NO19G01790, NO19G01790 (gene) Nannochloropsis oceanica

Overview
NameNO19G01790
Unique NameNO19G01790
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1792
Alignment locationchr19:536288..538079 +

Link to JBrowse

Properties
Property NameValue
DescriptionTyrosine transporter
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:536288..538079 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0015173aromatic amino acid transmembrane transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0015801aromatic amino acid transport
GO:0003333amino acid transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0005887integral component of plasma membrane
Vocabulary: INTERPRO
TermDefinition
IPR013059Trp_tyr_transpt
IPR018227Tryptophan/tyrosine_permease
Homology
[Close]
BLAST of NO19G01790 vs. NCBI_GenBank
Match: WP_096655849.1 (tyrosine transporter [Calothrix parasitica] >BAY82822.1 aromatic amino acid permease [Calothrix parasitica NIES-267])

HSP 1 Score: 92.8 bits (229), Expect = 1.600e-15
Identity = 68/191 (35.60%), Postives = 99/191 (51.83%), Query Frame = 0 
Query:   60 VVSSAALIAGCMIGAGVLALPSVTVHTGILPSSMAILSVWAYCAASGLLIGEVCINSKGSSAHAS--YLKIAGATVGKGLASLAFGVFTIFQYFLLAAYISQGGALLDGFAHLLPSLHGLALPSSXXXXXXXXXXXXXXMAALFVGANQRTLENFNNVVVVGVVACFAALLLAGTSTVDPSLYNHVDFGAL 249
            VV S ALIAG  +GAG+LALP+VT+ +G+LPS+  ++ VW Y   +GLLI EV +N    S  A+   L +  +T+G   A  A G +    Y LL AY+SQGG +      L+ ++ G+                      L++G   R +E  N+  VV V+  F  LLL G + V+P+     D+ AL
Sbjct:   33 VVGSTALIAGTTVGAGILALPAVTLPSGVLPSTALLIGVWLYTVLTGLLIAEVSLNGMRHSGRATNGLLAMVESTLGGMEARFAGGAYLFLHYALLIAYVSQGGEI------LISAIEGIWDLPDLPTWMGSTGFAVIFGTILYLG-RDRFIERLNSFFVVVVITSFIGLLLLGATQVNPNSLLSQDWTAL 216
[Close]
BLAST of NO19G01790 vs. NCBI_GenBank
Match: WP_096687539.1 (MULTISPECIES: tyrosine transporter [Calothrix] >BAZ11156.1 aromatic amino acid permease [Calothrix sp. NIES-4071] >BAZ57302.1 aromatic amino acid permease [Calothrix sp. NIES-4105])

HSP 1 Score: 92.0 bits (227), Expect = 2.800e-15
Identity = 70/194 (36.08%), Postives = 97/194 (50.00%), Query Frame = 0 
Query:   60 VVSSAALIAGCMIGAGVLALPSVTVHTGILPSSMAILSVWAYCAASGLLIGEVCINSKGSSAHASYLKIAGATVGKGLASLAFGVFTIFQYFLLAAYISQGG-ALLDGFAHLLPSLHGLALPSSXXXXXXXXXXXXXXMAALFVG----ANQRTLENFNNVVVVGVVACFAALLLAGTSTVDPSLYNHVDFGAL 249
            V+ S ALIAG  +GAG+LALP+VT+ +G+ PS++ +++VW Y   SGLLI EV ++   S     +L +    +GK  A LA G +    Y LL AYI+QGG  LL      LP   G  +                  A LF G       + +E  NN +V  V+A FA LLL  +  V  S +   D+  L
Sbjct:   24 VLGSTALIAGTTVGAGILALPTVTLPSGVAPSTVLLIAVWLYALVSGLLIAEVSLDGMRSGTFFGFLAMVENILGKPGAILAGGAYLFLHYGLLVAYIAQGGEILLRALPVKLPDWAGTTI-----------------FALLFGGIMYFGRPKLIEKLNNALVFAVIASFAGLLLLASRQVHLSQFIFQDWTQL 200
[Close]
BLAST of NO19G01790 vs. NCBI_GenBank
Match: WP_036265230.1 (tyrosine transporter [Mastigocoleus testarum])

HSP 1 Score: 91.7 bits (226), Expect = 3.600e-15
Identity = 70/191 (36.65%), Postives = 99/191 (51.83%), Query Frame = 0 
Query:   60 VVSSAALIAGCMIGAGVLALPSVTVHTGILPSSMAILSVWAYCAASGLLIGEVCINSK--GSSAHASYLKIAGATVGKGLASLAFGVFTIFQYFLLAAYISQGGALLDGFAHLLPSLHGLALPSSXXXXXXXXXXXXXXMAALFVGANQRTLENFNNVVVVGVVACFAALLLAGTSTVDPSLYNHVDFGAL 249
            V  SAAL+AG  +GAG+LALP+VT+ +GI+PS+  + +VW Y   SGLLI EV +N        +  +L I   T+G     LA G F  F Y LL AYI++GG +L G A  L  + G ALP+                 ++   A  R +E  N++ VV VV  F  L+    + + P  +   D+ AL
Sbjct:   36 VFGSAALLAGNTVGAGILALPAVTLPSGIVPSTALLFAVWLYVLISGLLIAEVTLNRMRVEGRPNLGFLSIVEGTLGTFTGRLAGGAFLFFHYSLLVAYIARGGDILLGGASHLLGMDG-ALPT-----WVGAIMFTSLFGSILYLARDRFVEKLNSIFVVIVVFSFLGLVFLEGTQIHPVRFLFQDWRAL 220
[Close]
BLAST of NO19G01790 vs. NCBI_GenBank
Match: WP_048866598.1 (tyrosine transporter [Scytonema tolypothrichoides] >KIJ85349.1 tyrosine transporter [Scytonema tolypothrichoides VB-61278])

HSP 1 Score: 91.7 bits (226), Expect = 3.600e-15
Identity = 64/191 (33.51%), Postives = 106/191 (55.50%), Query Frame = 0 
Query:   60 VVSSAALIAGCMIGAGVLALPSVTVHTGILPSSMAILSVWAYCAASGLLIGEVCINSKG--SSAHASYLKIAGATVGKGLASLAFGVFTIFQYFLLAAYISQGGALLDGFAHLLPSLHGLALPSSXXXXXXXXXXXXXXMAALFVGANQRTLENFNNVVVVGVVACFAALLLAGTSTVDPSLYNHVDFGAL 249
            V+ S AL+AG  +GAG+LALP+VT+ +G++PS++ +++VW Y   SGLLI EV +N+     S+ +  L +   T+GK  A +A G +    Y LL AY+SQGG +L      +  +    LP+S                 +++G  +R +E  N+  V  V+A F  LL+ G++ +  S ++  ++ AL
Sbjct:   33 VLGSTALVAGTTVGAGILALPAVTLPSGVVPSTVLLVAVWLYTLVSGLLIAEVTLNTMRLVGSSSSGLLVMVERTLGKPSARVAGGAYLFLHYALLVAYVSQGGEILVSAVEKVLGVQN-NLPASVGTTAFTLLFG----GIMYLG-RERFIEKLNSAFVAIVLASFVGLLVLGSTQLKTSSFSFQNWSAL 217
[Close]
BLAST of NO19G01790 vs. NCBI_GenBank
Match: KST65414.1 (tyrosine transporter [Mastigocoleus testarum BC008] >KST70491.1 tyrosine transporter [Mastigocoleus testarum BC008])

HSP 1 Score: 91.7 bits (226), Expect = 3.600e-15
Identity = 70/191 (36.65%), Postives = 99/191 (51.83%), Query Frame = 0 
Query:   60 VVSSAALIAGCMIGAGVLALPSVTVHTGILPSSMAILSVWAYCAASGLLIGEVCINSK--GSSAHASYLKIAGATVGKGLASLAFGVFTIFQYFLLAAYISQGGALLDGFAHLLPSLHGLALPSSXXXXXXXXXXXXXXMAALFVGANQRTLENFNNVVVVGVVACFAALLLAGTSTVDPSLYNHVDFGAL 249
            V  SAAL+AG  +GAG+LALP+VT+ +GI+PS+  + +VW Y   SGLLI EV +N        +  +L I   T+G     LA G F  F Y LL AYI++GG +L G A  L  + G ALP+                 ++   A  R +E  N++ VV VV  F  L+    + + P  +   D+ AL
Sbjct:   29 VFGSAALLAGNTVGAGILALPAVTLPSGIVPSTALLFAVWLYVLISGLLIAEVTLNRMRVEGRPNLGFLSIVEGTLGTFTGRLAGGAFLFFHYSLLVAYIARGGDILLGGASHLLGMDG-ALPT-----WVGAIMFTSLFGSILYLARDRFVEKLNSIFVVIVVFSFLGLVFLEGTQIHPVRFLFQDWRAL 213
[Close]
BLAST of NO19G01790 vs. NCBI_GenBank
Match: WP_085729134.1 (tyrosine transporter [Cylindrospermopsis raciborskii] >OSO88081.1 tyrosine transporter [Cylindrospermopsis raciborskii CENA303])

HSP 1 Score: 90.9 bits (224), Expect = 6.200e-15
Identity = 67/184 (36.41%), Postives = 94/184 (51.09%), Query Frame = 0 
Query:   60 VVSSAALIAGCMIGAGVLALPSVTVHTGILPSSMAILSVWAYCAASGLLIGEVCINSKGSS--AHASYLKIAGATVGKGLASLAFGVFTIFQYFLLAAYISQGG-ALLDGFAHLLPSLHGLALPSSXXXXXXXXXXXXXXMAALFVGANQRTLENFNNVVVVGVVACFAALLLAGTSTVDPSLY 241
            ++SS ALI G  +GAG+LALP+VT+ +G+LPS++AI  VW Y   SGLLI E+ +N  G    AH  +L I    +G   A +A   + +  Y LL AYIS+GG  L+  FA +    HGL                      +     ++ +E  NNV+V  V+  F  LL  G   V  SL+
Sbjct:   19 LLSSTALITGTTVGAGILALPAVTLPSGVLPSNVAICLVWLYTLLSGLLIAEITVNVMGMEGIAHIGFLAIVEKKLGSLGARIAGTAYLVQHYALLVAYISRGGDILISTFAKICNLDHGL-------PHWLGTTTFTILFGGVLYWGKEKFVEKLNNVLVGIVIVSFMGLLFLGVGQVKSSLF 195
[Close]
BLAST of NO19G01790 vs. NCBI_GenBank
Match: EFA74018.1 (Tryptophan/tyrosine permease family protein [Raphidiopsis brookii D9])

HSP 1 Score: 89.7 bits (221), Expect = 1.400e-14
Identity = 66/184 (35.87%), Postives = 94/184 (51.09%), Query Frame = 0 
Query:   60 VVSSAALIAGCMIGAGVLALPSVTVHTGILPSSMAILSVWAYCAASGLLIGEVCINSKGSS--AHASYLKIAGATVGKGLASLAFGVFTIFQYFLLAAYISQGG-ALLDGFAHLLPSLHGLALPSSXXXXXXXXXXXXXXMAALFVGANQRTLENFNNVVVVGVVACFAALLLAGTSTVDPSLY 241
            ++SS ALI G  +GAG+LALP+VT+ +G+LPS++AI  VW Y   SGLLI E+ +N  G    AH  +L I    +G   A +A   + +  Y LL AYIS+GG  L+  FA +    HGL                      +     ++ +E  NN++V  V+  F  LL  G   V  SL+
Sbjct:   31 LLSSTALITGTTVGAGILALPAVTLPSGVLPSNVAICLVWLYTLLSGLLIAEITVNVMGMEGIAHIGFLAIVEKKLGSLGARIAGTAYLVQHYALLVAYISRGGDILISTFAKICNLDHGL-------PHWLGTTTFTILFGGVLYWGKEKFVEKLNNLLVGIVIVSFMGLLFLGVGQVKSSLF 207
[Close]
BLAST of NO19G01790 vs. NCBI_GenBank
Match: WP_050773273.1 (tyrosine transporter [Raphidiopsis brookii])

HSP 1 Score: 89.7 bits (221), Expect = 1.400e-14
Identity = 66/184 (35.87%), Postives = 94/184 (51.09%), Query Frame = 0 
Query:   60 VVSSAALIAGCMIGAGVLALPSVTVHTGILPSSMAILSVWAYCAASGLLIGEVCINSKGSS--AHASYLKIAGATVGKGLASLAFGVFTIFQYFLLAAYISQGG-ALLDGFAHLLPSLHGLALPSSXXXXXXXXXXXXXXMAALFVGANQRTLENFNNVVVVGVVACFAALLLAGTSTVDPSLY 241
            ++SS ALI G  +GAG+LALP+VT+ +G+LPS++AI  VW Y   SGLLI E+ +N  G    AH  +L I    +G   A +A   + +  Y LL AYIS+GG  L+  FA +    HGL                      +     ++ +E  NN++V  V+  F  LL  G   V  SL+
Sbjct:   19 LLSSTALITGTTVGAGILALPAVTLPSGVLPSNVAICLVWLYTLLSGLLIAEITVNVMGMEGIAHIGFLAIVEKKLGSLGARIAGTAYLVQHYALLVAYISRGGDILISTFAKICNLDHGL-------PHWLGTTTFTILFGGVLYWGKEKFVEKLNNLLVGIVIVSFMGLLFLGVGQVKSSLF 195
[Close]
BLAST of NO19G01790 vs. NCBI_GenBank
Match: WP_017744457.1 (hypothetical protein [Scytonema hofmannii] >KYC41444.1 tyrosine transporter [Scytonema hofmannii PCC 7110])

HSP 1 Score: 89.0 bits (219), Expect = 2.300e-14
Identity = 67/191 (35.08%), Postives = 100/191 (52.36%), Query Frame = 0 
Query:   60 VVSSAALIAGCMIGAGVLALPSVTVHTGILPSSMAILSVWAYCAASGLLIGEVCINSKGSSAHAS--YLKIAGATVGKGLASLAFGVFTIFQYFLLAAYISQGGALLDGFAHLLPSLHGLALPSSXXXXXXXXXXXXXXMAALFVGANQRTLENFNNVVVVGVVACFAALLLAGTSTVDPSLYNHVDFGAL 249
            V+ S ALIAG  IGAG+LALP+VT+ +G++PS++ ++ VW Y   SGLLI EV +N+       S   L +   T+G   A +A G +    Y LL AY+SQGG +L      L  LH + LP+                  L++G  ++ +E  N+  V  V+  F  LL  G + ++ S +   D+ AL
Sbjct:   33 VLGSTALIAGTTIGAGILALPAVTLPSGVVPSTVLLIGVWLYALVSGLLIAEVALNAMRRVGRPSLGLLVMVERTLGSLAARIAGGAYLFLHYALLVAYVSQGGDILVSATEKLLGLHHV-LPT----WIGTTTFTLLFGGILYLG-REKFIEKLNSAFVAIVLTSFVGLLFLGVTHINISSFFFQDWKAL 217
[Close]
BLAST of NO19G01790 vs. NCBI_GenBank
Match: WP_010477163.1 (tyrosine transporter [Acaryochloris sp. CCMEE 5410])

HSP 1 Score: 88.6 bits (218), Expect = 3.100e-14
Identity = 66/191 (34.55%), Postives = 99/191 (51.83%), Query Frame = 0 
Query:   62 SSAALIAGCMIGAGVLALPSVTVHTGILPSSMAILSVWAYCAASGLLIGEV---CINSKGSSAHASYLKIAGATVGKGLASLAFGVFTIFQYFLLAAYISQGGALLD-GFAHLLPSLHGLALPSSXXXXXXXXXXXXXXMAALFVGANQRTLENFNNVVVVGVVACFAALLLAGTSTVDPSLYNHVDFGAL 249
            S+ AL+AG  +GAG+LALP++T   G LPS++ ++ VW Y   + LL+ EV   C+   G  A+   L +   T+GK +A++A G +    Y LL AY+SQGG +L  G AHL+    G A+PS                  L    +   +  FN+  V  V+  F ALL+   + VDP    H ++ A+
Sbjct:   27 SAIALVAGTTVGAGILALPAMTHPAGFLPSTVMLMVVWVYALVAALLLAEVNVFCMRRSG-QANMGLLGMVERTLGKPIANVAGGAYLFLHYALLVAYLSQGGDILSGGLAHLV----GGAVPS-----WIGPSVFALIFGGLLYWGSDHLVAKFNSTFVGIVIITFVALLVLSGTQVDPGELVHQNWPAI 207
The following BLAST results are available for this feature:
BLAST of NO19G01790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
WP_096655849.11.600e-1535.60tyrosine transporter [Calothrix parasitica] >BAY82... [more]
WP_096687539.12.800e-1536.08MULTISPECIES: tyrosine transporter [Calothrix] >BA... [more]
WP_036265230.13.600e-1536.65tyrosine transporter [Mastigocoleus testarum][more]
WP_048866598.13.600e-1533.51tyrosine transporter [Scytonema tolypothrichoides]... [more]
KST65414.13.600e-1536.65tyrosine transporter [Mastigocoleus testarum BC008... [more]
WP_085729134.16.200e-1536.41tyrosine transporter [Cylindrospermopsis raciborsk... [more]
EFA74018.11.400e-1435.87Tryptophan/tyrosine permease family protein [Raphi... [more]
WP_050773273.11.400e-1435.87tyrosine transporter [Raphidiopsis brookii][more]
WP_017744457.12.300e-1435.08hypothetical protein [Scytonema hofmannii] >KYC414... [more]
WP_010477163.13.100e-1434.55tyrosine transporter [Acaryochloris sp. CCMEE 5410... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01790.1NO19G01790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01790.1NO19G01790.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01790 ID=NO19G01790|Name=NO19G01790|organism=Nannochloropsis oceanica|type=gene|length=1792bp
ATGTTTCTGCAACGTGGAGTCATGGGAGgtaaagcgatgagggacactca
cggttgcataagtgaaccaaacactttgtaacctcgtccctccctccctc
cctccctccctccctttcccccctcgcccagAGGCACGATTGAAAAGCGG
TCCTTCCTTCGATCACCTAGGGCGAGGCCTGGAGGACATGATAAGCGAGC
TCCAAGATCTGGACATAAAGCAACGGATGATGACGATGACGACAGCGATG
GCGTCAGCTTTGCCTCTCCCTGCGGCAGGGGTGGTTAGCAGCGCAGCCTT
GATCGCCGGGTGCATGATTGGAGCGGgtgaggaaagagggagggagggag
ggagggagggagggtgggtgcacatggtacatgattgcggttggtgagga
ggaaggaaggaagggagggaggaaggttccgaagcaatacatagtttgct
cacccctccctccctccctccctccctcagGGGTGCTTGCCCTCCCTTCG
GTGACGGTGCACACGGGCATCCTGCCTTCGTCCATGGCAATATTGAGTGT
ATGGGCCTACTGCGCTGCCTCCGGCCTCCTTATTGGGGAGGTGTGCATCA
ACAGCAAGGgtaggtagggagggagggagggagggaggtaagccccggct
tatgattgctcacccctccctccctccctccctccctcccttccttcctc
ccttcctccctcagGATCGAGCGCCCATGCTTCCTACTTGAAGATCGCGG
GGGCGACCGTAGGAAAGGGATTAGCATCCCTGGCCTTTGGGGTCTTCACT
ATCTTCCAATACTTCCTCCTCGCCGCGTATATCTCACAGgtacctaccta
cctccctccctccctccctccctgaccccctcttgattcgatctaacgtg
ttcccgccacgtcatgctcaccccttctcctccccccttctccctccctc
cctccctagGGCGGTGCCTTGTTGGATGGTTTTGCCCACCTCCTTCCGAG
CCTGCACGGGCTTGCCCTCCCTTCTTCCCTCCCTCCTACCCTCCCTCCCC
TGGCCGCCTTCACTGCCGCCATGGCCGCGCTTTTTGTGGGAGCTAACCAA
CGgtacgccccctccctccctccctccctccctccccccctccttccccc
cgtccctcgagccgacattttcacgtccctccctctcctatcctacgccc
accctcccctccctccctccatccctcagAACCCTCGAGAACTTCAATAA
CGTGGTGGTTGTGGGAGTAGTCGCCTGTTTCGCTGCCCTCCTCCTCGCAG
GCACCAGCACCGTCGATCCCTCCCTATACAACCACGTGGATTTTGGCGCG
CTGCAGgtacttaggccctccctccctccctccctccctccctctctgat
gctctgtatggtacatcgtcggactgcttcccagggagggaagcagtccg
acgatgtaccatacagagcatcacaccccatgagcaggataccaggtttt
atgcacttaaatcattctgaggcttgtgcggctccgacatacatgtctat
catcaatcccaagtgaactgtagAAGAATGgtaagggttacatgtatttc
gagtcgtctcattagcactgcctctctaaataaactgaatcatcaattgt
caacatcgtcaatgtcctcactctccattttatttactgtacttttaaat
taaattgtcgagaattgaaatatttttctgtcctaattgtgccttcgatt
tttcgactctcactccaatgctccaattatccagGAGGTTAG
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protein sequence of NO19G01790.1

>NO19G01790.1-protein ID=NO19G01790.1-protein|Name=NO19G01790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MFLQRGVMGEARLKSGPSFDHLGRGLEDMISELQDLDIKQRMMTMTTAMA
SALPLPAAGVVSSAALIAGCMIGAGVLALPSVTVHTGILPSSMAILSVWA
YCAASGLLIGEVCINSKGSSAHASYLKIAGATVGKGLASLAFGVFTIFQY
FLLAAYISQGGALLDGFAHLLPSLHGLALPSSLPPTLPPLAAFTAAMAAL
FVGANQRTLENFNNVVVVGVVACFAALLLAGTSTVDPSLYNHVDFGALQK
NGG*
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Synonyms
Publications