NO19G00870, NO19G00870 (gene) Nannochloropsis oceanica

Overview
NameNO19G00870
Unique NameNO19G00870
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2492
Alignment locationchr19:294870..297361 +

Link to JBrowse

Properties
Property NameValue
DescriptionPeroxisome biogenesis factor 10 isoform 2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:294870..297361 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0016558protein import into peroxisome matrix
GO:0007031peroxisome organization
Vocabulary: Cellular Component
TermDefinition
GO:0005779integral component of peroxisomal membrane
Vocabulary: INTERPRO
TermDefinition
IPR025654PEX10
IPR006845Pex_N
Homology
BLAST of NO19G00870 vs. NCBI_GenBank
Match: EWM23598.1 (peroxisome biogenesis factor 10 isoform 2 [Nannochloropsis gaditana])

HSP 1 Score: 268.1 bits (684), Expect = 5.000e-68
Identity = 228/383 (59.53%), Postives = 256/383 (66.84%), Query Frame = 0
Query:    6 TPSPYIPNPATTAEACPPQRRGGNASTSILLNNLGLPLAAGPDIMLSWEKDAFYAKQIHTQLKELADAVLGAGRAELLSPEVESIGDLLYYTLTVWLGAGGETLGQEYCHLMLVEGQQARGGRVRGEGRRGGGEGILFLPLSGIRRGIVVLGTVLGNYVWERVLHREGWQGDYTQLIRQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLLPSSREALLRALHKLHLMSFFFTNQYYTLAMRLAGARTMFIREEGREGRREGGGTGPRRASYVVIGVFILMEMILKATSSIAQRLR 389
            +P+P       TA+A        N ++      L LPLAAGPDIMLSWEKDAFYAKQIHTQLKELA+ VLGAG AEL+ PEV+S+GDLLYYTLT   G G ++LGQEYC LMLVE       +V G+GR+GG E  LFLPLS +R  + VLGTVL NYVWERV+ REGWQGDY QL+RQR                                                XXXXXXXXXXXXXXXXXXXXX    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        SLLPS R+AL R LH+LHLM FF TN+Y+TLAMR+AGART+F RE G EG  EG G+GPRRASYV IGV ILMEM L+A+SS+   LR
Sbjct:    8 SPAPSTQENKPTADASTHSSATSNLAS--FRRKLNLPLAAGPDIMLSWEKDAFYAKQIHTQLKELAEVVLGAGIAELVDPEVQSVGDLLYYTLTYCTG-GRQSLGQEYCRLMLVE-------QVNGQGRKGGRE--LFLPLSAVRSVVFVLGTVLTNYVWERVIRREGWQGDYAQLVRQR------------------------------------------------XXXXXXXXXXXXXXXXXXXXXSSPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPPYLFLASLLPSPRDALFRTLHRLHLMVFFLTNRYFTLAMRVAGARTIFTREMGGEG-PEGEGSGPRRASYVAIGVLILMEMGLRASSSVMSALR 329          
BLAST of NO19G00870 vs. NCBI_GenBank
Match: XP_007781107.1 (hypothetical protein W97_05029 [Coniosporium apollinis CBS 100218] >EON65790.1 hypothetical protein W97_05029 [Coniosporium apollinis CBS 100218])

HSP 1 Score: 73.9 bits (180), Expect = 1.400e-9
Identity = 47/128 (36.72%), Postives = 66/128 (51.56%), Query Frame = 0
Query:   42 PLAAGPDIMLSWEKDAFYAKQIHTQLKELADAVLGAGRAELLSPEVESIGDLLYYTLTVWLGAGGETLGQEYCHLMLVEGQQARGGRVRGEGRRGGGEGILFLPLSGIRRGIVVLGTVLGNYVWERVL 170
            P A  PDI+ + +KDA++A  + T L  L  + LGA  A   + +  +  +LLY  LT   G G  TLG+EYC ++L+EG+    GR+ G GRR G                 +LG+VL  Y   RVL
Sbjct:    7 PFATSPDIIRTHQKDAYFAGTLSTSLSSLLRSALGARFAHAHATDARTAAELLYLALTT--GVGNRTLGEEYCDVVLIEGET---GRLAGVGRRAG----------------YILGSVLVPYGLGRVL 113          
BLAST of NO19G00870 vs. NCBI_GenBank
Match: KFH48021.1 (Peroxisome biogenesis factor-like protein [Acremonium chrysogenum ATCC 11550])

HSP 1 Score: 69.7 bits (169), Expect = 2.600e-8
Identity = 43/105 (40.95%), Postives = 58/105 (55.24%), Query Frame = 0
Query:   42 PLAAGPDIMLSWEKDAFYAKQIHTQLKELADAVLGAGRAELLSPEVESIGDLLYYTLTVWLGAGGETLGQEYCHLMLVEGQQARGGRVRGEGRRGGG-EGILFLP 146
            P AA PDI+ S +KDA+Y   +   L +L   +LGA  A  L+PE+ +   LLY+ LT     G  TLG+EYC L+ V+   A  GR+    RR G   G + LP
Sbjct:   13 PFAAAPDIIRSHQKDAYYTGHLTNTLTDLHRRILGARSAHALAPELRTAASLLYFALTTL--PGNRTLGEEYCDLVQVD---AATGRLPSVRRRAGYIAGSILLP 112          
BLAST of NO19G00870 vs. NCBI_GenBank
Match: KXX82057.1 (Peroxisome biogenesis factor 10 [Madurella mycetomatis])

HSP 1 Score: 68.9 bits (167), Expect = 4.500e-8
Identity = 47/130 (36.15%), Postives = 67/130 (51.54%), Query Frame = 0
Query:   42 PLAAGPDIMLSWEKDAFYAKQIHTQLKELADAVLGAGRAELLSPEVESIGDLLYYTLTVWLGAGGETLGQEYCHLMLVEGQQARGGRVRGEGRRGGGEGILFLPLSGIRRGIVVLGTVLGNYVWERVLHR 172
            P AA PDI+ + +KDA++   +  QL +L   + GA  A   + E  +  D LY  LT  L  G  TLG+EYC L+ VE             R+   EG+L LP S  RR   +L +V+  Y++ R+L R
Sbjct:   22 PFAAAPDIIRAHQKDAYFQGVLTNQLSDLHRRLRGARSAHAWATETRTFADALYLCLTTLL--GNRTLGEEYCDLIQVEAPSHAPKTNLAIERKQDEEGVLVLP-SLQRRAGYILTSVILPYIFSRMLPR 148          
BLAST of NO19G00870 vs. NCBI_GenBank
Match: XP_018030763.1 (hypothetical protein CC84DRAFT_1209367 [Paraphaeosphaeria sporulosa] >OAG00398.1 hypothetical protein CC84DRAFT_1209367 [Paraphaeosphaeria sporulosa])

HSP 1 Score: 68.2 bits (165), Expect = 7.600e-8
Identity = 45/129 (34.88%), Postives = 62/129 (48.06%), Query Frame = 0
Query:   42 PLAAGPDIMLSWEKDAFYAKQIHTQLKELADAVLGAGRAELLSPEVESIGDLLYYTLTVWLGAGGETLGQEYCHLMLVEGQQARGGRVRGEGRRGGGEGILFLPLSGI-RRGIVVLGTVLGNYVWERVL 170
            P A  PD++ S +KDA+++  +  QL  L   V GA  A   + E    G+LLY  LT  +  G  TLG+EYC ++ VEG+  R                    L G+ RR   +L  VLG YV  R+L
Sbjct:   10 PFATSPDVIRSHQKDAYFSAVLLEQLTTLLRKVKGARYAHTYTSETRVFGELLYLGLTTLI--GNRTLGEEYCDIIQVEGESGR--------------------LPGLARRAAYILSCVLGPYVLGRIL 116          
BLAST of NO19G00870 vs. NCBI_GenBank
Match: OPB42943.1 (hypothetical protein A0O28_0085790 [Trichoderma guizhouense])

HSP 1 Score: 68.2 bits (165), Expect = 7.600e-8
Identity = 44/128 (34.38%), Postives = 62/128 (48.44%), Query Frame = 0
Query:   42 PLAAGPDIMLSWEKDAFYAKQIHTQLKELADAVLGAGRAELLSPEVESIGDLLYYTLTVWLGAGGETLGQEYCHLMLVEGQQARGGRVRGEGRRGGGEGILFLPLSGIRRGIVVLGTVLGNYVWERVL 170
            P AA PDI+ S +KDA++  Q+     +L   + GA  A  L+PE+ +   LLY+ LT     G  TLG+EYC L+ V+     G               L LP    R   +V GT+L  Y+  R+L
Sbjct:   25 PFAAAPDIVRSHQKDAYFTGQLSNSFTDLYRRLFGARSAHSLAPELRTAASLLYFGLTTL--PGNRTLGEEYCDLVQVDASSTSG---------------LSLPALPSRAAYIV-GTILLPYLASRIL 134          
BLAST of NO19G00870 vs. NCBI_GenBank
Match: CBN76471.1 (peroxisome biogenesis factor 10 [Ectocarpus siliculosus])

HSP 1 Score: 67.8 bits (164), Expect = 1.000e-7
Identity = 52/137 (37.96%), Postives = 70/137 (51.09%), Query Frame = 0
Query:   41 LPLAAGPDIMLSWEKDAFYAKQIHTQ-LKELADAVLGAGRAELLSPEVESIGDLLYYTLTVWLGAGGETLGQEYCHLMLVEGQQARGGRVRGEGRRGGGEGILFLPLSGIRRGIVVLGTVLGNYVWERVLHREGWQG 177
            L  AA PD++LS E+D +YA  +  +   ELA+ +LGA R  +L+PE+ ++   LY+ LT    AG +TLGQEYC + LV             GR GG E     PL            V   Y+ ER+  REGW G
Sbjct:    9 LRYAAQPDVVLSQERDLYYANTLLGEGTSELAETLLGARRVMILAPELRALASCLYFGLTNL--AGKQTLGQEYCGIDLVL-----------SGRGGGRES---SPLPRRPLQAYTFLRVAVPYLQERM--REGWHG 127          
BLAST of NO19G00870 vs. NCBI_GenBank
Match: KFH64176.1 (hypothetical protein MVEG_10001 [Mortierella verticillata NRRL 6337])

HSP 1 Score: 67.8 bits (164), Expect = 1.000e-7
Identity = 32/82 (39.02%), Postives = 51/82 (62.20%), Query Frame = 0
Query:   38 NLGLPLAAGPDIMLSWEKDAFYAKQIHTQLKELADAVLGAGRAELLSPEVESIGDLLYYTLTVWLGAGGETLGQEYCHLMLV 120
            NL LP A+ PDI+ + +KD++Y + ++ Q+K+    + G+    +   EVE   DL YY+LT  LG   +TLG+EYC +M +
Sbjct:   45 NLALPSASQPDIIRANQKDSYYQQILNDQVKDAVREIFGSRTQHMYQTEVEVFSDLCYYSLTTLLGM--QTLGEEYCDIMQI 124          
BLAST of NO19G00870 vs. NCBI_GenBank
Match: ORY12099.1 (Pex12 amino terminal region-domain-containing protein [Clohesyomyces aquaticus])

HSP 1 Score: 67.8 bits (164), Expect = 1.000e-7
Identity = 45/128 (35.16%), Postives = 63/128 (49.22%), Query Frame = 0
Query:   42 PLAAGPDIMLSWEKDAFYAKQIHTQLKELADAVLGAGRAELLSPEVESIGDLLYYTLTVWLGAGGETLGQEYCHLMLVEGQQARGGRVRGEGRRGGGEGILFLPLSGIRRGIVVLGTVLGNYVWERVL 170
            P A  PDI+ S +KDA+++ Q+  QL  L   V GA  A   + E     ++LY  LT  +  G  TLG+EYC ++ VEG+    GR+   GRR G                 +L  +LG Y+  RVL
Sbjct:   37 PFATSPDIIRSHQKDAYFSGQLLEQLSSLLRKVYGARFAHTYTSETRVFSEILYLGLTTLI--GNRTLGEEYCDIVQVEGE---NGRLPALGRRAG----------------YILSCILGPYLLGRVL 143          
BLAST of NO19G00870 vs. NCBI_GenBank
Match: XP_013949916.1 (hypothetical protein TRIVIDRAFT_175416 [Trichoderma virens Gv29-8] >EHK15723.1 hypothetical protein TRIVIDRAFT_175416 [Trichoderma virens Gv29-8])

HSP 1 Score: 66.6 bits (161), Expect = 2.200e-7
Identity = 44/128 (34.38%), Postives = 62/128 (48.44%), Query Frame = 0
Query:   42 PLAAGPDIMLSWEKDAFYAKQIHTQLKELADAVLGAGRAELLSPEVESIGDLLYYTLTVWLGAGGETLGQEYCHLMLVEGQQARGGRVRGEGRRGGGEGILFLPLSGIRRGIVVLGTVLGNYVWERVL 170
            P AA PDI+ S +KDA++  Q+     EL   + GA  A  L+PE+ +   LLY+ LT     G  TLG+EYC L+ V+                 G  +  LP     R   ++GT+L  Y+  RVL
Sbjct:   23 PFAAAPDIVRSHQKDAYFTGQLANSFSELHRRLFGARSAHSLAPELRTAASLLYFCLTTL--PGNRTLGEEYCDLVQVDA--------------SAGLSLPALP----SRAAYIVGTILLPYLASRVL 130          
The following BLAST results are available for this feature:
BLAST of NO19G00870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23598.15.000e-6859.53peroxisome biogenesis factor 10 isoform 2 [Nannoch... [more]
XP_007781107.11.400e-936.72hypothetical protein W97_05029 [Coniosporium apoll... [more]
KFH48021.12.600e-840.95Peroxisome biogenesis factor-like protein [Acremon... [more]
KXX82057.14.500e-836.15Peroxisome biogenesis factor 10 [Madurella mycetom... [more]
XP_018030763.17.600e-834.88hypothetical protein CC84DRAFT_1209367 [Paraphaeos... [more]
OPB42943.17.600e-834.38hypothetical protein A0O28_0085790 [Trichoderma gu... [more]
CBN76471.11.000e-737.96peroxisome biogenesis factor 10 [Ectocarpus silicu... [more]
KFH64176.11.000e-739.02hypothetical protein MVEG_10001 [Mortierella verti... [more]
ORY12099.11.000e-735.16Pex12 amino terminal region-domain-containing prot... [more]
XP_013949916.12.200e-734.38hypothetical protein TRIVIDRAFT_175416 [Trichoderm... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004418NSK004418Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G00870.1NO19G00870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
PEX10gene6865Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G00870.1NO19G00870.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G00870 ID=NO19G00870|Name=NO19G00870|organism=Nannochloropsis oceanica|type=gene|length=2492bp
AGTACTCGATCTTCGACATCACTTCATGTGCCGATTCTTCACCCTTAGTG
ACGCCCAAATGCCATACACTCACACATCTCAGGCTTCTTTCCCTGGCCTC
CTTCTCACATAGGCCTTGGTGATCTGGTGTTGTGTACCTTGTTGTTCCAA
TCCCCAAAAGCAGCCAGTGTACCGCCCCCTCAGCATTATTACCATCATTC
ACACCGGCCAAAGGACGCCAGCATGAGCGCTCCCTCTACTCCCTCTCCCT
ATATTCCTAACCCTGCTACTACTGCTGAGGCCTGTCCACCACAACGCCGT
GGAGGCAATGCCAGCACAAGCATTCTTCTTAACAATCTGGGCTTGCCCTT
GGCGGCGGGACCTGACATAATGCTCTCGTGGGAGAAAGACGCTTTCTATG
CGAAGCAGATCCACACCCAACTCAAGgtccgtcttagtcctagtctttgc
gtattgtatgataatgctggctccctctgtctttacatctctggcttccc
tcggtgctttcactatcttatctcaccttgatcatgctctctccctccct
cccttcctccctccccttcctccctccccttcctcccgcctttctcgatg
tagGAGCTAGCCGACGCGGTGCTCGGCGCAGGGAGAGCAGAGCTGTTGAG
TCCAGAAGTGGAGTCGATAGGAGACTTGCTTTACTACACACTAACAGTGT
GGTTGGGTGCAGGGGGAGAGACACTGGGGCAGGAATATTGCCACTTGATG
CTTGTGGAGGGCCAGCAAGCAAGAGGAGGACGAGTACGAGGAGAAGGAAG
GAGGGGAGGAGGAGAAGGGATATTATTCTTGCCCCTGAGCGGGATTAGGA
GGGGGATAGTGGTCCTAGGAACGGTGTTAGGGAATTATGTTTGGGAGgta
cggcagggagggagagagggtgagagggagggagggagggaggagattgt
tgttttggggtatgtgacgatgtggataccgcctcggtcgtttcttttcc
tccctctcgttgtcatgtatcacttgggtgtcacttcgtctccctgcctc
cgccggacgcccgattcactgaaaatttccattcaatgctccctctctcc
ctcctttccttcccctttccctccctccctcctcctcccccctctagCGT
GTCCTGCACCGCGAAGGCTGGCAAGGCGACTACACCCAGCTTATACGGCA
ACGGCAACGGCGGCAAGGAGCAGCAGCAGCAGCAGCAGCAAGAGGAGAAG
GAGGAGGAGGAGGGGGAGGAAGAGGAGGACAAGGAGGAGGAGAAGGAGGA
GGAGGAGGGGCATTGGCCACGATACCTACCATACCACCACATCCCTCCCA
GCAGCACCAACTACAGCAGCAACATCAGCAGCAACATCAGCAACAACAGC
AAGCACCAGCTCCCCCGTCCTCTGCCTCCCCTCCTATTTCCCCTTTAACC
TCCTCCTCGTTTTCATCCTACCTTCTTCGACGGCTCCATCATCGCCTGTC
CTCCCTCCTCACCACCCTCCTCTCCCTCCCCCCATTTCTCCTCCTCGCCT
CCCTTCTCCCCTCTTCCCGCGAAGCCCTCCTACGTGCCCTGCACAAGCTT
CACTTAATGTCCTTCTTCTTCACGAACCAATATTACACCCTCGCCATGCG
CCTGGCGGGGGCCCGGACCATGTTCATCCGCGAGGAAGGGAGGGAGGGAA
GGAGAGAGGGGGGAGGAACGGGCCCACGGAGAGCCAGCTATGTGGTGATT
GGTGTCTTCATTTTGATGGAGATGATTCTGAAGGCGACGTCAAGCATAGC
CCAGCGCTTGCGCCGCTGGTGGATGGAAAGGCAAGAGCTTGCGCAACAGC
AGCAACAGCAGCAACAGCAGCAGTTGGTCGCATACATTGCTACCCCCCTT
CTCCCCTCTCTTCCTCGGTCTCAACAGAAGCAGGAGGGCAAGAAGGCGAA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAGGGAGAGGGGTGGG
AGTGAAACATTCCATGTCTTACACACGCACTTTAATGACCGAGGCTCGTG
TCCCCTCTGGTGCTGCTGCCTTGGGCCATAGAAGCAGAGGGAATAGCATT
GAGATCGACCATGTAAGGGAGGGTGGTAGAGAGGAAGGGATGGAGAAGAA
GTGTGCCTTGTGCATGAGTTCGCGGAAAAACCCGGCAGTGACCCCATGTG
GCCACGTCTTTTGTTGGAAGTGTGTGTTGGCATGGTGCAGCGAGCAACCC
GAGTGTCCTTTGTGTCGGAGCAAGTGCGCACCGCAATCGATACTGCACAT
TGTGAACATGAGTGTGTGAGGTGGGTGGAGGGTCTCCCTCCCTCCTTTTC
TTTTACCGGGGGCATAAAGAGGAGAAGTGTAGATATATGAAAGGTGAATC
GGATGAAGGAAAGGGAAGAGAAAACTTGAGAAAAAGTACAGAAGCAAAAG
GAAGCCAGTCATTTGTATTGAACCACAAGGCTTCGAACATGT
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protein sequence of NO19G00870.1

>NO19G00870.1-protein ID=NO19G00870.1-protein|Name=NO19G00870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=452bp
MSAPSTPSPYIPNPATTAEACPPQRRGGNASTSILLNNLGLPLAAGPDIM
LSWEKDAFYAKQIHTQLKELADAVLGAGRAELLSPEVESIGDLLYYTLTV
WLGAGGETLGQEYCHLMLVEGQQARGGRVRGEGRRGGGEGILFLPLSGIR
RGIVVLGTVLGNYVWERVLHREGWQGDYTQLIRQRQRRQGAAAAAAARGE
GGGGGGGRGGQGGGEGGGGGALATIPTIPPHPSQQHQLQQQHQQQHQQQQ
QAPAPPSSASPPISPLTSSSFSSYLLRRLHHRLSSLLTTLLSLPPFLLLA
SLLPSSREALLRALHKLHLMSFFFTNQYYTLAMRLAGARTMFIREEGREG
RREGGGTGPRRASYVVIGVFILMEMILKATSSIAQRLRRWWMERQELAQQ
QQQQQQQQLVAYIATPLLPSLPRSQQKQEGKKAKEEEEEEEEEEEEGEGW
E*
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Synonyms
Publications