NO19G00870.1, NO19G00870.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G00870.1
Unique NameNO19G00870.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2065
Alignment locationchr19:294870..297361 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:294870..297361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G00870.1 vs.
Match: EWM23598.1 (peroxisome biogenesis factor 10 isoform 2 [Nannochloropsis gaditana])

HSP 1 Score: 324.7 bits (831), Expect = 4.500e-85
Identity = 215/398 (54.02%), Postives = 255/398 (64.07%), Query Frame = 0 
Query:    6 TPSPYIPNPATTAEACPPQRRGGNASTSILLNNLGLPLAAGPDIMLSWEKDAFYAKQIHTQLKELADAVLGAGRAELLSPEVESIGDLLYYTLTVWLGAGGETLGQEYCHLMLVEGQQARGGRVRGEGRRGGGEGILFLPLSGIRRGIVVLGTVLGNYVWERVLHREGWQGDYTQLIRQRQRRQGAAAAAAARGEGGGGGGGRGGQGGGEGGGGGALATIPTIPPHPSQQHQLQQQHQQQHQQQQQAPAPPSSASPPISPLTSSSFSSYLLRRLHHRLSSLLTTLLSLPPFLLLASLLPSSREALLRALHKLHLMSFFFTNQYYTLAMRLAGARTMFIREEGREGRREGGGTGPRRASYVVIGVFILMEMILKATSSIAQRLRRWWMERQELAQQQQQ 404
            +P+P       TA+A        N ++      L LPLAAGPDIMLSWEKDAFYAKQIHTQLKELA+ VLGAG AEL+ PEV+S+GDLLYYTLT   G G ++LGQEYC LMLVE       +V G+GR+GG E  LFLPLS +R  + VLGTVL NYVWERV+ REGWQGDY QL+RQR+R               GG GG GG+  GEGG GG L++ P  P          + H   H        PP+SA               LL+R   RL  LL+ LLS PP+L LASLLPS R+AL R LH+LHLM FF TN+Y+TLAMR+AGART+F RE G EG  EG G+GPRRASYV IGV ILMEM L+A+SS+   LRR W E +    ++QQ
Sbjct:    8 SPAPSTQENKPTADASTHSSATSNLAS--FRRKLNLPLAAGPDIMLSWEKDAFYAKQIHTQLKELAEVVLGAGIAELVDPEVQSVGDLLYYTLTYCTG-GRQSLGQEYCRLMLVE-------QVNGQGRKGGRE--LFLPLSAVRSVVFVLGTVLTNYVWERVIRREGWQGDYAQLVRQRRR---------------GGRGGDGGRARGEGGEGG-LSSPPAAP----------RSHPPGH--------PPTSAP--------------LLQRCLQRLRRLLSLLLSSPPYLFLASLLPSPRDALFRTLHRLHLMVFFLTNRYFTLAMRVAGARTIFTREMGGEG-PEGEGSGPRRASYVAIGVLILMEMGLRASSSVMSALRRLWEEHRRREGERQQ 344
The following BLAST results are available for this feature:
BLAST of NO19G00870.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23598.14.500e-8554.02peroxisome biogenesis factor 10 isoform 2 [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G00870NO19G00870Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G00870.1NO19G00870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G00870.1.cds1NO19G00870.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00870.1.cds2NO19G00870.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00870.1.cds3NO19G00870.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G00870.1 ID=NO19G00870.1|Name=NO19G00870.1|organism=Nannochloropsis oceanica|type=mRNA|length=2065bp
AGTACTCGATCTTCGACATCACTTCATGTGCCGATTCTTCACCCTTAGTG
ACGCCCAAATGCCATACACTCACACATCTCAGGCTTCTTTCCCTGGCCTC
CTTCTCACATAGGCCTTGGTGATCTGGTGTTGTGTACCTTGTTGTTCCAA
TCCCCAAAAGCAGCCAGTGTACCGCCCCCTCAGCATTATTACCATCATTC
ACACCGGCCAAAGGACGCCAGCATGAGCGCTCCCTCTACTCCCTCTCCCT
ATATTCCTAACCCTGCTACTACTGCTGAGGCCTGTCCACCACAACGCCGT
GGAGGCAATGCCAGCACAAGCATTCTTCTTAACAATCTGGGCTTGCCCTT
GGCGGCGGGACCTGACATAATGCTCTCGTGGGAGAAAGACGCTTTCTATG
CGAAGCAGATCCACACCCAACTCAAGGAGCTAGCCGACGCGGTGCTCGGC
GCAGGGAGAGCAGAGCTGTTGAGTCCAGAAGTGGAGTCGATAGGAGACTT
GCTTTACTACACACTAACAGTGTGGTTGGGTGCAGGGGGAGAGACACTGG
GGCAGGAATATTGCCACTTGATGCTTGTGGAGGGCCAGCAAGCAAGAGGA
GGACGAGTACGAGGAGAAGGAAGGAGGGGAGGAGGAGAAGGGATATTATT
CTTGCCCCTGAGCGGGATTAGGAGGGGGATAGTGGTCCTAGGAACGGTGT
TAGGGAATTATGTTTGGGAGCGTGTCCTGCACCGCGAAGGCTGGCAAGGC
GACTACACCCAGCTTATACGGCAACGGCAACGGCGGCAAGGAGCAGCAGC
AGCAGCAGCAGCAAGAGGAGAAGGAGGAGGAGGAGGGGGAGGAAGAGGAG
GACAAGGAGGAGGAGAAGGAGGAGGAGGAGGGGCATTGGCCACGATACCT
ACCATACCACCACATCCCTCCCAGCAGCACCAACTACAGCAGCAACATCA
GCAGCAACATCAGCAACAACAGCAAGCACCAGCTCCCCCGTCCTCTGCCT
CCCCTCCTATTTCCCCTTTAACCTCCTCCTCGTTTTCATCCTACCTTCTT
CGACGGCTCCATCATCGCCTGTCCTCCCTCCTCACCACCCTCCTCTCCCT
CCCCCCATTTCTCCTCCTCGCCTCCCTTCTCCCCTCTTCCCGCGAAGCCC
TCCTACGTGCCCTGCACAAGCTTCACTTAATGTCCTTCTTCTTCACGAAC
CAATATTACACCCTCGCCATGCGCCTGGCGGGGGCCCGGACCATGTTCAT
CCGCGAGGAAGGGAGGGAGGGAAGGAGAGAGGGGGGAGGAACGGGCCCAC
GGAGAGCCAGCTATGTGGTGATTGGTGTCTTCATTTTGATGGAGATGATT
CTGAAGGCGACGTCAAGCATAGCCCAGCGCTTGCGCCGCTGGTGGATGGA
AAGGCAAGAGCTTGCGCAACAGCAGCAACAGCAGCAACAGCAGCAGTTGG
TCGCATACATTGCTACCCCCCTTCTCCCCTCTCTTCCTCGGTCTCAACAG
AAGCAGGAGGGCAAGAAGGCGAAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAAGAAGAGGGAGAGGGGTGGGAGTGAAACATTCCATGTCTTACACACG
CACTTTAATGACCGAGGCTCGTGTCCCCTCTGGTGCTGCTGCCTTGGGCC
ATAGAAGCAGAGGGAATAGCATTGAGATCGACCATGTAAGGGAGGGTGGT
AGAGAGGAAGGGATGGAGAAGAAGTGTGCCTTGTGCATGAGTTCGCGGAA
AAACCCGGCAGTGACCCCATGTGGCCACGTCTTTTGTTGGAAGTGTGTGT
TGGCATGGTGCAGCGAGCAACCCGAGTGTCCTTTGTGTCGGAGCAAGTGC
GCACCGCAATCGATACTGCACATTGTGAACATGAGTGTGTGAGGTGGGTG
GAGGGTCTCCCTCCCTCCTTTTCTTTTACCGGGGGCATAAAGAGGAGAAG
TGTAGATATATGAAAGGTGAATCGGATGAAGGAAAGGGAAGAGAAAACTT
GAGAAAAAGTACAGAAGCAAAAGGAAGCCAGTCATTTGTATTGAACCACA
AGGCTTCGAACATGT
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protein sequence of NO19G00870.1

>NO19G00870.1-protein ID=NO19G00870.1-protein|Name=NO19G00870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=452bp
MSAPSTPSPYIPNPATTAEACPPQRRGGNASTSILLNNLGLPLAAGPDIM
LSWEKDAFYAKQIHTQLKELADAVLGAGRAELLSPEVESIGDLLYYTLTV
WLGAGGETLGQEYCHLMLVEGQQARGGRVRGEGRRGGGEGILFLPLSGIR
RGIVVLGTVLGNYVWERVLHREGWQGDYTQLIRQRQRRQGAAAAAAARGE
GGGGGGGRGGQGGGEGGGGGALATIPTIPPHPSQQHQLQQQHQQQHQQQQ
QAPAPPSSASPPISPLTSSSFSSYLLRRLHHRLSSLLTTLLSLPPFLLLA
SLLPSSREALLRALHKLHLMSFFFTNQYYTLAMRLAGARTMFIREEGREG
RREGGGTGPRRASYVVIGVFILMEMILKATSSIAQRLRRWWMERQELAQQ
QQQQQQQQLVAYIATPLLPSLPRSQQKQEGKKAKEEEEEEEEEEEEGEGW
E*
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mRNA from alignment at chr19:294870..297361+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G00870.1 ID=NO19G00870.1|Name=NO19G00870.1|organism=Nannochloropsis oceanica|type=mRNA|length=2492bp|location=Sequence derived from alignment at chr19:294870..297361+ (Nannochloropsis oceanica)
AGTACTCGATCTTCGACATCACTTCATGTGCCGATTCTTCACCCTTAGTG
ACGCCCAAATGCCATACACTCACACATCTCAGGCTTCTTTCCCTGGCCTC
CTTCTCACATAGGCCTTGGTGATCTGGTGTTGTGTACCTTGTTGTTCCAA
TCCCCAAAAGCAGCCAGTGTACCGCCCCCTCAGCATTATTACCATCATTC
ACACCGGCCAAAGGACGCCAGCATGAGCGCTCCCTCTACTCCCTCTCCCT
ATATTCCTAACCCTGCTACTACTGCTGAGGCCTGTCCACCACAACGCCGT
GGAGGCAATGCCAGCACAAGCATTCTTCTTAACAATCTGGGCTTGCCCTT
GGCGGCGGGACCTGACATAATGCTCTCGTGGGAGAAAGACGCTTTCTATG
CGAAGCAGATCCACACCCAACTCAAGGTCCGTCTTAGTCCTAGTCTTTGC
GTATTGTATGATAATGCTGGCTCCCTCTGTCTTTACATCTCTGGCTTCCC
TCGGTGCTTTCACTATCTTATCTCACCTTGATCATGCTCTCTCCCTCCCT
CCCTTCCTCCCTCCCCTTCCTCCCTCCCCTTCCTCCCGCCTTTCTCGATG
TAGGAGCTAGCCGACGCGGTGCTCGGCGCAGGGAGAGCAGAGCTGTTGAG
TCCAGAAGTGGAGTCGATAGGAGACTTGCTTTACTACACACTAACAGTGT
GGTTGGGTGCAGGGGGAGAGACACTGGGGCAGGAATATTGCCACTTGATG
CTTGTGGAGGGCCAGCAAGCAAGAGGAGGACGAGTACGAGGAGAAGGAAG
GAGGGGAGGAGGAGAAGGGATATTATTCTTGCCCCTGAGCGGGATTAGGA
GGGGGATAGTGGTCCTAGGAACGGTGTTAGGGAATTATGTTTGGGAGGTA
CGGCAGGGAGGGAGAGAGGGTGAGAGGGAGGGAGGGAGGGAGGAGATTGT
TGTTTTGGGGTATGTGACGATGTGGATACCGCCTCGGTCGTTTCTTTTCC
TCCCTCTCGTTGTCATGTATCACTTGGGTGTCACTTCGTCTCCCTGCCTC
CGCCGGACGCCCGATTCACTGAAAATTTCCATTCAATGCTCCCTCTCTCC
CTCCTTTCCTTCCCCTTTCCCTCCCTCCCTCCTCCTCCCCCCTCTAGCGT
GTCCTGCACCGCGAAGGCTGGCAAGGCGACTACACCCAGCTTATACGGCA
ACGGCAACGGCGGCAAGGAGCAGCAGCAGCAGCAGCAGCAAGAGGAGAAG
GAGGAGGAGGAGGGGGAGGAAGAGGAGGACAAGGAGGAGGAGAAGGAGGA
GGAGGAGGGGCATTGGCCACGATACCTACCATACCACCACATCCCTCCCA
GCAGCACCAACTACAGCAGCAACATCAGCAGCAACATCAGCAACAACAGC
AAGCACCAGCTCCCCCGTCCTCTGCCTCCCCTCCTATTTCCCCTTTAACC
TCCTCCTCGTTTTCATCCTACCTTCTTCGACGGCTCCATCATCGCCTGTC
CTCCCTCCTCACCACCCTCCTCTCCCTCCCCCCATTTCTCCTCCTCGCCT
CCCTTCTCCCCTCTTCCCGCGAAGCCCTCCTACGTGCCCTGCACAAGCTT
CACTTAATGTCCTTCTTCTTCACGAACCAATATTACACCCTCGCCATGCG
CCTGGCGGGGGCCCGGACCATGTTCATCCGCGAGGAAGGGAGGGAGGGAA
GGAGAGAGGGGGGAGGAACGGGCCCACGGAGAGCCAGCTATGTGGTGATT
GGTGTCTTCATTTTGATGGAGATGATTCTGAAGGCGACGTCAAGCATAGC
CCAGCGCTTGCGCCGCTGGTGGATGGAAAGGCAAGAGCTTGCGCAACAGC
AGCAACAGCAGCAACAGCAGCAGTTGGTCGCATACATTGCTACCCCCCTT
CTCCCCTCTCTTCCTCGGTCTCAACAGAAGCAGGAGGGCAAGAAGGCGAA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAGGGAGAGGGGTGGG
AGTGAAACATTCCATGTCTTACACACGCACTTTAATGACCGAGGCTCGTG
TCCCCTCTGGTGCTGCTGCCTTGGGCCATAGAAGCAGAGGGAATAGCATT
GAGATCGACCATGTAAGGGAGGGTGGTAGAGAGGAAGGGATGGAGAAGAA
GTGTGCCTTGTGCATGAGTTCGCGGAAAAACCCGGCAGTGACCCCATGTG
GCCACGTCTTTTGTTGGAAGTGTGTGTTGGCATGGTGCAGCGAGCAACCC
GAGTGTCCTTTGTGTCGGAGCAAGTGCGCACCGCAATCGATACTGCACAT
TGTGAACATGAGTGTGTGAGGTGGGTGGAGGGTCTCCCTCCCTCCTTTTC
TTTTACCGGGGGCATAAAGAGGAGAAGTGTAGATATATGAAAGGTGAATC
GGATGAAGGAAAGGGAAGAGAAAACTTGAGAAAAAGTACAGAAGCAAAAG
GAAGCCAGTCATTTGTATTGAACCACAAGGCTTCGAACATGT
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Coding sequence (CDS) from alignment at chr19:294870..297361+

>NO19G00870.1 ID=NO19G00870.1|Name=NO19G00870.1|organism=Nannochloropsis oceanica|type=CDS|length=1356bp|location=Sequence derived from alignment at chr19:294870..297361+ (Nannochloropsis oceanica)
ATGAGCGCTCCCTCTACTCCCTCTCCCTATATTCCTAACCCTGCTACTAC
TGCTGAGGCCTGTCCACCACAACGCCGTGGAGGCAATGCCAGCACAAGCA
TTCTTCTTAACAATCTGGGCTTGCCCTTGGCGGCGGGACCTGACATAATG
CTCTCGTGGGAGAAAGACGCTTTCTATGCGAAGCAGATCCACACCCAACT
CAAGGAGCTAGCCGACGCGGTGCTCGGCGCAGGGAGAGCAGAGCTGTTGA
GTCCAGAAGTGGAGTCGATAGGAGACTTGCTTTACTACACACTAACAGTG
TGGTTGGGTGCAGGGGGAGAGACACTGGGGCAGGAATATTGCCACTTGAT
GCTTGTGGAGGGCCAGCAAGCAAGAGGAGGACGAGTACGAGGAGAAGGAA
GGAGGGGAGGAGGAGAAGGGATATTATTCTTGCCCCTGAGCGGGATTAGG
AGGGGGATAGTGGTCCTAGGAACGGTGTTAGGGAATTATGTTTGGGAGCG
TGTCCTGCACCGCGAAGGCTGGCAAGGCGACTACACCCAGCTTATACGGC
AACGGCAACGGCGGCAAGGAGCAGCAGCAGCAGCAGCAGCAAGAGGAGAA
GGAGGAGGAGGAGGGGGAGGAAGAGGAGGACAAGGAGGAGGAGAAGGAGG
AGGAGGAGGGGCATTGGCCACGATACCTACCATACCACCACATCCCTCCC
AGCAGCACCAACTACAGCAGCAACATCAGCAGCAACATCAGCAACAACAG
CAAGCACCAGCTCCCCCGTCCTCTGCCTCCCCTCCTATTTCCCCTTTAAC
CTCCTCCTCGTTTTCATCCTACCTTCTTCGACGGCTCCATCATCGCCTGT
CCTCCCTCCTCACCACCCTCCTCTCCCTCCCCCCATTTCTCCTCCTCGCC
TCCCTTCTCCCCTCTTCCCGCGAAGCCCTCCTACGTGCCCTGCACAAGCT
TCACTTAATGTCCTTCTTCTTCACGAACCAATATTACACCCTCGCCATGC
GCCTGGCGGGGGCCCGGACCATGTTCATCCGCGAGGAAGGGAGGGAGGGA
AGGAGAGAGGGGGGAGGAACGGGCCCACGGAGAGCCAGCTATGTGGTGAT
TGGTGTCTTCATTTTGATGGAGATGATTCTGAAGGCGACGTCAAGCATAG
CCCAGCGCTTGCGCCGCTGGTGGATGGAAAGGCAAGAGCTTGCGCAACAG
CAGCAACAGCAGCAACAGCAGCAGTTGGTCGCATACATTGCTACCCCCCT
TCTCCCCTCTCTTCCTCGGTCTCAACAGAAGCAGGAGGGCAAGAAGGCGA
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAGGGAGAGGGGTGG
GAGTGA
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Synonyms
Publications