NO19G01150.1, NO19G01150.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01150.1
Unique NameNO19G01150.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2226
Alignment locationchr19:377775..380284 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:377775..380284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G01150.1 vs.
Match: XP_005853438.1 (hypothetical protein NGA_0427100 [Nannochloropsis gaditana CCMP526]; EKU22919.1 hypothetical protein NGA_0427100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 218.0 bits (554), Expect = 6.200e-53
Identity = 193/458 (42.14%), Postives = 254/458 (55.46%), Query Frame = 0 
Query:   28 LLIFGFLVLFTPGAAAVKVWGLPFANPLHWLRPGSSGTRNLQAAVRALEGELSRLRSLHSAHLEELRKLRLKRAEDHALFRQQKREQDEKLLKIQKEAAEALALAKEKEAGVEEELENERKRWRIEAQEAIGKAVRVAVEQEGRKRKEEVGKLESLLAART---RDDEEGKEIEE-----MEEMFEKERKVFKKRLAAEREVAEEALEREEKLQQVVSALEDDNQILKNEVGKLTMKINSSSSVPPTTAAAAAPAPAAVVPVKEEEENKGEEVVAPAAVLASPAATTEPVKTTQAVMPPTSPPVAGTLKVTTPSSGSISGGYSDKSCISSSSSSSSSSSSITTTKTPAVAAPVKKLKKKVSSKSAGGR----VGSGAAGAARAGAGVSRGSGTISPPPVVKNIVPKRTVTMKKKEAAASNSSASSPSPLSSSS-----KASRPRHQPVAPSIKKGGLG 469
            LL+F  + L  P   A K+W LP  NPL WLRPG   TR+LQA VRALE ELSRLR+LH+AHL+ELR+LR KRAED A FR+  ++Q  +  ++++ A +ALA A+EKE  +EEELE ERKRWR EA+ AIG+AVR AVE+E RK KE VG+LES LAA      ++EE +E E+     ++E FEKER+ FKKRL AERE+ E  L REEKLQQV+  LE  N  LK EVG+LT                        VP++  ++   +   A  +   +P+AT+ PV       PP SP  AG +K         S     + C S+S+  +S SS++     P+          K  S  +G R    +G   A   +A      G+G +   P             KKK+A  S  S+SS S L +SS      A+RP  QPV P++KKGGLG
Sbjct:   18 LLLFPLINLVAPTHGA-KLWKLPLTNPLQWLRPGGD-TRHLQATVRALESELSRLRTLHTAHLDELRRLRAKRAEDFARFREAGKQQAAENERVREAAVQALARAQEKEDRIEEELERERKRWRTEAETAIGQAVREAVEEERRKGKEVVGRLESALAAARAAGANEEEEREKEDEGLRALQEAFEKERRQFKKRLGAERELVEVTLAREEKLQQVILKLEASNHALKAEVGQLT---------------EGKEGKEVKVPIESRDQVLTDRPAATVSETRAPSATSPPVPA-----PPQSPVTAGRIKT--------SNTKMVEECGSASAPPASVSSTVADPSLPSPNTSSSHSSSKSKSSPSGARKLKNIGKPKASVRKATTKPGLGAGKMETAPA------------KKKKATTSRPSSSSASSLPASSGSGRASAARPGRQPVTPTLKKGGLG 433
The following BLAST results are available for this feature:
BLAST of NO19G01150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853438.16.200e-5342.14hypothetical protein NGA_0427100 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01150NO19G01150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01150.1NO19G01150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01150.1.cds1NO19G01150.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01150.1.cds2NO19G01150.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01150.1 ID=NO19G01150.1|Name=NO19G01150.1|organism=Nannochloropsis oceanica|type=mRNA|length=2226bp
TATTTCCTTTTATTTGGGCCTTTGTAATGCGTTGTTTGTGAGGTGGGTGG
GGAGGTTTTCCGTGTGTATCTGCGTCTGCCACTTGCTCTCTTGGACTGAT
GAACTCATCTAATGAAATATTCCCAGTTCCGGATGCAGGGGCAGGCACTG
CACGTGACCGAAAACTCAAAACTTACAGATCGTCGGTGGGCAGAGGAGGC
AAGGCCCCACGCTTGTTTTTCGATAAAACGCACATTGACCACAATCACGA
ACCACACCTCCCTCCCCCTCCCCCCATTCCTCCATGTTCCCGTACAGGTC
TCTGTCCTTTATTGGATCAGCAGCAGCGCAAGCAGCGGTGACAGCAACAG
GACAACTTTTTAGCGTCTTCCTTGCCTTGCCTTGCTCCCATCATTAAAGT
GGGCGACGGCGAGGAGCAACATCATTTAACGAGGACACACTCATATCACC
ATGCCTGCCTCAAGAAGACCAGTCAGCAGCAGCTACGAGAATCGGCCGCG
ACAAAGGCAGGGTTTGCTTGTAATGGCCCCTCTCCTCATCTTTGGTTTCC
TTGTCCTCTTCACCCCGGGCGCCGCGGCTGTCAAAGTGTGGGGCTTGCCT
TTTGCCAATCCTCTGCACTGGCTTCGTCCCGGCAGCAGCGGCACGCGAAA
CTTGCAAGCCGCCGTCCGCGCTCTCGAGGGCGAACTTTCTCGTCTCCGTT
CCCTTCATTCTGCCCATCTTGAGGAGTTGCGCAAGCTGCGCTTGAAACGC
GCTGAGGACCATGCCCTCTTTCGTCAACAGAAACGTGAACAAGATGAAAA
ACTTTTAAAAATTCAGAAGGAGGCAGCAGAGGCATTAGCATTAGCCAAGG
AGAAGGAAGCAGGGGTAGAGGAAGAGTTGGAGAATGAGAGGAAGAGATGG
AGGATTGAGGCACAGGAAGCGATCGGCAAGGCAGTGAGGGTAGCCGTGGA
GCAGGAAGGGAGGAAGCGGAAAGAGGAGGTAGGGAAATTGGAAAGTTTGT
TGGCGGCTAGGACGAGGGATGACGAGGAGGGGAAGGAGATTGAGGAGATG
GAGGAGATGTTCGAGAAGGAACGAAAGGTGTTCAAAAAGAGGCTGGCGGC
TGAGAGGGAGGTGGCAGAGGAGGCACTGGAGAGAGAGGAAAAGCTGCAGC
AGGTGGTTTCAGCTTTGGAGGATGATAATCAGATTTTAAAGAACGAGGTG
GGAAAATTGACCATGAAGATCAACAGCAGCAGTAGCGTGCCTCCCACAAC
AGCAGCAGCGGCAGCACCAGCACCAGCAGCTGTAGTACCGGTAAAAGAGG
AGGAGGAGAATAAGGGGGAAGAAGTTGTTGCACCAGCAGCAGTACTAGCA
TCACCAGCTGCGACCACGGAGCCAGTTAAGACGACACAGGCCGTCATGCC
CCCCACCTCTCCTCCTGTGGCAGGCACGCTGAAAGTCACCACTCCTTCCA
GCGGCAGCATCAGTGGTGGTTATAGCGACAAGAGTTGCATCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCATCACCACCACGAAGACGCCGGC
AGTGGCAGCGCCTGTCAAGAAGTTAAAAAAAAAAGTGTCAAGCAAATCAG
CAGGAGGGCGAGTCGGAAGTGGAGCAGCAGGAGCAGCAAGGGCAGGTGCA
GGAGTATCAAGAGGATCAGGCACGATTTCTCCACCACCTGTAGTAAAAAA
TATCGTTCCAAAAAGGACAGTTACCATGAAGAAGAAGGAGGCGGCGGCAA
GCAACTCGTCTGCCTCCTCCCCCTCCCCCCTTTCCTCCTCCTCTAAGGCA
TCTCGTCCAAGACACCAGCCAGTGGCGCCTTCGATTAAGAAGGGCGGTCT
GGGTACATCCAAATAGCACACACTAGCGTTGAATCATGGAAAGGAAAGAG
AATAATGGAGTGAAGGAAGAGAGAGTAGGTGAAACGCAAGCGAAGGACAT
TAGAATTACAGTCTTGAGAAGGAGAGAGGAGAAAATGAAGAGAAGAAAAA
ACTAACAGGAAGGAAACCACCCATATAAGGTCTTGGCATATCTTAAAACA
TGGACTACAACACGACACGCAAAACAGACCATTGGCAATGGGGATACAGG
CTTTTCGCCGGAGTATTACATCTAAGCGGTAGGCGAACGAGAATTCAAAG
TCGAAACTTGTAAAGGTATAGAAAGGAAAGACGGGGCAACCCCTCGAATA
TAAAGAAAAAAAATCTCTCTTGGACA
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protein sequence of NO19G01150.1

>NO19G01150.1-protein ID=NO19G01150.1-protein|Name=NO19G01150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=472bp
MPASRRPVSSSYENRPRQRQGLLVMAPLLIFGFLVLFTPGAAAVKVWGLP
FANPLHWLRPGSSGTRNLQAAVRALEGELSRLRSLHSAHLEELRKLRLKR
AEDHALFRQQKREQDEKLLKIQKEAAEALALAKEKEAGVEEELENERKRW
RIEAQEAIGKAVRVAVEQEGRKRKEEVGKLESLLAARTRDDEEGKEIEEM
EEMFEKERKVFKKRLAAEREVAEEALEREEKLQQVVSALEDDNQILKNEV
GKLTMKINSSSSVPPTTAAAAAPAPAAVVPVKEEEENKGEEVVAPAAVLA
SPAATTEPVKTTQAVMPPTSPPVAGTLKVTTPSSGSISGGYSDKSCISSS
SSSSSSSSSITTTKTPAVAAPVKKLKKKVSSKSAGGRVGSGAAGAARAGA
GVSRGSGTISPPPVVKNIVPKRTVTMKKKEAAASNSSASSPSPLSSSSKA
SRPRHQPVAPSIKKGGLGTSK*
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mRNA from alignment at chr19:377775..380284-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01150.1 ID=NO19G01150.1|Name=NO19G01150.1|organism=Nannochloropsis oceanica|type=mRNA|length=2510bp|location=Sequence derived from alignment at chr19:377775..380284- (Nannochloropsis oceanica)
TATTTCCTTTTATTTGGGCCTTTGTAATGCGTTGTTTGTGAGGTGGGTGG
GGAGGTTTTCCGTGTGTATCTGCGTCTGCCACTTGCTCTCTTGGACTGAT
GAACTCATCTAATGAAATATTCCCAGTTCCGGATGCAGGGGCAGGCACTG
CACGTGACCGAAAACTCAAAACTTACAGATCGTCGGTGGGCAGAGGAGGC
AAGGCCCCACGCTTGTTTTTCGATAAAACGCACATTGACCACAATCACGA
ACCACACCTCCCTCCCCCTCCCCCCATTCCTCCATGTTCCCGTACAGGTC
TCTGTCCTTTATTGGATCAGCAGCAGCGCAAGCAGCGGTGACAGCAACAG
GACAACTTTTTAGCGTCTTCCTTGCCTTGCCTTGCTCCCATCATTAAAGT
GGGCGACGGCGAGGAGCAACATCATTTAACGAGGACACACTCATATCACC
ATGCCTGCCTCAAGAAGACCAGTCAGCAGCAGCTACGAGAATCGGCCGCG
ACAAAGGCAGGGTTTGCTTGTAATGGCCCCTCTCCTCATCTTTGGTTTCC
TTGTCCTCTTCACCCCGGGCGCCGCGGCTGTCAAAGTGTGGGGCTTGCCT
TTTGCCAGTACGTAAACTGAGTGACAGGGAGGACTCATTGTGTCATGAAT
TTCCCATTATTTTTTCGTGTGTATTAAATTTACCATATATTTCTTAAGTT
TACTCTTAGCCTCCTGTTTTCTTCGCATGCTCCCTTTCTACGCTCTTCAC
TCTCCTGCACCACACCTCAGATCAACAGAGACTTACCAGCAAGTTTTCAA
TGAATTTCACGCGGTGAAAGCAAACAATTCTGTAATCAGCTTCAACCCTT
CCTCCCTCTCTCCCTCTCTCTCTCCCTCCCTCCCTCCACAGATCCTCTGC
ACTGGCTTCGTCCCGGCAGCAGCGGCACGCGAAACTTGCAAGCCGCCGTC
CGCGCTCTCGAGGGCGAACTTTCTCGTCTCCGTTCCCTTCATTCTGCCCA
TCTTGAGGAGTTGCGCAAGCTGCGCTTGAAACGCGCTGAGGACCATGCCC
TCTTTCGTCAACAGAAACGTGAACAAGATGAAAAACTTTTAAAAATTCAG
AAGGAGGCAGCAGAGGCATTAGCATTAGCCAAGGAGAAGGAAGCAGGGGT
AGAGGAAGAGTTGGAGAATGAGAGGAAGAGATGGAGGATTGAGGCACAGG
AAGCGATCGGCAAGGCAGTGAGGGTAGCCGTGGAGCAGGAAGGGAGGAAG
CGGAAAGAGGAGGTAGGGAAATTGGAAAGTTTGTTGGCGGCTAGGACGAG
GGATGACGAGGAGGGGAAGGAGATTGAGGAGATGGAGGAGATGTTCGAGA
AGGAACGAAAGGTGTTCAAAAAGAGGCTGGCGGCTGAGAGGGAGGTGGCA
GAGGAGGCACTGGAGAGAGAGGAAAAGCTGCAGCAGGTGGTTTCAGCTTT
GGAGGATGATAATCAGATTTTAAAGAACGAGGTGGGAAAATTGACCATGA
AGATCAACAGCAGCAGTAGCGTGCCTCCCACAACAGCAGCAGCGGCAGCA
CCAGCACCAGCAGCTGTAGTACCGGTAAAAGAGGAGGAGGAGAATAAGGG
GGAAGAAGTTGTTGCACCAGCAGCAGTACTAGCATCACCAGCTGCGACCA
CGGAGCCAGTTAAGACGACACAGGCCGTCATGCCCCCCACCTCTCCTCCT
GTGGCAGGCACGCTGAAAGTCACCACTCCTTCCAGCGGCAGCATCAGTGG
TGGTTATAGCGACAAGAGTTGCATCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCATCACCACCACGAAGACGCCGGCAGTGGCAGCGCCTGTC
AAGAAGTTAAAAAAAAAAGTGTCAAGCAAATCAGCAGGAGGGCGAGTCGG
AAGTGGAGCAGCAGGAGCAGCAAGGGCAGGTGCAGGAGTATCAAGAGGAT
CAGGCACGATTTCTCCACCACCTGTAGTAAAAAATATCGTTCCAAAAAGG
ACAGTTACCATGAAGAAGAAGGAGGCGGCGGCAAGCAACTCGTCTGCCTC
CTCCCCCTCCCCCCTTTCCTCCTCCTCTAAGGCATCTCGTCCAAGACACC
AGCCAGTGGCGCCTTCGATTAAGAAGGGCGGTCTGGGTACATCCAAATAG
CACACACTAGCGTTGAATCATGGAAAGGAAAGAGAATAATGGAGTGAAGG
AAGAGAGAGTAGGTGAAACGCAAGCGAAGGACATTAGAATTACAGTCTTG
AGAAGGAGAGAGGAGAAAATGAAGAGAAGAAAAAACTAACAGGAAGGAAA
CCACCCATATAAGGTCTTGGCATATCTTAAAACATGGACTACAACACGAC
ACGCAAAACAGACCATTGGCAATGGGGATACAGGCTTTTCGCCGGAGTAT
TACATCTAAGCGGTAGGCGAACGAGAATTCAAAGTCGAAACTTGTAAAGG
TATAGAAAGGAAAGACGGGGCAACCCCTCGAATATAAAGAAAAAAAATCT
CTCTTGGACA
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Coding sequence (CDS) from alignment at chr19:377775..380284-

>NO19G01150.1 ID=NO19G01150.1|Name=NO19G01150.1|organism=Nannochloropsis oceanica|type=CDS|length=1416bp|location=Sequence derived from alignment at chr19:377775..380284- (Nannochloropsis oceanica)
ATGCCTGCCTCAAGAAGACCAGTCAGCAGCAGCTACGAGAATCGGCCGCG
ACAAAGGCAGGGTTTGCTTGTAATGGCCCCTCTCCTCATCTTTGGTTTCC
TTGTCCTCTTCACCCCGGGCGCCGCGGCTGTCAAAGTGTGGGGCTTGCCT
TTTGCCAATCCTCTGCACTGGCTTCGTCCCGGCAGCAGCGGCACGCGAAA
CTTGCAAGCCGCCGTCCGCGCTCTCGAGGGCGAACTTTCTCGTCTCCGTT
CCCTTCATTCTGCCCATCTTGAGGAGTTGCGCAAGCTGCGCTTGAAACGC
GCTGAGGACCATGCCCTCTTTCGTCAACAGAAACGTGAACAAGATGAAAA
ACTTTTAAAAATTCAGAAGGAGGCAGCAGAGGCATTAGCATTAGCCAAGG
AGAAGGAAGCAGGGGTAGAGGAAGAGTTGGAGAATGAGAGGAAGAGATGG
AGGATTGAGGCACAGGAAGCGATCGGCAAGGCAGTGAGGGTAGCCGTGGA
GCAGGAAGGGAGGAAGCGGAAAGAGGAGGTAGGGAAATTGGAAAGTTTGT
TGGCGGCTAGGACGAGGGATGACGAGGAGGGGAAGGAGATTGAGGAGATG
GAGGAGATGTTCGAGAAGGAACGAAAGGTGTTCAAAAAGAGGCTGGCGGC
TGAGAGGGAGGTGGCAGAGGAGGCACTGGAGAGAGAGGAAAAGCTGCAGC
AGGTGGTTTCAGCTTTGGAGGATGATAATCAGATTTTAAAGAACGAGGTG
GGAAAATTGACCATGAAGATCAACAGCAGCAGTAGCGTGCCTCCCACAAC
AGCAGCAGCGGCAGCACCAGCACCAGCAGCTGTAGTACCGGTAAAAGAGG
AGGAGGAGAATAAGGGGGAAGAAGTTGTTGCACCAGCAGCAGTACTAGCA
TCACCAGCTGCGACCACGGAGCCAGTTAAGACGACACAGGCCGTCATGCC
CCCCACCTCTCCTCCTGTGGCAGGCACGCTGAAAGTCACCACTCCTTCCA
GCGGCAGCATCAGTGGTGGTTATAGCGACAAGAGTTGCATCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCATCACCACCACGAAGACGCCGGC
AGTGGCAGCGCCTGTCAAGAAGTTAAAAAAAAAAGTGTCAAGCAAATCAG
CAGGAGGGCGAGTCGGAAGTGGAGCAGCAGGAGCAGCAAGGGCAGGTGCA
GGAGTATCAAGAGGATCAGGCACGATTTCTCCACCACCTGTAGTAAAAAA
TATCGTTCCAAAAAGGACAGTTACCATGAAGAAGAAGGAGGCGGCGGCAA
GCAACTCGTCTGCCTCCTCCCCCTCCCCCCTTTCCTCCTCCTCTAAGGCA
TCTCGTCCAAGACACCAGCCAGTGGCGCCTTCGATTAAGAAGGGCGGTCT
GGGTACATCCAAATAG
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Synonyms
Publications