NO19G00500, NO19G00500 (gene) Nannochloropsis oceanica

Overview
NameNO19G00500
Unique NameNO19G00500
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3595
Alignment locationchr19:191150..194744 -

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Properties
Property NameValue
DescriptionLeucine-rich repeat, cysteine-containing subtype
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:191150..194744 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
Homology
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BLAST of NO19G00500 vs. NCBI_GenBank
Match: EWM23557.1 (Leucine-rich repeat, cysteine-containing subtype [Nannochloropsis gaditana])

HSP 1 Score: 106.7 bits (265), Expect = 3.000e-19
Identity = 69/166 (41.57%), Postives = 83/166 (50.00%), Query Frame = 0 
Query:   74 KTARLSSTTQTPVGRAGLSFVXXXXXXXXXXXXXXXXXXXAHQASPRFPLPSELWAQILSFFSLRELPVMTLLDLMGINACTHLRKLDLSNRQTGGGGARVLMERLRXXXXXXXXXXXXXXXXXXXXXXXXXGRAMHAGCLAARVRVLRLKRTGMGSRGMRLLAKA 240
            K AR SSTTQT   R  L+ +                     +ASPRF LPSELW  ++SF +L  +PV +LLDLMGINAC  +R LD S R+ G  G R+L ERLR                           AM    LA  +RVLRL   GMGSRG+ +LAKA
Sbjct:   62 KAARWSSTTQTTASRTALT-LPSTTCAASDTSSLPYSSSSCLEASPRFLLPSELWKHVMSFLNLDAMPVRSLLDLMGINACAQMRSLDFSQRRLGACGTRMLAERLRGGACPELDSLNLTACGIGPGGAEALSIAMQTHGLAPSLRVLRLAGNGMGSRGVTVLAKA 226
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BLAST of NO19G00500 vs. NCBI_GenBank
Match: XP_005853496.1 (ran gtpase activating protein 1, partial [Nannochloropsis gaditana CCMP526] >EKU22865.1 ran gtpase activating protein 1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 105.5 bits (262), Expect = 6.700e-19
Identity = 68/166 (40.96%), Postives = 83/166 (50.00%), Query Frame = 0 
Query:   74 KTARLSSTTQTPVGRAGLSFVXXXXXXXXXXXXXXXXXXXAHQASPRFPLPSELWAQILSFFSLRELPVMTLLDLMGINACTHLRKLDLSNRQTGGGGARVLMERLRXXXXXXXXXXXXXXXXXXXXXXXXXGRAMHAGCLAARVRVLRLKRTGMGSRGMRLLAKA 240
            K AR SSTTQT   R  L+ +                     +ASPRF LPSELW  ++SF +L  +PV +LLDLMGINAC  +R LD S R+ G  G R+L ERLR                           AM    LA  +R+LRL   GMGSRG+ +LAKA
Sbjct:   62 KAARWSSTTQTTASRTALT-LPSTTCAASDTSSLPYSSSSCLEASPRFLLPSELWKHVMSFLNLDAMPVRSLLDLMGINACAQMRSLDFSQRRLGACGTRMLAERLRGGACPELDSLNLTACGIGPGGAEALSIAMQTHGLAPSLRLLRLAGNGMGSRGVTVLAKA 226
The following BLAST results are available for this feature:
BLAST of NO19G00500 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM23557.13.000e-1941.57Leucine-rich repeat, cysteine-containing subtype [... [more]
XP_005853496.16.700e-1940.96ran gtpase activating protein 1, partial [Nannochl... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR055ncniR055Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G00500.1NO19G00500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533443gene_9736Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100631g2gene6899Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G00500.1NO19G00500.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G00500 ID=NO19G00500|Name=NO19G00500|organism=Nannochloropsis oceanica|type=gene|length=3595bp
CTTCACCGGCCGTTGAAGAAGCCAGTGCCGGGACTACGCCACAAAGGCAA
CATCAAAAGCCACTGGTTCTTCGCCTTTGTAGTGTACGCATGCTTTTTTC
TTCTATTTCTTTACTGGTCGCACAGCTGGTGGTTGTTCTGTGCACGTTTG
GCACAATCCTCTTTTCCTTTCTCCTGCCTTTCTCACCGTCGTGCGCCCTC
CGCACCTGCCAAACGCCAAGATAAAAGCGCGTGCTTTTTTCCGCACACTC
CGAGTCTTGTTCCCCCCCAAGCTCCGCATGCCGTCACGTGCTGGTTGTAT
CTTTTCCAGGAGACTCCGCTGGACATCCAAGTAATCAACGCATACCAAAG
GGCATTCTCAGGCACCTCGTATTTAAATTCTCCCTTCCATTTCCATCTAT
CCTCGCACACTCACAGGGGAAGTTGCGCTTCTGTTCGCGTCCAATTTCCT
CTTCCCTTTTGGTCTAGCACTTTCCACGAAGCGACAGTCCCCTACCGCTA
TCATTCCTACCACCAAAGACGGGCCTGCTACTAGCCATTCACAAGGCGGT
GGTCAGCCAGAAGGAGGAAGACAATAAACCCACCCCGCCAGCCCAATCAT
GAAGACGCGACGCTTCTCAACACTCCAAGCAGGGGAGGCGGCAGGAGTAG
AAAATTGTGAAGCAGGAGCAGGAGCTGCGAGAGAAAAGCTGGCTGTCGTG
ACCGCGGGTCTGGCCAACGCCACGACGAGGGTAGGAGCAGGAGGAGCAGC
GACAGCAACGACAGCGACTGCAGTGGCTGCAGCAGCCTCGCTCTCGACAG
GGAGCCCTCGACATAGAAAGACAGCCCGGTTGTCGTCCACTACTCAGACA
CCTGTGGGTCGAGCGGGCCTGTCATTCGTCGCCTCGTCCTCATCCTCCTC
TCTATCCAGCACCATCACTCCCTCCACCCCTCCCTCGGCCCACCAGGCCT
CACCTCGGTTTCCTTTACCTTCGGAGCTATGGGCGCAGATTCTGTCCTTC
TTCAGCTTGCGTGAATTGCCGGTGATGACCTTGCTAGATTTGATGGGCAT
TAATGCCTGCACACACTTGCGAAAGCTAGATCTGTCCAACCGACAGACTG
GGGGGGGAGGAGCGAGGGTGCTGATGGAGAGATTGAGGGAGGGAGCGTGC
CCTGAGATGGAGCAACTGGATCTAACAGGCTTCGAGCTTGGAGTAACGGG
TGTCGAAGCGTTGGGGAGGGCGATGCATGCAGGGTGCCTGGCTGCAAGGG
TGAGGGTGTTGAGGTTGAAGAGGACTGGGATGGGATCGCGGGGGATGAGG
TTATTGGCCAAGGCGTTCGGGGCGGGAGGAGGGAAGAGAGTGGAGGTTTT
GGATGTGGAAGGCAATAACGCGGACGCGGGGGCCATGGGATTGTTGGTAA
CAGCACTGGTGGGGGGGGCGTGTCCGAGATTGAGAGAGTTGGTAATGGGG
CGGAACAGTGTGGGTGATGGGGTATTGGCACGGCTGGCGGGAGGAATGGA
GGGAGGGATGATTGGGAGGTTGAAGGTCTTGAGGGTGGCAGAGGCAGGGG
TGAGCACGGAGGGGGTGAGGAGTCTGGCAAGGGCGTTGTGTGTGGGGGGA
GGGGGAGTGTTGGAGTGTCTGGATCTGAGTGATAATCACTTGTATCCGCA
GGGAGCAGAGGCGATGGCTGTGGCCGTGGCACAGGGGGCAATGCCCGGGC
TACGACGGTTGGTCTTGTCACGGAATAGGATATACGGGGATGGCACGGCG
GCGTTGATGGAGGCATTGGGTCAGGGGCAGTGTCCGCTGTTGTCGGTGCT
GGACCTGAGGGGGAACAAGATCGGAGCCAAGGGCGCGGCGAGTGTGGGAG
GGCTACTAACAGCAGGGACATGCCCGAAGCTGCGGGAGCTAGACGTGGGG
GGGAACTACCTGTATGCCGAGGGGGTGGCTTTGCTAGCCAGTGCGTTGGC
CCAACGGCCGCAGCCGGAACTAAGGACGTTGGACGTGGAGGATAATGCAA
TGACAGCCGAAGGGGCTTTCTTGTTGTCGGAGGCTATGAGGAGGGGGGCG
GTGGTGGGGCTGGAGGTGTTGAATCTGGGGAGGAATGGGATTGGCGGCGA
AGGGGTGGGTTTCGTGATGGCTGCGCTTGCGGAGGGGTGGTGCCCGAGGG
TGAGGAAGTTGAGCCTGCGGAGTAACGAGCTGGGTGTTTTTGGGTTTGCG
CATGTGGCGGCGTGTGTGCAGCAGGGGGGAATGAAGCGGGTCGAGAGCTT
GGACGTGGCCGTGAATGGACTCGGAGAGGAGCCAGGGGTTGTCTTCCTGC
CGATTGTGATGAGCTCGGAATGGATGCCGGTGTTGAGGGAGGTGGATATG
ACGTTTAATGGGCTGGAGGGGGACAGGGCGAGGAACCAGGTGGGAACTTT
GCAAGCGGGGAGGGAGGGACGGAAGGAAGGTGGAGTTGTGGTGCGATTAG
CGAGGAAGAGTGCCGTGCCGATCTTTAGGAGGACGCAGTCAGCACCGGCG
GCGATAGTTGTGCACCACCACCACCACCAACACCACCACCACCACCATCA
GCAGCAGCAGCAGCAGCAGCAGCAGGTCCAGGCCGTGCCACCCCCTCCGG
TACAGCAGCAACAACAGCAGCAGCAGCATCAGCAGCAGCCCCACGCTGCT
TTTTGGGAGATGATTGCAGCGGTCGGCAACAATCAGGGCCAGCCTTGAGG
GGAGAGAGATGGGGGGAAGGATAGCGCGACACCCAAATCATGCACTGCCG
CAGAGACGGTCAAGTCCGTGTTTGTGTGTATGGGGGAACGCTTGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGAAGGAGGAGGAAGA
GGAGGAGGAGGCCTTACGACTACAGCACGTAAATGATCATGTTACGCGTA
ATCAGAGACATGCATGTGTGACTTTATATGCATACATATTTATTTATTTT
TATAAAATAAGGGTTGTCCGGGCCAGAGGAGCAGCAGCATGAGAAGGTGG
AATGGCAGAAAAAGAGGGAGAGACCATCGGGAGGACATAGACAGGGAACG
AGAATTGAGAAGTAGTTAGATCAGGATTTTTTAATCAACAGAACTCATGC
TTGACAAAAGCAATAAGAAAGACGAAACATGCAGGCCCGCAAAACGGCAG
AGAGGAATAGAGAGAGACAAGGAGAAGACCGAAAAGAGGTTTTGATGTCC
AAAGGAGAAGTACAGCTAGAGAGAGAAGAGAGCCAAAATTAGAGTTGGGC
CAAATGATTTCAAAATTTTATTTCACGACAGGAAACATAATCAGTATTCA
GACCGACAGCAGCGCAGGAGGAAGCGACCGCGCCACTTTATGTGATACCT
ATATATCATTTCTACATATTTAATCATATGTACTTATATATCCAGGTGTG
CCATATAGCGTATTAGAAAGCAAGATGGGAGCAGAGATGGCAAGTAGACA
GCTATAAAGAGAGAGAAATAAGAAAAGAGTTGAGGGAGTGCATGAACGAC
GGAAGAATAAGCTAAGCTATTAAAATGAACGCACAGACCGGCGACGGACA
AAACTCTGCTACTGATAGAAGAAATTGAACTTTAAAATACAGAAC
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protein sequence of NO19G00500.1

>NO19G00500.1-protein ID=NO19G00500.1-protein|Name=NO19G00500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=700bp
MKTRRFSTLQAGEAAGVENCEAGAGAAREKLAVVTAGLANATTRVGAGGA
ATATTATAVAAAASLSTGSPRHRKTARLSSTTQTPVGRAGLSFVASSSSS
SLSSTITPSTPPSAHQASPRFPLPSELWAQILSFFSLRELPVMTLLDLMG
INACTHLRKLDLSNRQTGGGGARVLMERLREGACPEMEQLDLTGFELGVT
GVEALGRAMHAGCLAARVRVLRLKRTGMGSRGMRLLAKAFGAGGGKRVEV
LDVEGNNADAGAMGLLVTALVGGACPRLRELVMGRNSVGDGVLARLAGGM
EGGMIGRLKVLRVAEAGVSTEGVRSLARALCVGGGGVLECLDLSDNHLYP
QGAEAMAVAVAQGAMPGLRRLVLSRNRIYGDGTAALMEALGQGQCPLLSV
LDLRGNKIGAKGAASVGGLLTAGTCPKLRELDVGGNYLYAEGVALLASAL
AQRPQPELRTLDVEDNAMTAEGAFLLSEAMRRGAVVGLEVLNLGRNGIGG
EGVGFVMAALAEGWCPRVRKLSLRSNELGVFGFAHVAACVQQGGMKRVES
LDVAVNGLGEEPGVVFLPIVMSSEWMPVLREVDMTFNGLEGDRARNQVGT
LQAGREGRKEGGVVVRLARKSAVPIFRRTQSAPAAIVVHHHHHQHHHHHH
QQQQQQQQQVQAVPPPPVQQQQQQQQHQQQPHAAFWEMIAAVGNNQGQP*
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Synonyms
Publications