NO19G00560, NO19G00560 (gene) Nannochloropsis oceanica

Overview
NameNO19G00560
Unique NameNO19G00560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1531
Alignment locationchr19:216107..217637 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:216107..217637 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO19G00560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR055ncniR055Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G00560.1NO19G00560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606941gene_9729Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G00560.1NO19G00560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G00560 ID=NO19G00560|Name=NO19G00560|organism=Nannochloropsis oceanica|type=gene|length=1531bp
CCAATCACAGCGCGACCCGTGGGAGGATCGAAAAGCTGAGGGAGATTCTA
TGCCAACCAAGTTTGTATTTGCTTTGTTTGTTTGGCTTGCTCTGCAGTTG
TGTGATGAAAATTAAATGTGACTTTTCAATCCATGCACTCCCACAGCCCT
TGGGGATGCCCCTCTCCTATCTGCGCAGCGCAACGAACTCAAGCACGCCA
CACACATACAGAATGCACGTGGAATGCCTCTATAGAACTCACGCAGCATG
AAATTCGTCCAGTGCACGCGCACAAGTCCCCCTCATTCAATGCAATGCAT
TTCGACCCTCTCACCCCTCACCCCCCACCCCTGTACCTTATGGACATATA
TCCGCACAGCTTTCAAGCCTGATCAAGCACTTCCATACCAACCATCATGC
GCTGTTTTTTCGTTTTCACCACTCTCGTAGCCGCGACCAGCCATTTATCC
CTCTTTACGGCTGCGGACTCGCCTGCAAATGATGAGCAGCCCCTGGGAGG
AGAGGACTTATCCTGGTACAATGGGGACAAGATTCTTCTGGGCGGAGAGA
AGCCATCGGGGTACAACGGGCACAAGCAGCCGTCATATTATAATGAGCAT
AAGCAGTACCAGGCCTTGGCGGGAGAGGACGAATTAGCCTGGTACCACGG
GGACAAGCAATACATGGGCGATAAGACATTATTCCGCGACCACCACGACG
TGCCAAAGTACGATAACGACAAGTACTACCACGAGCCCAAACACGCCTCC
AAGTACGATGACGACAAGTACTACCACGAGCCCAAGCATGTCTCCAAGTA
CGACGATGACAAGTACTACCACGAGCCCAAGCATGTCTCCAAGTACGATG
ACGACAAGTACTACCACGAGCCCAAGCCTGTCTCCAAGTACGACGATGAC
AAGTACTATAAGGAGGCCAAGTACGTCTCCAAGTACGATGATGACAAGAA
TTACGACTATAAGCCCCAGACCATCTCCAAGTACGATGACAACAAGTACT
ACGACGATGAGCCCGAGCAAGGCTCCGAGTATGACCACGAAGAACACTAC
TACAAGCCCATGCCTAATTCCAAGGGCAAAGGTAAGGTAGACAAGGGCCA
AGGCAAGGGAGGCTGGATGCAGAAGGGTCAGCCTAAAAAGAATCTGCGCA
AGGGAGGTTATAACAAGCTTTAAAGCAGCGAGGGAGACTATGATAACCTT
TAAAGTAGCAAACCATCATTTAGAGATGAAACAGGGTGGATGGGGTGATA
TATATATAGAGGGTGATAAAGGCAAAATAGGAAGATAGCATTACACGGAA
CTTGACACTTTCATTCAAGCGAGGAACGACCGCGAGGAAAATGAAGTAAA
GGGACCATTCTCTTTCACGCTTTTCCTGTCCTCCCATTTTGATTTTTGGG
GGCCGCTACTCGCCTTCACACCTGACATACAGTTTGGTGTAGATAAGAGA
GGAATTAGGACAAGGGGGATTTCAAAGCGTATATACACCGAAATTTAAGG
AAGTCTGCAAAATCAAAAAGAATAACTACGA
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protein sequence of NO19G00560.1

>NO19G00560.1-protein ID=NO19G00560.1-protein|Name=NO19G00560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MRCFFVFTTLVAATSHLSLFTAADSPANDEQPLGGEDLSWYNGDKILLGG
EKPSGYNGHKQPSYYNEHKQYQALAGEDELAWYHGDKQYMGDKTLFRDHH
DVPKYDNDKYYHEPKHASKYDDDKYYHEPKHVSKYDDDKYYHEPKHVSKY
DDDKYYHEPKPVSKYDDDKYYKEAKYVSKYDDDKNYDYKPQTISKYDDNK
YYDDEPEQGSEYDHEEHYYKPMPNSKGKGKVDKGQGKGGWMQKGQPKKNL
RKGGYNKL*
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Synonyms
Publications