTTCTCCCTCCCTC
CCTCCCTAGGGCGGTGCCTTGTTGGATGGTTTTGCCCACCTCCTTCCGAG
CCTGCACGGGCTTGCCCTCCCTTCTTCCCTCCCTCCTACCCTCCCTCCCC
TGGCCGCCTTCACTGCCGCCATGGCCGCGCTTTTTGTGGGAGCTAACCAA
CGGTACGCCCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCCTCCTTCCCCC
CGTCCCTCGAGCCGACATTTTCACGTCCCTCCCTCTCCTATCCTACGCCC
ACCCTCCCCTCCCTCCCTCCATCCCTCAGAACCCTCGAGAACTTCAATAA
CGTGGTGGTTGTGGGAGTAGTCGCCTGTTTCGCTGCCCTCCTCCTCGCAG
GCACCAGCACCGTCGATCCCTCCCTATACAACCACGTGGATTTTGGCGCG
CTGCAGGTACTTAGGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTGAT
GCTCTGTATGGTACATCGTCGGACTGCTTCCCAGGGAGGGAAGCAGTCCG
ACGATGTACCATACAGAGCATCACACCCCATGAGCAGGATACCAGGTTTT
ATGCACTTAAATCATTCTGAGGCTTGTGCGGCTCCGACATACATGTCTAT
CATCAATCCCAAGTGAACTGTAGAAGAATGGTAAGGGTTACATGTATTTC
GAGTCGTCTCATTAGCACTGCCTCTCTAAATAAACTGAATCATCAATTGT
CAACATCGTCAATGTCCTCACTCTCCATTTTATTTACTGTACTTTTAAAT
TAAATTGTCGAGAATTGAAATATTTTTCTGTCCTAATTGTGCCTTCGATT
TTTCGACTCTCACTCCAATGCTCCAATTATCCAGGAGGTTAG
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Coding sequence (CDS) from alignment at chr19:536288..538079+

>NO19G01790.1 ID=NO19G01790.1|Name=NO19G01790.1|organism=Nannochloropsis oceanica|type=CDS|length=762bp|location=Sequence derived from alignment at chr19:536288..538079+ (Nannochloropsis oceanica)
ATGTTTCTGCAACGTGGAGTCATGGGAGAGGCACGATTGAAAAGCGGTCC
TTCCTTCGATCACCTAGGGCGAGGCCTGGAGGACATGATAAGCGAGCTCC
AAGATCTGGACATAAAGCAACGGATGATGACGATGACGACAGCGATGGCG
TCAGCTTTGCCTCTCCCTGCGGCAGGGGTGGTTAGCAGCGCAGCCTTGAT
CGCCGGGTGCATGATTGGAGCGGGGGTGCTTGCCCTCCCTTCGGTGACGG
TGCACACGGGCATCCTGCCTTCGTCCATGGCAATATTGAGTGTATGGGCC
TACTGCGCTGCCTCCGGCCTCCTTATTGGGGAGGTGTGCATCAACAGCAA
GGGATCGAGCGCCCATGCTTCCTACTTGAAGATCGCGGGGGCGACCGTAG
GAAAGGGATTAGCATCCCTGGCCTTTGGGGTCTTCACTATCTTCCAATAC
TTCCTCCTCGCCGCGTATATCTCACAGGGCGGTGCCTTGTTGGATGGTTT
TGCCCACCTCCTTCCGAGCCTGCACGGGCTTGCCCTCCCTTCTTCCCTCC
CTCCTACCCTCCCTCCCCTGGCCGCCTTCACTGCCGCCATGGCCGCGCTT
TTTGTGGGAGCTAACCAACGAACCCTCGAGAACTTCAATAACGTGGTGGT
TGTGGGAGTAGTCGCCTGTTTCGCTGCCCTCCTCCTCGCAGGCACCAGCA
CCGTCGATCCCTCCCTATACAACCACGTGGATTTTGGCGCGCTGCAGAAG
AATGGAGGTTAG
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Synonyms
Publications