NO19G00670.1, NO19G00670.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G00670.1
Unique NameNO19G00670.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3039
Alignment locationchr19:241841..245524 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:241841..245524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO19G00670.1 vs.
Match: GAY00776.1 (40S ribosomal protein S13 [Pythium insidiosum])

HSP 1 Score: 263.5 bits (672), Expect = 4.200e-67
Identity = 129/151 (85.43%), Postives = 143/151 (94.70%), Query Frame = 0 
Query:    1 MGRMHSSGKGMASSAIPYKRTPPSWVKATAKDVEEHVCKLAKKGLTPSNIGVILRDSYGIAQVKSVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYRTTRKLTPNWKYESSTAASLVA 152
            MGRMHS GKGM+SSA+PYKRTPPSW+K +A+DVEEH+CK AKKGL+PS IGVILRDS+GIAQVKSVTGSK+LR+LKKN LAPEIPEDLY LIKKAVAVRKHLERNR+DKDSKFRLILIESRIHRLARYYRT RKL PNWKYES+TA++LVA
Sbjct:    1 MGRMHSKGKGMSSSALPYKRTPPSWLKVSAEDVEEHICKFAKKGLSPSQIGVILRDSHGIAQVKSVTGSKVLRILKKNGLAPEIPEDLYQLIKKAVAVRKHLERNRQDKDSKFRLILIESRIHRLARYYRTNRKLAPNWKYESATASALVA 151
The following BLAST results are available for this feature:
BLAST of NO19G00670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
GAY00776.14.200e-6785.4340S ribosomal protein S13 [Pythium insidiosum][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G00670NO19G00670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G00670.1NO19G00670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G00670.1.cds1NO19G00670.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00670.1.cds2NO19G00670.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G00670.1 ID=NO19G00670.1|Name=NO19G00670.1|organism=Nannochloropsis oceanica|type=mRNA|length=3039bp
AGGCATGGTTGCGTGTGTATCTGTGTGCAGTGGATATTGTTACCGAGTTT
GGTGAGCGTGAGTCCGTTAGTGCCCTGGTGGTGGTGGATTAGGAGAGTGG
GTGACTCGGTGTCCATGGCTTTCTTCGCTCATTATAGGAGGGGAAAGGAA
TGAGGGAGGGTGGGGAGACCGCGTCTGTTGTTGACCACCGATTTACTTCT
TGCCTCCCTTCCCCTCCCTCCCCTCAATCCGTACGACACAAATAGTAGCC
GAGTGTCTGCTGCAGAGCGCATGATTAGTGTGGTAGACAACGAGGGAGGG
AAGGATGTACAGGGCATGGCACGGAGAAGCGATGGTGGCCAGGAAGAGGA
GAGGTCGCGAGAACAGGATGTGTTGCGAATGGATAAAAACAGAAAGCGAT
GGCTCTGGGCTTCGAAAGCAGGGGACATTAGGACGTGTAGACCATCTCGA
CGGATCCCTCTGTATCTCTGTTGTGCGTGAATGTTTTCTGTGCACGTGTA
GTGTGTGAGAGTAGAACCCGGGAACTCGAACAGAGAAAAGCATGGGTGGC
TGTGGTGTGGAGGCTTCGTTCCCACCACATGCCCTTCTCCTTCGCCTCGC
CTCTCCCTGCCTTCTTCCACGCACCCTTGCGCCCCTCGTTCTCAATACCT
GGCTCACTTCCACCATTCAAACAACCATCACGATACAGGCATTTATCTAT
CGTTGAAGACTTCTTCCTCCGGTAGATCTTAGCCAAGATGGGTCGCATGC
ACAGCTCCGGCAAGGGCATGGCCTCCTCCGCCATCCCCTACAAGCGCACC
CCCCCTTCGTGGGTCAAGGCCACGGCCAAGGATGTGGAGGAGCACGTGTG
CAAGCTGGCGAAGAAGGGCCTGACCCCTTCCAACATCGGTGTGATTCTTA
GGGACTCCTACGGCATTGCGCAGGTCAAGTCCGTGACCGGCTCTAAGATT
TTGCGTCTGCTCAAGAAGAACCTCCTGGCTCCGGAAATTCCCGAGGATCT
GTACATGTTGATCAAGAAAGCCGTGGCTGTGCGTAAGCATTTGGAGCGCA
ACCGCAAGGATAAGGACAGCAAATTCCGCCTCATTCTCATCGAGAGCCGC
ATTCACCGATTGGCCCGCTACTACCGAACGACCCGCAAGCTGACCCCCAA
CTGGAAGTACGAGTCTTCGACGGCCGCGTCTCTGGTGGCGTAAACATCGC
CTCATGCTGAAGGAGGGAAGGAGGGAAGGAGAGAGGATGGGTGAGAAGGG
TCTTTATCCGATGGTGGGCTTAGGCTGAGCTTGCGGATAGACAGGAGCTG
AACTTCTGTTGTTCTGGGGGTAGGCAAATGAAGGAAGAAAGGAGAAAGGC
GAAAACTTCCTATCCACCTAAAGATGAGACATAGAAATAAGGCAACCCAT
TCAGAACGATACAGGAGAGGTTTATACAAGGCTGAGGGATGGATGAGAGT
TTTTATGCATTCTTTTTTAAACGTTTTCGTCGTGTTCGACGCACCCTTCC
CCTTGTCTCCCGAAGTCGGTCTCGATTTCCTTCTTCCGTCCTCTCTTCTC
TTCCCTCCCTCTCCTTTTTTGCTGCTGAAGTAGAGGTATCTCACCCCCCC
CCGTTTTCGTTTTCTTTTATGTTTCATACTGCGGATGCGTGGGTTTCAGG
GAAATCGTCAAAGAAATGTGTTGTGCTGCCGATGCGTCTTATGTTGGTCC
TTGACCTATGTATCTTCAGGCTCAACGTTGGTTGAGAAGCCAGGTCTCGT
CTTCTTCCCACCGACTGCTTTTATCTTCATTATGCCGTTGTTGCGGTGAT
TGTTTCCATGATTCCTGCCCTTGTTTTCCTCGCCAGCGGCCATGGAGATG
GTGCCATGCCCAACATTTTCCTCCACGCCCTCTCCACTTCTATCACAGCT
CCTTCCCCTTATCCTACCCCTCCTCTCCCCCCCTTCCCTCCCTTGAAGCG
TTTGGTCACACGGGCGAGCCCGAAAGGATCATCACATGCATTTATATTCT
CCTCGCTTTTTTGATTCCTTGATCACTTCAAGCCCTCCTTCATTCTTTCC
TTACATCCATCTCTCCTTCACCTGCTCATCCTGCATTACCATTTTGCTCT
GCTTTTCCACCGCTACCTGCATTCCCTCCTCGCGTCTGTTTTTTCCTCCT
CGCATCGATTTCATCGCTATTGCCACCTTTCACGTTAGTCTCGCTACCCC
CTTCTAGAATGTCTGCACAAGGGCCATCCCCTTCACACCTTCCGCTACCG
TGTTCTCTCCACCTCCCTCGCCCCCTCGCTCCCCGTCCTCCCTCCGCGCC
ATTCTCGGGGTTACGGGTTTGACGCCTTCCTTGCCCTGGGCCCAAGCGTG
TCCTTACAGCTGCGCTTTGGCGCATTGTGCTGCCATGTCGATGGATTTTG
GTCTCTTTGACAAACTCTGGTATGCTGTGAAGAGGGCAGGAAAGGAAGTG
AGTTACTGTGGTTCGCATGTTGTGTCTTGATAGTTGGCGGACACACGCCG
GACGACAGAGTGTGCATGAATACGGCTTGTCTATTGTTTTCATGGAATTA
CAATATATTTACTCAGGATTGCTAGCTTCCTCGTGTTTTTCAGAAGTATA
GATGAGACAACCGACAAACCCGGGCTGCCAATCATGCCTTTTTTATTAAT
TGACCACAAGCTACCAAATAAAACTCTGCGTACATCTCACTTCCCGTACA
CTTTCGTCTATTTTTCTTGTTACTCAACCTCTTTGGTCGCCGCTACAACA
GTCTACACTCGATCGATGAGCATTTCTTTCACGTACTGGTCGAGCCTTTC
GCAGCCTCCTCCGCCCGACCGTCCATCGTTGCCAAGCGGATCGAAAGCTT
TCTGCACCTCATCCCCTGTCATTCGTTTATATTCGATATTTTTGATAGTG
CTGCTTTCACCTGGCACCGCCACACATCCTGGTGGCGGCGTCTGCATGTA
CTTGGAGGGAGAGTAACTGGTGGTCGAGAAAAGCGCAAGCGGTGCTCTGA
CAGACAAGTAACTGGGGCGGACATCGCGGACGAGTGGGG
back to top

protein sequence of NO19G00670.1

>NO19G00670.1-protein ID=NO19G00670.1-protein|Name=NO19G00670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MGRMHSSGKGMASSAIPYKRTPPSWVKATAKDVEEHVCKLAKKGLTPSNI
GVILRDSYGIAQVKSVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRK
HLERNRKDKDSKFRLILIESRIHRLARYYRTTRKLTPNWKYESSTAASLV
A*
back to top

mRNA from alignment at chr19:241841..245524+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G00670.1 ID=NO19G00670.1|Name=NO19G00670.1|organism=Nannochloropsis oceanica|type=mRNA|length=3684bp|location=Sequence derived from alignment at chr19:241841..245524+ (Nannochloropsis oceanica)
AGGCATGGTTGCGTGTGTATCTGTGTGCAGTGGATATTGTTACCGAGTTT
GGTGAGCGTGAGTCCGTTAGTGCCCTGGTGGTGGTGGATTAGGAGAGTGG
GTGACTCGGTGTCCATGGCTTTCTTCGCTCATTATAGGAGGGGAAAGGAA
TGAGGGAGGGTGGGGAGACCGCGTCTGTTGTTGACCACCGATTTACTTCT
TGCCTCCCTTCCCCTCCCTCCCCTCAATCCGTACGACACAAATAGTAGCC
GAGTGTCTGCTGCAGAGCGCATGATTAGTGTGGTAGACAACGAGGGAGGG
AAGGATGTACAGGGCATGGCACGGAGAAGCGATGGTGGCCAGGAAGAGGA
GAGGTCGCGAGAACAGGATGTGTTGCGAATGGATAAAAACAGAAAGCGAT
GGCTCTGGGCTTCGAAAGCAGGGGACATTAGGACGTGTAGACCATCTCGA
CGGATCCCTCTGTATCTCTGTTGTGCGTGAATGTTTTCTGTGCACGTGTA
GTGTGTGAGAGTAGAACCCGGGAACTCGAACAGAGAAAAGCATGGGTGGC
TGTGGTGTGGAGGCTTCGTTCCCACCACATGCCCTTCTCCTTCGCCTCGC
CTCTCCCTGCCTTCTTCCACGCACCCTTGCGCCCCTCGTTCTCAATACCT
GGCTCACTTCCACCATTCAAACAACCATCACGATACAGGCATTTATCTAT
CGTTGAAGACTTCTTCCTCCGGTAGATCTTAGCCAAGGTAAGAAGAGGGG
CATGCAGCAAGGAGAAAGAAATGATGCATGATGAGGAATAGAAGGGGAGG
AGGGAGGGATATGATGGGAAGCGAAAGCGCATATTCTGGTGGTCTGCTGC
CTGATGGGGACGCGTCTAGCTGTGACACTGAGGACGGTGGCTGCTGGTGG
CTGCGGGCGCTGCCTTGGTGATCAATGGGAGTAAAGGGAGGGAAGGAGGT
AGCGTGAACGGATGACGCGGAGAAGTTTAGGGGTCTCTTTACGTATCGCC
CCTGCCGCCCGCCTCTCTGCGATAAATGTGCCTGTTACCCTGCAGCCTCT
ATTCTTCACTGTGTTCCTGTTTTCCAACAGCCTCTATTCTTCCCTGTCTT
TTGTTGCAGTGGCGTCATCCTCTCTTTGCCCCAGTCGTCGTTCTCTCGAC
TCACTCACTCCCCCCCTCCTTCCCTCCCTCCATCCACAGATGGGTCGCAT
GCACAGCTCCGGCAAGGGCATGGCCTCCTCCGCCATCCCCTACAAGCGCA
CCCCCCCTTCGTGGGTCAAGGCCACGGCCAAGGATGTGGAGGAGCACGTG
TGCAAGCTGGCGAAGAAGGGCCTGACCCCTTCCAACATCGGTGTGATTCT
TAGGGACTCCTACGGCATTGCGCAGGTCAAGTCCGTGACCGGCTCTAAGA
TTTTGCGTCTGCTCAAGAAGAACCTCCTGGCTCCGGAAATTCCCGAGGAT
CTGTACATGTTGATCAAGAAAGCCGTGGCTGTGCGTAAGCATTTGGAGCG
CAACCGCAAGGATAAGGACAGCAAATTCCGCCTCATTCTCATCGAGAGCC
GCATTCACCGATTGGTACGTCGCGCACCTGTATTCCTTCCTTCCTTCCTC
CTCACCTTTGTTGCGCCTAGATTCCATGTGTGTGCGACGGAGCATGCAAG
GTGTTATTCGAATCATGGTTTTCGTCGGATGTCGCCATTGTTACTTACTC
TCTTTCTCTCTCCCTCCCTCCCTCCCTCCCTCTCCCTCCTTTCCTCCCTC
CCCGCAGGCCCGCTACTACCGAACGACCCGCAAGCTGACCCCCAACTGGA
AGTACGAGTCTTCGACGGCCGCGTCTCTGGTGGCGTAAACATCGCCTCAT
GCTGAAGGAGGGAAGGAGGGAAGGAGAGAGGATGGGTGAGAAGGGTCTTT
ATCCGATGGTGGGCTTAGGCTGAGCTTGCGGATAGACAGGAGCTGAACTT
CTGTTGTTCTGGGGGTAGGCAAATGAAGGAAGAAAGGAGAAAGGCGAAAA
CTTCCTATCCACCTAAAGATGAGACATAGAAATAAGGCAACCCATTCAGA
ACGATACAGGAGAGGTTTATACAAGGCTGAGGGATGGATGAGAGTTTTTA
TGCATTCTTTTTTAAACGTTTTCGTCGTGTTCGACGCACCCTTCCCCTTG
TCTCCCGAAGTCGGTCTCGATTTCCTTCTTCCGTCCTCTCTTCTCTTCCC
TCCCTCTCCTTTTTTGCTGCTGAAGTAGAGGTATCTCACCCCCCCCCGTT
TTCGTTTTCTTTTATGTTTCATACTGCGGATGCGTGGGTTTCAGGGAAAT
CGTCAAAGAAATGTGTTGTGCTGCCGATGCGTCTTATGTTGGTCCTTGAC
CTATGTATCTTCAGGCTCAACGTTGGTTGAGAAGCCAGGTCTCGTCTTCT
TCCCACCGACTGCTTTTATCTTCATTATGCCGTTGTTGCGGTGATTGTTT
CCATGATTCCTGCCCTTGTTTTCCTCGCCAGCGGCCATGGAGATGGTGCC
ATGCCCAACATTTTCCTCCACGCCCTCTCCACTTCTATCACAGCTCCTTC
CCCTTATCCTACCCCTCCTCTCCCCCCCTTCCCTCCCTTGAAGCGTTTGG
TCACACGGGCGAGCCCGAAAGGATCATCACATGCATTTATATTCTCCTCG
CTTTTTTGATTCCTTGATCACTTCAAGCCCTCCTTCATTCTTTCCTTACA
TCCATCTCTCCTTCACCTGCTCATCCTGCATTACCATTTTGCTCTGCTTT
TCCACCGCTACCTGCATTCCCTCCTCGCGTCTGTTTTTTCCTCCTCGCAT
CGATTTCATCGCTATTGCCACCTTTCACGTTAGTCTCGCTACCCCCTTCT
AGAATGTCTGCACAAGGGCCATCCCCTTCACACCTTCCGCTACCGTGTTC
TCTCCACCTCCCTCGCCCCCTCGCTCCCCGTCCTCCCTCCGCGCCATTCT
CGGGGTTACGGGTTTGACGCCTTCCTTGCCCTGGGCCCAAGCGTGTCCTT
ACAGCTGCGCTTTGGCGCATTGTGCTGCCATGTCGATGGATTTTGGTCTC
TTTGACAAACTCTGGTATGCTGTGAAGAGGGCAGGAAAGGAAGTGAGTTA
CTGTGGTTCGCATGTTGTGTCTTGATAGTTGGCGGACACACGCCGGACGA
CAGAGTGTGCATGAATACGGCTTGTCTATTGTTTTCATGGAATTACAATA
TATTTACTCAGGATTGCTAGCTTCCTCGTGTTTTTCAGAAGTATAGATGA
GACAACCGACAAACCCGGGCTGCCAATCATGCCTTTTTTATTAATTGACC
ACAAGCTACCAAATAAAACTCTGCGTACATCTCACTTCCCGTACACTTTC
GTCTATTTTTCTTGTTACTCAACCTCTTTGGTCGCCGCTACAACAGTCTA
CACTCGATCGATGAGCATTTCTTTCACGTACTGGTCGAGCCTTTCGCAGC
CTCCTCCGCCCGACCGTCCATCGTTGCCAAGCGGATCGAAAGCTTTCTGC
ACCTCATCCCCTGTCATTCGTTTATATTCGATATTTTTGATAGTGCTGCT
TTCACCTGGCACCGCCACACATCCTGGTGGCGGCGTCTGCATGTACTTGG
AGGGAGAGTAACTGGTGGTCGAGAAAAGCGCAAGCGGTGCTCTGACAGAC
AAGTAACTGGGGCGGACATCGCGGACGAGTGGGG
back to top

Coding sequence (CDS) from alignment at chr19:241841..245524+

>NO19G00670.1 ID=NO19G00670.1|Name=NO19G00670.1|organism=Nannochloropsis oceanica|type=CDS|length=456bp|location=Sequence derived from alignment at chr19:241841..245524+ (Nannochloropsis oceanica)
ATGGGTCGCATGCACAGCTCCGGCAAGGGCATGGCCTCCTCCGCCATCCC
CTACAAGCGCACCCCCCCTTCGTGGGTCAAGGCCACGGCCAAGGATGTGG
AGGAGCACGTGTGCAAGCTGGCGAAGAAGGGCCTGACCCCTTCCAACATC
GGTGTGATTCTTAGGGACTCCTACGGCATTGCGCAGGTCAAGTCCGTGAC
CGGCTCTAAGATTTTGCGTCTGCTCAAGAAGAACCTCCTGGCTCCGGAAA
TTCCCGAGGATCTGTACATGTTGATCAAGAAAGCCGTGGCTGTGCGTAAG
CATTTGGAGCGCAACCGCAAGGATAAGGACAGCAAATTCCGCCTCATTCT
CATCGAGAGCCGCATTCACCGATTGGCCCGCTACTACCGAACGACCCGCA
AGCTGACCCCCAACTGGAAGTACGAGTCTTCGACGGCCGCGTCTCTGGTG
GCGTAA
back to top
Synonyms
Publications