NO19G01470.1, NO19G01470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01470.1
Unique NameNO19G01470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1590
Alignment locationchr19:448697..450286 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:448697..450286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G01470.1 vs.
Match: EWM23639.1 (hypothetical protein Naga_100165g1 [Nannochloropsis gaditana])

HSP 1 Score: 288.1 bits (736), Expect = 5.500e-74
Identity = 200/412 (48.54%), Postives = 250/412 (60.68%), Query Frame = 0 
Query:    1 MSSLLEPKLLLHRKLSSTWSSAELAAYLESKPSFLSDISNVFRTLDHAIKLRVLLAFRALDSEEIAALPQEMLLSVLDEAGGDQDEWVKVCACMVRDALFGSSTGMTGPGSRPPAAEVTMDVFNKCGVL--AEGIDDEKEEEANEAIAAAAAAAVAGGSPAARARRRRCRVEPEPYFCPIEYLYLSEALIQRHHRQAPLTRKQNAHFVVGDLKDVEMEPIPDSSLMPSPSLPSSLPSSLPAPHSSSSSSSSSSSLLKAELKQPPPPSPRPNLLPRRPSSSSSSSSFSAP---------SSLLSQHH-HQNTKKDKPRLKIIKLDEIKTGGGNQAKIAARNEAVSQEFGSTQPLRFPIPKKTHQQQQQRTPPSPPPPPPPSSSSSSSPSSSLAESQELRKRNAAEALAGLLSP 401
            MSS LEPK LL+R L+STWSSA+ AA+L+SKP+FLS++ NVF TLD +IKLRVLLAFRALD  + A LP+++LL++LD+A GD DEWV VCA +VR+ L  ++  +TG  SR P AEV  DV  K G++  A G ++   E+  EA              AAR      +V PEPYFCP EYLYLSEALIQR HR APLTRKQNAHFV+GDL++VEMEP+PD+ LMPSP+     P SLP   +++SSSSSS        +QPPPP P      R P S    +  + P         SSLLS+    Q  + DKPRLK++KLDE+K+ G   A+ AARNEAVS EFGS QPLR   PK   ++         PP P           + +     LRK     A    L P
Sbjct:    1 MSSTLEPKFLLNRLLASTWSSADFAAFLKSKPAFLSEVLNVFSTLDQSIKLRVLLAFRALDKADAAKLPKDLLLAILDQAAGDGDEWVNVCASLVREVLVDATANVTGSNSRLPTAEVIADVLKKSGLVTAAPGEEESPVEKPAEATGTVEPKVADSSPKAAR------QVTPEPYFCPKEYLYLSEALIQRCHRSAPLTRKQNAHFVLGDLREVEMEPVPDTGLMPSPA-----PFSLPPSFATNSSSSSS-----LPHEQPPPPPPARAPPARPPPSGPRPAKLTVPAGARTSVPTSSLLSRAALSQQRRTDKPRLKLLKLDEVKS-GAKPARTAARNEAVSHEFGS-QPLRPQAPKDRREE---------PPRPSVVDDQPGGAGAGIEGGGGLRKARTHTASLPSLRP 385
The following BLAST results are available for this feature:
BLAST of NO19G01470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23639.15.500e-7448.54hypothetical protein Naga_100165g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01470NO19G01470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01470.1NO19G01470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01470.1.cds1NO19G01470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01470.1 ID=NO19G01470.1|Name=NO19G01470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1590bp
ATGTCATCTCTCCTGGAGCCCAAGCTACTCCTCCACAGGAAGCTAAGCAG
CACCTGGTCAAGCGCTGAACTAGCAGCTTACCTGGAAAGCAAACCCTCCT
TCCTCTCCGACATCTCCAATGTCTTCCGCACCCTTGATCACGCCATTAAG
CTACGCGTCCTTCTCGCCTTCCGTGCATTAGACTCCGAAGAAATCGCGGC
ATTACCCCAAGAAATGCTGCTGTCCGTGTTGGACGAGGCGGGCGGCGACC
AGGATGAGTGGGTTAAGGTCTGTGCATGCATGGTCCGCGACGCCCTCTTT
GGCAGCAGCACAGGTATGACAGGGCCTGGTTCCCGCCCTCCCGCAGCGGA
AGTGACGATGGACGTCTTCAACAAATGTGGGGTGCTTGCAGAGGGGATAG
ACGACGAAAAGGAGGAGGAGGCAAATGAAGCAATAGCAGCAGCAGCAGCA
GCAGCCGTGGCAGGAGGGTCACCTGCCGCACGCGCTCGCCGCCGCCGCTG
TCGCGTTGAACCAGAACCTTATTTCTGTCCCATTGAATATCTCTATCTCT
CCGAAGCCCTCATCCAGCGCCATCACCGTCAAGCCCCTCTGACCCGGAAG
CAAAACGCCCACTTCGTCGTTGGCGACTTGAAAGACGTCGAAATGGAACC
CATCCCCGACTCCAGCCTCATGCCCTCTCCCTCCCTCCCTTCCTCCCTCC
CTTCCTCCCTCCCGGCCCCCCACTCCTCCTCCTCCTCATCCTCATCCTCT
TCCTCCCTTCTCAAAGCTGAGCTAAAACAACCGCCCCCTCCATCACCACG
TCCCAACTTGCTCCCACGCCGTCCCTCCTCCTCCTCGTCCTCCTCATCTT
TCAGCGCCCCTTCCTCCCTTCTCTCCCAACACCACCACCAGAATACCAAA
AAAGATAAACCCCGCCTTAAAATTATTAAGCTCGACGAGATAAAAACAGG
GGGAGGCAACCAAGCCAAAATCGCAGCCCGAAACGAGGCAGTATCTCAAG
AATTTGGCAGCACCCAACCCCTCCGTTTCCCCATCCCTAAAAAAACGCAT
CAACAACAACAGCAACGGACGCCGCCATCACCACCACCTCCTCCTCCCCC
TTCTTCTTCTTCCTCCTCTTCTCCATCTTCTTCCTTGGCTGAATCCCAGG
AACTTCGCAAACGCAACGCCGCCGAGGCCCTCGCTGGTCTCCTCTCCCCC
CCTCCCTCGTCCCTCCCCCCGGCTGGTGCTGCTGGTGCTGCTGCTCCTAT
TACAGATGCCCTTGCTGATTACTATCGCATGAAGGCCAAAAGCAACCGAT
TGACTCCCCAAGATGACGAGCGCATCCGCAGTTTCTATTTGCATGGGGCA
AGGGAGGGAGGGAAGGAGGGCAAGGATGAGCAACAGAAGGTGGTGAAGAT
CAAAATTAACGAGGAGGAACAGGTGAAGGAGGATGGGAGTAGAGTGAAGG
AAAGTTTGTATCTGACGCTGAATTACGACAGTAAGAAGGCTGTGTTGTCG
AGAAAGGTGTCGAGGGCCAAGGAGGGAGGGAAGGTGGGAGGAGTAGGAGG
AGTAGGAGGAGAAGGAGGAGGTGGGATGGTGTCTTCGTAG
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protein sequence of NO19G01470.1

>NO19G01470.1-protein ID=NO19G01470.1-protein|Name=NO19G01470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=530bp
MSSLLEPKLLLHRKLSSTWSSAELAAYLESKPSFLSDISNVFRTLDHAIK
LRVLLAFRALDSEEIAALPQEMLLSVLDEAGGDQDEWVKVCACMVRDALF
GSSTGMTGPGSRPPAAEVTMDVFNKCGVLAEGIDDEKEEEANEAIAAAAA
AAVAGGSPAARARRRRCRVEPEPYFCPIEYLYLSEALIQRHHRQAPLTRK
QNAHFVVGDLKDVEMEPIPDSSLMPSPSLPSSLPSSLPAPHSSSSSSSSS
SSLLKAELKQPPPPSPRPNLLPRRPSSSSSSSSFSAPSSLLSQHHHQNTK
KDKPRLKIIKLDEIKTGGGNQAKIAARNEAVSQEFGSTQPLRFPIPKKTH
QQQQQRTPPSPPPPPPPSSSSSSSPSSSLAESQELRKRNAAEALAGLLSP
PPSSLPPAGAAGAAAPITDALADYYRMKAKSNRLTPQDDERIRSFYLHGA
REGGKEGKDEQQKVVKIKINEEEQVKEDGSRVKESLYLTLNYDSKKAVLS
RKVSRAKEGGKVGGVGGVGGEGGGGMVSS*
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mRNA from alignment at chr19:448697..450286+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01470.1 ID=NO19G01470.1|Name=NO19G01470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1590bp|location=Sequence derived from alignment at chr19:448697..450286+ (Nannochloropsis oceanica)
ATGTCATCTCTCCTGGAGCCCAAGCTACTCCTCCACAGGAAGCTAAGCAG
CACCTGGTCAAGCGCTGAACTAGCAGCTTACCTGGAAAGCAAACCCTCCT
TCCTCTCCGACATCTCCAATGTCTTCCGCACCCTTGATCACGCCATTAAG
CTACGCGTCCTTCTCGCCTTCCGTGCATTAGACTCCGAAGAAATCGCGGC
ATTACCCCAAGAAATGCTGCTGTCCGTGTTGGACGAGGCGGGCGGCGACC
AGGATGAGTGGGTTAAGGTCTGTGCATGCATGGTCCGCGACGCCCTCTTT
GGCAGCAGCACAGGTATGACAGGGCCTGGTTCCCGCCCTCCCGCAGCGGA
AGTGACGATGGACGTCTTCAACAAATGTGGGGTGCTTGCAGAGGGGATAG
ACGACGAAAAGGAGGAGGAGGCAAATGAAGCAATAGCAGCAGCAGCAGCA
GCAGCCGTGGCAGGAGGGTCACCTGCCGCACGCGCTCGCCGCCGCCGCTG
TCGCGTTGAACCAGAACCTTATTTCTGTCCCATTGAATATCTCTATCTCT
CCGAAGCCCTCATCCAGCGCCATCACCGTCAAGCCCCTCTGACCCGGAAG
CAAAACGCCCACTTCGTCGTTGGCGACTTGAAAGACGTCGAAATGGAACC
CATCCCCGACTCCAGCCTCATGCCCTCTCCCTCCCTCCCTTCCTCCCTCC
CTTCCTCCCTCCCGGCCCCCCACTCCTCCTCCTCCTCATCCTCATCCTCT
TCCTCCCTTCTCAAAGCTGAGCTAAAACAACCGCCCCCTCCATCACCACG
TCCCAACTTGCTCCCACGCCGTCCCTCCTCCTCCTCGTCCTCCTCATCTT
TCAGCGCCCCTTCCTCCCTTCTCTCCCAACACCACCACCAGAATACCAAA
AAAGATAAACCCCGCCTTAAAATTATTAAGCTCGACGAGATAAAAACAGG
GGGAGGCAACCAAGCCAAAATCGCAGCCCGAAACGAGGCAGTATCTCAAG
AATTTGGCAGCACCCAACCCCTCCGTTTCCCCATCCCTAAAAAAACGCAT
CAACAACAACAGCAACGGACGCCGCCATCACCACCACCTCCTCCTCCCCC
TTCTTCTTCTTCCTCCTCTTCTCCATCTTCTTCCTTGGCTGAATCCCAGG
AACTTCGCAAACGCAACGCCGCCGAGGCCCTCGCTGGTCTCCTCTCCCCC
CCTCCCTCGTCCCTCCCCCCGGCTGGTGCTGCTGGTGCTGCTGCTCCTAT
TACAGATGCCCTTGCTGATTACTATCGCATGAAGGCCAAAAGCAACCGAT
TGACTCCCCAAGATGACGAGCGCATCCGCAGTTTCTATTTGCATGGGGCA
AGGGAGGGAGGGAAGGAGGGCAAGGATGAGCAACAGAAGGTGGTGAAGAT
CAAAATTAACGAGGAGGAACAGGTGAAGGAGGATGGGAGTAGAGTGAAGG
AAAGTTTGTATCTGACGCTGAATTACGACAGTAAGAAGGCTGTGTTGTCG
AGAAAGGTGTCGAGGGCCAAGGAGGGAGGGAAGGTGGGAGGAGTAGGAGG
AGTAGGAGGAGAAGGAGGAGGTGGGATGGTGTCTTCGTAG
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Coding sequence (CDS) from alignment at chr19:448697..450286+

>NO19G01470.1 ID=NO19G01470.1|Name=NO19G01470.1|organism=Nannochloropsis oceanica|type=CDS|length=1590bp|location=Sequence derived from alignment at chr19:448697..450286+ (Nannochloropsis oceanica)
ATGTCATCTCTCCTGGAGCCCAAGCTACTCCTCCACAGGAAGCTAAGCAG
CACCTGGTCAAGCGCTGAACTAGCAGCTTACCTGGAAAGCAAACCCTCCT
TCCTCTCCGACATCTCCAATGTCTTCCGCACCCTTGATCACGCCATTAAG
CTACGCGTCCTTCTCGCCTTCCGTGCATTAGACTCCGAAGAAATCGCGGC
ATTACCCCAAGAAATGCTGCTGTCCGTGTTGGACGAGGCGGGCGGCGACC
AGGATGAGTGGGTTAAGGTCTGTGCATGCATGGTCCGCGACGCCCTCTTT
GGCAGCAGCACAGGTATGACAGGGCCTGGTTCCCGCCCTCCCGCAGCGGA
AGTGACGATGGACGTCTTCAACAAATGTGGGGTGCTTGCAGAGGGGATAG
ACGACGAAAAGGAGGAGGAGGCAAATGAAGCAATAGCAGCAGCAGCAGCA
GCAGCCGTGGCAGGAGGGTCACCTGCCGCACGCGCTCGCCGCCGCCGCTG
TCGCGTTGAACCAGAACCTTATTTCTGTCCCATTGAATATCTCTATCTCT
CCGAAGCCCTCATCCAGCGCCATCACCGTCAAGCCCCTCTGACCCGGAAG
CAAAACGCCCACTTCGTCGTTGGCGACTTGAAAGACGTCGAAATGGAACC
CATCCCCGACTCCAGCCTCATGCCCTCTCCCTCCCTCCCTTCCTCCCTCC
CTTCCTCCCTCCCGGCCCCCCACTCCTCCTCCTCCTCATCCTCATCCTCT
TCCTCCCTTCTCAAAGCTGAGCTAAAACAACCGCCCCCTCCATCACCACG
TCCCAACTTGCTCCCACGCCGTCCCTCCTCCTCCTCGTCCTCCTCATCTT
TCAGCGCCCCTTCCTCCCTTCTCTCCCAACACCACCACCAGAATACCAAA
AAAGATAAACCCCGCCTTAAAATTATTAAGCTCGACGAGATAAAAACAGG
GGGAGGCAACCAAGCCAAAATCGCAGCCCGAAACGAGGCAGTATCTCAAG
AATTTGGCAGCACCCAACCCCTCCGTTTCCCCATCCCTAAAAAAACGCAT
CAACAACAACAGCAACGGACGCCGCCATCACCACCACCTCCTCCTCCCCC
TTCTTCTTCTTCCTCCTCTTCTCCATCTTCTTCCTTGGCTGAATCCCAGG
AACTTCGCAAACGCAACGCCGCCGAGGCCCTCGCTGGTCTCCTCTCCCCC
CCTCCCTCGTCCCTCCCCCCGGCTGGTGCTGCTGGTGCTGCTGCTCCTAT
TACAGATGCCCTTGCTGATTACTATCGCATGAAGGCCAAAAGCAACCGAT
TGACTCCCCAAGATGACGAGCGCATCCGCAGTTTCTATTTGCATGGGGCA
AGGGAGGGAGGGAAGGAGGGCAAGGATGAGCAACAGAAGGTGGTGAAGAT
CAAAATTAACGAGGAGGAACAGGTGAAGGAGGATGGGAGTAGAGTGAAGG
AAAGTTTGTATCTGACGCTGAATTACGACAGTAAGAAGGCTGTGTTGTCG
AGAAAGGTGTCGAGGGCCAAGGAGGGAGGGAAGGTGGGAGGAGTAGGAGG
AGTAGGAGGAGAAGGAGGAGGTGGGATGGTGTCTTCGTAG
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Synonyms
Publications