NO19G00290.1, NO19G00290.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G00290.1
Unique NameNO19G00290.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1558
Alignment locationchr19:118291..120442 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:118291..120442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G00290.1 vs.
Match: XP_005852451.1 (hypothetical protein NGA_0680900 [Nannochloropsis gaditana CCMP526]; EKU23382.1 hypothetical protein NGA_0680900 [Nannochloropsis gaditana CCMP526]; EWM23517.1 conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 269.2 bits (687), Expect = 1.100e-68
Identity = 147/172 (85.47%), Postives = 155/172 (90.12%), Query Frame = 0 
Query:   58 MRSQPFLLPQLFLSLLLLPILAVHAFLPPPVLPS-PASYSTIKALSPGKPNLGKGGAVLQKPQLQTATRVGPPKNKEKTEQKFETKEEESEKFAVVLVGDKEYDQGHVVKVLCKVIAGLGAMKAVAAFQEAQSKGKAIVLICDEESAETVAELICRNKPPVIADVEPLRKGD 229
            MR  P LLP L   LL+   +  HAFLPPP+LPS P + ST+ ALSPGKPNLGKGGAVLQKPQLQTATRVGPPKNKEKTE++FETKEEESEKFAVVLVGDK+YDQGHVVKVLCKVIAGLGAMKAVAAFQEAQSKGKAIVLI DEESAETVAELICRNKPPVIADVEPLRKGD
Sbjct:    1 MRPHPLLLPFL---LLISSFVVSHAFLPPPLLPSSPITPSTVTALSPGKPNLGKGGAVLQKPQLQTATRVGPPKNKEKTEERFETKEEESEKFAVVLVGDKDYDQGHVVKVLCKVIAGLGAMKAVAAFQEAQSKGKAIVLIADEESAETVAELICRNKPPVIADVEPLRKGD 169
The following BLAST results are available for this feature:
BLAST of NO19G00290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852451.11.100e-6885.47hypothetical protein NGA_0680900 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G00290NO19G00290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G00290.1NO19G00290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G00290.1.cds1NO19G00290.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00290.1.cds2NO19G00290.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00290.1.cds3NO19G00290.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G00290.1 ID=NO19G00290.1|Name=NO19G00290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1558bp
CTTGCCCACACTTCCAAAACCTGTCAGGGTATACGTATGGATGTGGCGTG
GGAGTGTCTAGCAATGAATCGGACGCCGCGAGGCACTGTAAAATCCTTTT
ATTTCGAAAGCCCATGTGCGTATCGTGTATCGAACGAAGCAACACGGCGG
CGGTGCGTGACAAGGAAAGCTAGCGACGTCGTGTCGGTTTTTGCCGCGCC
TTCCCATGGACAAGGCGCTTTAGTGGTTTATGTGTATCTGATTATGGATT
ACTGGGCACATGACTTATCGCATGAACATAGCCAAAAAGCTGCCACAGCG
AAAAAGTACACGCAAAAGTCCGGGCCACAATGGGAAAATAAGGCACGCCT
CGTCACGAGGATCGAGCACGCCACAAGCTTGCGGCGAGGGTGGATGATGA
TCAGGGTTGGAAAAGGAGAGGATATGCGTCTCATTTTACACAGCGGCAGC
AAACCCCACACACACGTTCCAGGTGTAGAAGTCCTATGTCATATGGTAGA
TGTTTTCTTGAGTGTCCATCGTTGTCGTCTTTTTCTCAACCTTCGATTAT
AATGCTCACCGCTGCCCCTCCACCCCACACTCCTACAGCTGCAACAGCAA
CTCCACCTGTCCTCCCTGCCTGCTGCTCCTTCGGATCCTCCGGACGCCTT
CAAGCCATGCGATCACAACCCTTCCTTCTCCCCCAGCTCTTCCTCTCACT
CCTGCTGTTGCCCATCCTCGCCGTACATGCCTTTTTGCCACCCCCTGTCC
TCCCCTCCCCCGCCTCGTACTCCACCATCAAAGCCCTATCCCCCGGCAAG
CCCAACCTAGGAAAAGGCGGGGCCGTCCTTCAAAAACCTCAGCTCCAAAC
CGCCACACGCGTGGGTCCTCCCAAGAACAAAGAGAAGACTGAACAGAAAT
TCGAGACGAAGGAGGAGGAGAGTGAGAAGTTTGCTGTGGTGCTGGTGGGG
GACAAGGAGTACGACCAGGGACATGTGGTGAAGGTGCTGTGCAAGGTAAT
CGCGGGCCTCGGTGCCATGAAGGCCGTGGCTGCCTTCCAAGAGGCACAGA
GCAAGGGGAAGGCGATCGTGCTGATTTGTGACGAGGAGAGCGCGGAGACC
GTCGCTGAATTAATCTGTCGGAACAAGCCGCCGGTGATTGCGGATGTGGA
GCCCTTGAGAAAAGGCGATTAGTTGGATGCTTGATGGGGTCGTTGTCGTG
TCCGTGGGAAGAGGAGGCGATTGATTGATTGAAACCTTGCTGTTGGAGTA
TCTGCTCCTTTAAGGTAGGCGGTGGTTGGTCGAAAGGAGAAAGATTGGAA
AGGAAGAGGGAGAAGGAGAGATGAGGAGAGGGGAGGAGAGGAGGGAAAAC
GAAGGCGAAGAGAGGAGGAGAGAAGGAGGGAGAGGAGGAGGTCTTGATGG
GCCGCCATTATGGGGGGTGGGGGGCATGCATGATTGAGGCAAGGGTGTAA
GGAGGGAGAGGAGGTATCAGAAAAAGGGCAAGAAGACACGTACCCGCACA
TAAAGACGCACGCACACCGAGAAAAATAAATAAAAAGATGACGACCGACA
ACACACGG
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protein sequence of NO19G00290.1

>NO19G00290.1-protein ID=NO19G00290.1-protein|Name=NO19G00290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=229bp
MSYGRCFLECPSLSSFSQPSIIMLTAAPPPHTPTAATATPPVLPACCSFG
SSGRLQAMRSQPFLLPQLFLSLLLLPILAVHAFLPPPVLPSPASYSTIKA
LSPGKPNLGKGGAVLQKPQLQTATRVGPPKNKEKTEQKFETKEEESEKFA
VVLVGDKEYDQGHVVKVLCKVIAGLGAMKAVAAFQEAQSKGKAIVLICDE
ESAETVAELICRNKPPVIADVEPLRKGD*
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mRNA from alignment at chr19:118291..120442+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G00290.1 ID=NO19G00290.1|Name=NO19G00290.1|organism=Nannochloropsis oceanica|type=mRNA|length=2152bp|location=Sequence derived from alignment at chr19:118291..120442+ (Nannochloropsis oceanica)
CTTGCCCACACTTCCAAAACCTGTCAGGGTATACGTATGGATGTGGCGTG
GGAGTGTCTAGCAATGAATCGGACGCCGCGAGGCACTGTAAAATCCTTTT
ATTTCGAAAGCCCATGTGCGTATCGTGTATCGAACGAAGCAACACGGCGG
CGGTGCGTGACAAGGAAAGCTAGCGACGTCGTGTCGGTTTTTGCCGCGCC
TTCCCATGGACAAGGCGCTTTAGTGGTTTATGTGTATCTGATTATGGATT
ACTGGGCACATGACTTATCGCATGAACATAGCCAAAAAGCTGCCACAGCG
AAAAAGTACACGCAAAAGTCCGGGCCACAATGGGAAAATAAGGCACGCCT
CGTCACGAGGATCGAGCACGCCACAAGCTTGCGGCGAGGGTGGATGATGA
TCAGGGTTGGAAAAGGAGAGGATATGCGTCTCATTTTACACAGCGGCAGC
AAACCCCACACACACGTTCCAGGTGTAGAAGTCCTATGTCATATGGTAGA
TGTTTTCTTGAGTGTCCATCGTTGTCGTCTTTTTCTCAACCTTCGATTAT
AATGCTCACCGCTGCCCCTCCACCCCACACTCCTACAGCTGCAACAGCAA
CTCCACCTGTCCTCCCTGCCTGCTGCTCCTTCGGATCCTCCGGACGCCTT
CAAGCCATGCGATCACAACCCTTCCTTCTCCCCCAGCTCTTCCTCTCACT
CCTGCTGTTGCCCATCCTCGCCGTACATGCCTTTTTGCCACCCCCTGTCC
TCCCCTCCCCCGCCTCGTACTCCACCATCAAAGCCCTATCCCCCGGCAAG
CCCAACCTAGGTACGCGGATGGTGAACGAGAGAGAGAGAGAGCTCGTGAG
CAGATCCATTCCTTGTCTCTCATTCTCTCTATCTACCACTCAGGCGTGCT
TGGGACTCATTTGATCTAGTGCATCCATCTCATCTCCCATTCCCTGCTGC
CCTTGCCCTCCCTCCCCCACTCTCCCTCTCCTTCCCTTCCTTCCTTCCTC
TTTCCCCCACCAGGAAAAGGCGGGGCCGTCCTTCAAAAACCTCAGCTCCA
AACCGCCACACGCGTGGGTCCTCCCAAGAACAAAGAGAAGACTGAACAGA
AATTCGAGACGAAGGAGGAGGAGAGTGAGAAGTTTGCTGTGGTGCTGGTG
GGGGACAAGGAGTACGACCAGGGACATGTGGTGAAGGTAGGGAGGGAGGA
AGGCGCAGAGGAAGGGAGGGAGGGCAAGTTGTGCTATTATATAAAGAATA
CCGCGTCACAATATATGGAGAAGGGGGTAGGAAGGGAGGGTTGAATCGCG
GGAAGGAAGAGGGATGAGCACGAGTCAAGAGGGACATCGTTTAAAAGAGC
TTTGACGGCAAACGCCGAAGTTCTTTCTTGACATGTACAAGCGTCAAGGA
CTTGATCTGTTAATTTATCCCTCCATCTCTTTCTCCCTCCCTCTGTAGCT
CCTTCCACCTTCCCGTCCTCCCTCTTTTCAACCCCCTTTCGCCTTGTCCC
CGAGGGTGGTTCCCACAGGATCAAAAGAAGGAGCGTCCTCACCACTCCCT
CCCTCCCTCCTTCCTCCTTTCCCTCAGGTGCTGTGCAAGGTAATCGCGGG
CCTCGGTGCCATGAAGGCCGTGGCTGCCTTCCAAGAGGCACAGAGCAAGG
GGAAGGCGATCGTGCTGATTTGTGACGAGGAGAGCGCGGAGACCGTCGCT
GAATTAATCTGTCGGAACAAGCCGCCGGTGATTGCGGATGTGGAGCCCTT
GAGAAAAGGCGATTAGTTGGATGCTTGATGGGGTCGTTGTCGTGTCCGTG
GGAAGAGGAGGCGATTGATTGATTGAAACCTTGCTGTTGGAGTATCTGCT
CCTTTAAGGTAGGCGGTGGTTGGTCGAAAGGAGAAAGATTGGAAAGGAAG
AGGGAGAAGGAGAGATGAGGAGAGGGGAGGAGAGGAGGGAAAACGAAGGC
GAAGAGAGGAGGAGAGAAGGAGGGAGAGGAGGAGGTCTTGATGGGCCGCC
ATTATGGGGGGTGGGGGGCATGCATGATTGAGGCAAGGGTGTAAGGAGGG
AGAGGAGGTATCAGAAAAAGGGCAAGAAGACACGTACCCGCACATAAAGA
CGCACGCACACCGAGAAAAATAAATAAAAAGATGACGACCGACAACACAC
GG
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Coding sequence (CDS) from alignment at chr19:118291..120442+

>NO19G00290.1 ID=NO19G00290.1|Name=NO19G00290.1|organism=Nannochloropsis oceanica|type=CDS|length=687bp|location=Sequence derived from alignment at chr19:118291..120442+ (Nannochloropsis oceanica)
ATGTCATATGGTAGATGTTTTCTTGAGTGTCCATCGTTGTCGTCTTTTTC
TCAACCTTCGATTATAATGCTCACCGCTGCCCCTCCACCCCACACTCCTA
CAGCTGCAACAGCAACTCCACCTGTCCTCCCTGCCTGCTGCTCCTTCGGA
TCCTCCGGACGCCTTCAAGCCATGCGATCACAACCCTTCCTTCTCCCCCA
GCTCTTCCTCTCACTCCTGCTGTTGCCCATCCTCGCCGTACATGCCTTTT
TGCCACCCCCTGTCCTCCCCTCCCCCGCCTCGTACTCCACCATCAAAGCC
CTATCCCCCGGCAAGCCCAACCTAGGAAAAGGCGGGGCCGTCCTTCAAAA
ACCTCAGCTCCAAACCGCCACACGCGTGGGTCCTCCCAAGAACAAAGAGA
AGACTGAACAGAAATTCGAGACGAAGGAGGAGGAGAGTGAGAAGTTTGCT
GTGGTGCTGGTGGGGGACAAGGAGTACGACCAGGGACATGTGGTGAAGGT
GCTGTGCAAGGTAATCGCGGGCCTCGGTGCCATGAAGGCCGTGGCTGCCT
TCCAAGAGGCACAGAGCAAGGGGAAGGCGATCGTGCTGATTTGTGACGAG
GAGAGCGCGGAGACCGTCGCTGAATTAATCTGTCGGAACAAGCCGCCGGT
GATTGCGGATGTGGAGCCCTTGAGAAAAGGCGATTAG
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Synonyms
Publications