NO19G01470, NO19G01470 (gene) Nannochloropsis oceanica

Overview
NameNO19G01470
Unique NameNO19G01470
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1590
Alignment locationchr19:448697..450286 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:448697..450286 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO19G01470 vs. NCBI_GenBank
Match: EWM23639.1 (hypothetical protein Naga_100165g1 [Nannochloropsis gaditana])

HSP 1 Score: 263.8 bits (673), Expect = 1.100e-66
Identity = 190/347 (54.76%), Postives = 225/347 (64.84%), Query Frame = 0 
Query:    1 MSSLLEPKLLLHRKLSSTWSSAELAAYLESKPSFLSDISNVFRTLDHAIKLRVLLAFRALDSEEIAALPQEMLLSVLDEAGGDQDEWVKVCACMVRDALFGSSTGMTGPGSRPPAAEVTMDVFNKCGVLAEGIDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEPEPYFCPIEYLYLSEALIQRHHRQAPLTRKQNAHFVVGDLKDVEMEPIPDSSLMPSPSLPSXXXXXXXXPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKPRLKIIKLDEIKTGGGNQAKIAARNEAVSQEFGSTQPLRFPIPK 348
            MSS LEPK LL+R L+STWSSA+ AA+L+SKP+FLS++ NVF TLD +IKLRVLLAFRALD  + A LP+++LL++LD+A GD DEWV VCA +VR+ L  ++  +TG  SR P AEV  DV  K G++     +                                 V PEPYFCP EYLYLSEALIQR HR APLTRKQNAHFV+GDL++VEMEP+PD+ LMPSP+  S      XX  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                              DKPRLK++KLDE+K+ G   A+ AARNEAVS EFGS QPLR   PK
Sbjct:    1 MSSTLEPKFLLNRLLASTWSSADFAAFLKSKPAFLSEVLNVFSTLDQSIKLRVLLAFRALDKADAAKLPKDLLLAILDQAAGDGDEWVNVCASLVREVLVDATANVTGSNSRLPTAEVIADVLKKSGLVTAAPGE----EESPVEKPAEATGTVEPKVADSSPKAARQVTPEPYFCPKEYLYLSEALIQRCHRSAPLTRKQNAHFVLGDLREVEMEPVPDTGLMPSPAPFSLPPSFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKLTVPAGARTSVPTSSLLSRAALSQQRRTDKPRLKLLKLDEVKS-GAKPARTAARNEAVSHEFGS-QPLRPQAPK 341
The following BLAST results are available for this feature:
BLAST of NO19G01470 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23639.11.100e-6654.76hypothetical protein Naga_100165g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL013nonsL013Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR037ngnoR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01470.1NO19G01470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01470.1NO19G01470.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01470 ID=NO19G01470|Name=NO19G01470|organism=Nannochloropsis oceanica|type=gene|length=1590bp
ATGTCATCTCTCCTGGAGCCCAAGCTACTCCTCCACAGGAAGCTAAGCAG
CACCTGGTCAAGCGCTGAACTAGCAGCTTACCTGGAAAGCAAACCCTCCT
TCCTCTCCGACATCTCCAATGTCTTCCGCACCCTTGATCACGCCATTAAG
CTACGCGTCCTTCTCGCCTTCCGTGCATTAGACTCCGAAGAAATCGCGGC
ATTACCCCAAGAAATGCTGCTGTCCGTGTTGGACGAGGCGGGCGGCGACC
AGGATGAGTGGGTTAAGGTCTGTGCATGCATGGTCCGCGACGCCCTCTTT
GGCAGCAGCACAGGTATGACAGGGCCTGGTTCCCGCCCTCCCGCAGCGGA
AGTGACGATGGACGTCTTCAACAAATGTGGGGTGCTTGCAGAGGGGATAG
ACGACGAAAAGGAGGAGGAGGCAAATGAAGCAATAGCAGCAGCAGCAGCA
GCAGCCGTGGCAGGAGGGTCACCTGCCGCACGCGCTCGCCGCCGCCGCTG
TCGCGTTGAACCAGAACCTTATTTCTGTCCCATTGAATATCTCTATCTCT
CCGAAGCCCTCATCCAGCGCCATCACCGTCAAGCCCCTCTGACCCGGAAG
CAAAACGCCCACTTCGTCGTTGGCGACTTGAAAGACGTCGAAATGGAACC
CATCCCCGACTCCAGCCTCATGCCCTCTCCCTCCCTCCCTTCCTCCCTCC
CTTCCTCCCTCCCGGCCCCCCACTCCTCCTCCTCCTCATCCTCATCCTCT
TCCTCCCTTCTCAAAGCTGAGCTAAAACAACCGCCCCCTCCATCACCACG
TCCCAACTTGCTCCCACGCCGTCCCTCCTCCTCCTCGTCCTCCTCATCTT
TCAGCGCCCCTTCCTCCCTTCTCTCCCAACACCACCACCAGAATACCAAA
AAAGATAAACCCCGCCTTAAAATTATTAAGCTCGACGAGATAAAAACAGG
GGGAGGCAACCAAGCCAAAATCGCAGCCCGAAACGAGGCAGTATCTCAAG
AATTTGGCAGCACCCAACCCCTCCGTTTCCCCATCCCTAAAAAAACGCAT
CAACAACAACAGCAACGGACGCCGCCATCACCACCACCTCCTCCTCCCCC
TTCTTCTTCTTCCTCCTCTTCTCCATCTTCTTCCTTGGCTGAATCCCAGG
AACTTCGCAAACGCAACGCCGCCGAGGCCCTCGCTGGTCTCCTCTCCCCC
CCTCCCTCGTCCCTCCCCCCGGCTGGTGCTGCTGGTGCTGCTGCTCCTAT
TACAGATGCCCTTGCTGATTACTATCGCATGAAGGCCAAAAGCAACCGAT
TGACTCCCCAAGATGACGAGCGCATCCGCAGTTTCTATTTGCATGGGGCA
AGGGAGGGAGGGAAGGAGGGCAAGGATGAGCAACAGAAGGTGGTGAAGAT
CAAAATTAACGAGGAGGAACAGGTGAAGGAGGATGGGAGTAGAGTGAAGG
AAAGTTTGTATCTGACGCTGAATTACGACAGTAAGAAGGCTGTGTTGTCG
AGAAAGGTGTCGAGGGCCAAGGAGGGAGGGAAGGTGGGAGGAGTAGGAGG
AGTAGGAGGAGAAGGAGGAGGTGGGATGGTGTCTTCGTAG
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protein sequence of NO19G01470.1

>NO19G01470.1-protein ID=NO19G01470.1-protein|Name=NO19G01470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=530bp
MSSLLEPKLLLHRKLSSTWSSAELAAYLESKPSFLSDISNVFRTLDHAIK
LRVLLAFRALDSEEIAALPQEMLLSVLDEAGGDQDEWVKVCACMVRDALF
GSSTGMTGPGSRPPAAEVTMDVFNKCGVLAEGIDDEKEEEANEAIAAAAA
AAVAGGSPAARARRRRCRVEPEPYFCPIEYLYLSEALIQRHHRQAPLTRK
QNAHFVVGDLKDVEMEPIPDSSLMPSPSLPSSLPSSLPAPHSSSSSSSSS
SSLLKAELKQPPPPSPRPNLLPRRPSSSSSSSSFSAPSSLLSQHHHQNTK
KDKPRLKIIKLDEIKTGGGNQAKIAARNEAVSQEFGSTQPLRFPIPKKTH
QQQQQRTPPSPPPPPPPSSSSSSSPSSSLAESQELRKRNAAEALAGLLSP
PPSSLPPAGAAGAAAPITDALADYYRMKAKSNRLTPQDDERIRSFYLHGA
REGGKEGKDEQQKVVKIKINEEEQVKEDGSRVKESLYLTLNYDSKKAVLS
RKVSRAKEGGKVGGVGGVGGEGGGGMVSS*
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Synonyms
Publications