NO19G01270.1, NO19G01270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01270.1
Unique NameNO19G01270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1844
Alignment locationchr19:402460..404991 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:402460..404991 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G01270.1 vs.
Match: EWM23653.1 (peptidase s41 [Nannochloropsis gaditana])

HSP 1 Score: 369.4 bits (947), Expect = 1.500e-98
Identity = 234/391 (59.85%), Postives = 259/391 (66.24%), Query Frame = 0 
Query:    1 MPRLQHAHALLLLLVATTCVSLHPAAAA---LRPATKIWASSSRAAYVSPRPPSCLLASTRAAVQRRREQQQQQQQQQQQQQLGDGTLTLATAPVILLRKLSPLLLGFLPMLAPSSPYGQASSVANAATFTSTFFEPSTTMSAVAFDDAMEKAKAGEEEVMGMVEVGEEK--DG---LRLMGKVEPIDKLGKEAEGIFKRARIAESDNEFEKALRLYDRVTRIAPGYAYAWSNKGNAYIALGDLEKGLDSYNRAIELLPSKAGDAWLVYLNKATTELALDRIDAAITDLDLARVLHGQPDMLLFANKGLALERKGKFGPALENYEFAVMSKPKDVQPWWLRYSLVLFQEQQDIKSMEVMRKVSGKFGRVEEIKVALATIVYAYGDKNEAER 384
            MPR        LLL     V    AA A   +RP T++ A S R     P   SC   ST     RRR+Q+      +              AP     K SPLL GFLP+LAP+           AA+FT T     +   AV+F     K          MV   +E   DG    RLMG+VEPID+LG+EAEGIFKRARIAE+DNEFEKALRLYDRVTR+APGYAYAWSNKGNAYIALGDLEKGLDSY+RA+ELLPSK GDAWLVYLNKATTELALDR+DAAI DLDLARVL GQPDMLLFANKGLALERKG    ALENYEFAV++KPKDVQPWWLRYS+VLFQEQQDIK+MEVMRKV GKFGRVEE KVALA+     G     ER
Sbjct:    1 MPRSYRPAIFWLLLAVALPVCPSTAAFAWHSIRPPTELTADSPRY----PSSISCSRGSTHRFADRRRDQRINSDLMKSSPS--------KAAPSAFC-KFSPLLFGFLPVLAPA-----------AASFTPTPAHAVSAPVAVSFSIISTKGPTALVAATDMVLKEDEMKADGEEVQRLMGRVEPIDRLGQEAEGIFKRARIAEADNEFEKALRLYDRVTRVAPGYAYAWSNKGNAYIALGDLEKGLDSYSRAVELLPSKTGDAWLVYLNKATTELALDRLDAAIQDLDLARVLRGQPDMLLFANKGLALERKGDLAQALENYEFAVLTKPKDVQPWWLRYSMVLFQEQQDIKAMEVMRKVVGKFGRVEETKVALASKCLGVGWGRGRER 367
The following BLAST results are available for this feature:
BLAST of NO19G01270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23653.11.500e-9859.85peptidase s41 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01270NO19G01270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01270.1NO19G01270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01270.1.cds1NO19G01270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01270.1.cds2NO19G01270.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01270.1.cds3NO19G01270.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01270.1.cds4NO19G01270.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01270.1.cds5NO19G01270.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01270.1 ID=NO19G01270.1|Name=NO19G01270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1844bp
TCTCCCTGTGGGTCTATGTGGACTAGGAGGGGAAGGGGGGTATGGAGGGT
GGGGGGTCAGTAGTGCCATGGGCAAGACGGGTTGGTTGATCTACGCCAAT
GGCCTTGGCAGCAGATAGAAGGGACATTCATGGCATAGTGCACTCGATGA
ATGGGAGGATTTGGAGGGCATGGACTTAAAGGTATGGCCGCCGCAGGAAG
CGATAATAGTGAGGGGGCTACCCCTTGGATGAGAAGGGAGTCGGAGTGGA
GGCTATGTACCATATGCAATTACGGGTGGCGTGTAACTGCCTAACCTTCT
CCCCCTCGTCTCGACCCCTCTCTAAACTCACTACAGCTATCTGTCCTGTT
GCGTAATGTGTTGGATGCAGGCCCGGTGTGAGAGTCGACTTTTGTTCCAT
GAGCACGATCGCCGGAGGACGAGCATTCGCAAATTGAGGCTCAGAGCCCA
CAAAAGCTGACCCACACAACACCCCATCCATTCACAGGTCACCATGCCGC
GTCTTCAGCACGCCCATGCCCTGTTGCTTCTTCTAGTCGCTACGACTTGT
GTCTCTCTCCATCCTGCCGCCGCTGCTCTCCGACCTGCCACCAAGATTTG
GGCCTCCTCCTCCCGCGCGGCCTACGTCTCCCCTCGCCCACCCTCCTGCC
TCCTCGCCAGCACCCGTGCCGCTGTACAGCGCAGAAGAGAACAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTTGGTGACGGCACCTTGAC
CCTCGCGACAGCACCCGTGATCTTACTCCGGAAACTGTCTCCACTTCTTC
TTGGTTTCCTTCCCATGCTTGCCCCATCATCGCCTTACGGGCAGGCCTCG
TCAGTAGCTAATGCGGCCACTTTTACCTCCACTTTTTTTGAGCCATCAAC
AACGATGTCGGCTGTTGCCTTTGACGACGCGATGGAAAAGGCGAAGGCAG
GAGAGGAGGAGGTGATGGGCATGGTAGAAGTAGGAGAGGAGAAAGACGGG
CTCCGCCTGATGGGGAAGGTGGAACCAATTGATAAGCTGGGAAAGGAGGC
AGAGGGTATCTTCAAGCGTGCCCGTATTGCGGAATCGGATAACGAATTCG
AGAAAGCTTTGAGGCTGTACGATCGAGTCACGCGCATCGCACCGGGTTAT
GCGTATGCGTGGAGCAACAAGGGCAATGCGTACATCGCCTTGGGAGATCT
CGAAAAGGGTCTAGACTCATATAACCGGGCCATCGAGCTCCTACCGTCCA
AGGCCGGGGACGCTTGGCTGGTGTACCTTAACAAAGCCACCACGGAACTC
GCCCTCGACCGAATAGACGCCGCCATCACCGACTTGGACCTTGCGAGAGT
TCTGCACGGACAGCCGGATATGCTGCTTTTCGCCAACAAGGGCCTGGCGT
TGGAGAGGAAAGGGAAGTTTGGACCGGCCCTTGAGAACTATGAATTTGCT
GTCATGAGCAAGCCCAAGGACGTGCAGCCGTGGTGGTTGAGGTACTCCCT
CGTCCTGTTCCAGGAGCAACAAGACATCAAGTCTATGGAGGTCATGCGAA
AAGTGTCGGGGAAATTTGGGCGTGTGGAAGAAATCAAGGTGGCCCTCGCG
ACGATCGTCTACGCCTATGGAGACAAGAACGAAGCTGAACGAATGTGGAG
CGAACTGAACGGCCAGGCCCAGTATAAGTACAGGGACGAGGATTTTCTTA
GAAACAAATTAAGGTGGCCCCAGAGGATGATTGACACACTCAGAGAGTTC
AAGGGGCTTTATACATCGAGGGTCTAGGAAGGGAGGGAGGGGGGAAGGAG
GGAGGGTAGGAGGGGATAGGGAAGAAGAAGCAGGCAATCATCGT
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protein sequence of NO19G01270.1

>NO19G01270.1-protein ID=NO19G01270.1-protein|Name=NO19G01270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=428bp
MPRLQHAHALLLLLVATTCVSLHPAAAALRPATKIWASSSRAAYVSPRPP
SCLLASTRAAVQRRREQQQQQQQQQQQQQLGDGTLTLATAPVILLRKLSP
LLLGFLPMLAPSSPYGQASSVANAATFTSTFFEPSTTMSAVAFDDAMEKA
KAGEEEVMGMVEVGEEKDGLRLMGKVEPIDKLGKEAEGIFKRARIAESDN
EFEKALRLYDRVTRIAPGYAYAWSNKGNAYIALGDLEKGLDSYNRAIELL
PSKAGDAWLVYLNKATTELALDRIDAAITDLDLARVLHGQPDMLLFANKG
LALERKGKFGPALENYEFAVMSKPKDVQPWWLRYSLVLFQEQQDIKSMEV
MRKVSGKFGRVEEIKVALATIVYAYGDKNEAERMWSELNGQAQYKYRDED
FLRNKLRWPQRMIDTLREFKGLYTSRV*
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mRNA from alignment at chr19:402460..404991+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01270.1 ID=NO19G01270.1|Name=NO19G01270.1|organism=Nannochloropsis oceanica|type=mRNA|length=2532bp|location=Sequence derived from alignment at chr19:402460..404991+ (Nannochloropsis oceanica)
TCTCCCTGTGGGTCTATGTGGACTAGGAGGGGAAGGGGGGTATGGAGGGT
GGGGGGTCAGTAGTGCCATGGGCAAGACGGGTTGGTTGATCTACGCCAAT
GGCCTTGGCAGCAGATAGAAGGGACATTCATGGCATAGTGCACTCGATGA
ATGGGAGGATTTGGAGGGCATGGACTTAAAGGTATGGCCGCCGCAGGAAG
CGATAATAGTGAGGGGGCTACCCCTTGGATGAGAAGGGAGTCGGAGTGGA
GGCTATGTACCATATGCAATTACGGGTGGCGTGTAACTGCCTAACCTTCT
CCCCCTCGTCTCGACCCCTCTCTAAACTCACTACAGCTATCTGTCCTGTT
GCGTAATGTGTTGGATGCAGGCCCGGTGTGAGAGTCGACTTTTGTTCCAT
GAGCACGATCGCCGGAGGACGAGCATTCGCAAATTGAGGCTCAGAGCCCA
CAAAAGCTGACCCACACAACACCCCATCCATTCACAGGTCACCATGCCGC
GTCTTCAGCACGCCCATGCCCTGTTGCTTCTTCTAGTCGCTACGACTTGT
GTCTCTCTCCATCCTGCCGCCGCTGCTCTCCGACCTGCCACCAAGATTTG
GGCCTCCTCCTCCCGCGCGGCCTACGTCTCCCCTCGCCCACCCTCCTGCC
TCCTCGCCAGCACCCGTGCCGCTGTACAGCGCAGAAGAGAACAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTTGGTGACGGCACCTTGAC
CCTCGCGACAGCACCCGTGATCTTACTCCGGAAACTGTCTCCACTTCTTC
TTGGTTTCCTTCCCATGCTTGCCCCATCATCGCCTTACGGGCAGGCCTCG
TCAGTAGCTAATGCGGCCACTTTTACCTCCACTTTTTTTGAGCCATCAAC
AACGATGTCGGCTGTTGCCTTTGACGACGCGATGGAAAAGGCGAAGGCAG
GAGAGGAGGAGGTGATGGGCATGGTAGAAGTAGGAGAGGAGAAAGACGGG
CTCCGCCTGATGGGGAAGGTGGAACCAATTGATAAGCTGGGAAAGGAGGC
AGAGGGTATCTTCAAGGTGCGTAGGTTGGAAGAGAAAGGGAGGGACGAAA
ATATTTGAGAGTACAAGGTGGATATGCTGCCTTTTTAAACCTCTTTTTCC
ATCCTCTCCTCCACCCACAACATGCACACTCACACACTCAGCGTGCCCGT
ATTGCGGAATCGGATAACGAATTCGAGAAAGCTTTGAGGCTGTACGATCG
AGTCACGCGCATCGCACCGGGTTATGCGTATGCGTGGAGCAACAAGGGCA
ATGCGTACATCGCCTTGGGAGATCTCGAAAAGGTAAGAGAGGAGGGAAGG
AGGGAAAGGAGGGAAGGAGGACAGGTGCACGAGCTCCCAATATGTTTTAC
TGCGACATCAGGCGCAATCAATCAATATCTTTTCCTTTCCTTTTTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCACAGGGTCTAGACTCATATAACCG
GGCCATCGAGCTCCTACCGTCCAAGGCCGGGGACGCTTGGCTGGTGTACC
TTAACAAAGCCACCACGGAACTCGCCCTCGACCGAATAGACGCCGCCATC
ACCGACTTGGACCTTGCGAGAGTTCTGCACGGACAGCCGGATATGCTGCT
TTTCGCCAACAAGGGCCTGGCGTTGGAGAGGAAAGGGAAGTTTGGACCGG
CCCTTGAGAACTATGAATTTGCTGTCATGAGCAAGCCCAAGGACGTGCAG
CCGTGGTGGTTGAGGTGCGTACATACGCCCCACCCTTCCCTCTCTCCCTC
TTTGCCTCCCCCCCTCCTTCAGGTACTCCCTCGTCCTTTTTCAGGAGCAA
CAAAACATCAAGTCTATGGAGGGTGATGCGAAAACTGACGTCTCCTTCCC
TCCCTCCTTCCCTCCTCCCTCCCTCCTTCAGGTACTCCCTCGTCCTGTTC
CAGGAGCAACAAGACATCAAGTCTATGGAGGTCATGCGAAAAGTGTCGGG
GAAATTTGGGCGTGTGGAAGAAATCAAGGTGGCCCTCGCGAGTAAGTAGG
TGGAGACGAGGGAGGGAGGGAGGAAGGGAGGGAGGAAGGGACAGGTGTGA
CTGAGGAAGGTATGAGTCATCCCACGGGGGAGATAGAAAAATATAAAAAG
GCAGAGGGCATTTGGAAGGAGGGCAGGGGGGAAGGTAGGGAGGGAGGAAG
GGCGAGATATCTCCCCACATGTTCACACTCTTATTGCCTTCCTCTTACTA
TCCTCTCCTCCCTCCTTCTCTCGCTCCCTCCCTCCTTAGCGATCGTCTAC
GCCTATGGAGACAAGAACGAAGCTGAACGAATGTGGAGCGAACTGAACGG
CCAGGCCCAGTATAAGTACAGGGACGAGGATTTTCTTAGAAACAAATTAA
GGTGGCCCCAGAGGATGATTGACACACTCAGAGAGTTCAAGGGGCTTTAT
ACATCGAGGGTCTAGGAAGGGAGGGAGGGGGGAAGGAGGGAGGGTAGGAG
GGGATAGGGAAGAAGAAGCAGGCAATCATCGT
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Coding sequence (CDS) from alignment at chr19:402460..404991+

>NO19G01270.1 ID=NO19G01270.1|Name=NO19G01270.1|organism=Nannochloropsis oceanica|type=CDS|length=1284bp|location=Sequence derived from alignment at chr19:402460..404991+ (Nannochloropsis oceanica)
ATGCCGCGTCTTCAGCACGCCCATGCCCTGTTGCTTCTTCTAGTCGCTAC
GACTTGTGTCTCTCTCCATCCTGCCGCCGCTGCTCTCCGACCTGCCACCA
AGATTTGGGCCTCCTCCTCCCGCGCGGCCTACGTCTCCCCTCGCCCACCC
TCCTGCCTCCTCGCCAGCACCCGTGCCGCTGTACAGCGCAGAAGAGAACA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTTGGTGACGGCA
CCTTGACCCTCGCGACAGCACCCGTGATCTTACTCCGGAAACTGTCTCCA
CTTCTTCTTGGTTTCCTTCCCATGCTTGCCCCATCATCGCCTTACGGGCA
GGCCTCGTCAGTAGCTAATGCGGCCACTTTTACCTCCACTTTTTTTGAGC
CATCAACAACGATGTCGGCTGTTGCCTTTGACGACGCGATGGAAAAGGCG
AAGGCAGGAGAGGAGGAGGTGATGGGCATGGTAGAAGTAGGAGAGGAGAA
AGACGGGCTCCGCCTGATGGGGAAGGTGGAACCAATTGATAAGCTGGGAA
AGGAGGCAGAGGGTATCTTCAAGCGTGCCCGTATTGCGGAATCGGATAAC
GAATTCGAGAAAGCTTTGAGGCTGTACGATCGAGTCACGCGCATCGCACC
GGGTTATGCGTATGCGTGGAGCAACAAGGGCAATGCGTACATCGCCTTGG
GAGATCTCGAAAAGGGTCTAGACTCATATAACCGGGCCATCGAGCTCCTA
CCGTCCAAGGCCGGGGACGCTTGGCTGGTGTACCTTAACAAAGCCACCAC
GGAACTCGCCCTCGACCGAATAGACGCCGCCATCACCGACTTGGACCTTG
CGAGAGTTCTGCACGGACAGCCGGATATGCTGCTTTTCGCCAACAAGGGC
CTGGCGTTGGAGAGGAAAGGGAAGTTTGGACCGGCCCTTGAGAACTATGA
ATTTGCTGTCATGAGCAAGCCCAAGGACGTGCAGCCGTGGTGGTTGAGGT
ACTCCCTCGTCCTGTTCCAGGAGCAACAAGACATCAAGTCTATGGAGGTC
ATGCGAAAAGTGTCGGGGAAATTTGGGCGTGTGGAAGAAATCAAGGTGGC
CCTCGCGACGATCGTCTACGCCTATGGAGACAAGAACGAAGCTGAACGAA
TGTGGAGCGAACTGAACGGCCAGGCCCAGTATAAGTACAGGGACGAGGAT
TTTCTTAGAAACAAATTAAGGTGGCCCCAGAGGATGATTGACACACTCAG
AGAGTTCAAGGGGCTTTATACATCGAGGGTCTAG
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Synonyms
Publications