NO19G00290, NO19G00290 (gene) Nannochloropsis oceanica

Overview
NameNO19G00290
Unique NameNO19G00290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2152
Alignment locationchr19:118291..120442 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:118291..120442 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0030163protein catabolic process
GO:0019538protein metabolic process
GO:0009056catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR014719Ribosomal_L7/12_C/ClpS-like
IPR003769ClpS_core
Homology
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BLAST of NO19G00290 vs. NCBI_GenBank
Match: XP_005852451.1 (hypothetical protein NGA_0680900 [Nannochloropsis gaditana CCMP526] >EKU23382.1 hypothetical protein NGA_0680900 [Nannochloropsis gaditana CCMP526] >EWM23517.1 conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 269.2 bits (687), Expect = 1.100e-68
Identity = 147/172 (85.47%), Postives = 155/172 (90.12%), Query Frame = 0 
Query:   58 MRSQPFLLPQLFLSLLLLPILAVHAFLPPPVLP-SPASYSTIKALSPGKPNLGKGGAVLQKPQLQTATRVGPPKNKEKTEQKFETKEEESEKFAVVLVGDKEYDQGHVVKVLCKVIAGLGAMKAVAAFQEAQSKGKAIVLICDEESAETVAELICRNKPPVIADVEPLRKGD 229
            MR  P LLP L   LL+   +  HAFLPPP+LP SP + ST+ ALSPGKPNLGKGGAVLQKPQLQTATRVGPPKNKEKTE++FETKEEESEKFAVVLVGDK+YDQGHVVKVLCKVIAGLGAMKAVAAFQEAQSKGKAIVLI DEESAETVAELICRNKPPVIADVEPLRKGD
Sbjct:    1 MRPHPLLLPFL---LLISSFVVSHAFLPPPLLPSSPITPSTVTALSPGKPNLGKGGAVLQKPQLQTATRVGPPKNKEKTEERFETKEEESEKFAVVLVGDKDYDQGHVVKVLCKVIAGLGAMKAVAAFQEAQSKGKAIVLIADEESAETVAELICRNKPPVIADVEPLRKGD 169
The following BLAST results are available for this feature:
BLAST of NO19G00290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852451.11.100e-6885.47hypothetical protein NGA_0680900 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR055ncniR055Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G00290.1NO19G00290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607069gene_9758Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101003g2gene6934Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G00290.1NO19G00290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G00290 ID=NO19G00290|Name=NO19G00290|organism=Nannochloropsis oceanica|type=gene|length=2152bp
CTTGCCCACACTTCCAAAACCTGTCAGGGTATACGTATGGATGTGGCGTG
GGAGTGTCTAGCAATGAATCGGACGCCGCGAGGCACTGTAAAATCCTTTT
ATTTCGAAAGCCCATGTGCGTATCGTGTATCGAACGAAGCAACACGGCGG
CGGTGCGTGACAAGGAAAGCTAGCGACGTCGTGTCGGTTTTTGCCGCGCC
TTCCCATGGACAAGGCGCTTTAGTGGTTTATGTGTATCTGATTATGGATT
ACTGGGCACATGACTTATCGCATGAACATAGCCAAAAAGCTGCCACAGCG
AAAAAGTACACGCAAAAGTCCGGGCCACAATGGGAAAATAAGGCACGCCT
CGTCACGAGGATCGAGCACGCCACAAGCTTGCGGCGAGGGTGGATGATGA
TCAGGGTTGGAAAAGGAGAGGATATGCGTCTCATTTTACACAGCGGCAGC
AAACCCCACACACACGTTCCAGGTGTAGAAGTCCTATGTCATATGGTAGA
TGTTTTCTTGAGTGTCCATCGTTGTCGTCTTTTTCTCAACCTTCGATTAT
AATGCTCACCGCTGCCCCTCCACCCCACACTCCTACAGCTGCAACAGCAA
CTCCACCTGTCCTCCCTGCCTGCTGCTCCTTCGGATCCTCCGGACGCCTT
CAAGCCATGCGATCACAACCCTTCCTTCTCCCCCAGCTCTTCCTCTCACT
CCTGCTGTTGCCCATCCTCGCCGTACATGCCTTTTTGCCACCCCCTGTCC
TCCCCTCCCCCGCCTCGTACTCCACCATCAAAGCCCTATCCCCCGGCAAG
CCCAACCTAGgtacgcggatggtgaacgagagagagagagagctcgtgag
cagatccattccttgtctctcattctctctatctaccactcaggcgtgct
tgggactcatttgatctagtgcatccatctcatctcccattccctgctgc
ccttgccctccctcccccactctccctctccttcccttccttccttcctc
tttcccccaccagGAAAAGGCGGGGCCGTCCTTCAAAAACCTCAGCTCCA
AACCGCCACACGCGTGGGTCCTCCCAAGAACAAAGAGAAGACTGAACAGA
AATTCGAGACGAAGGAGGAGGAGAGTGAGAAGTTTGCTGTGGTGCTGGTG
GGGGACAAGGAGTACGACCAGGGACATGTGGTGAAGgtagggagggagga
aggcgcagaggaagggagggagggcaagttgtgctattatataaagaata
ccgcgtcacaatatatggagaagggggtaggaagggagggttgaatcgcg
ggaaggaagagggatgagcacgagtcaagagggacatcgtttaaaagagc
tttgacggcaaacgccgaagttctttcttgacatgtacaagcgtcaagga
cttgatctgttaatttatccctccatctctttctccctccctctgtagct
ccttccaccttcccgtcctccctcttttcaaccccctttcgccttgtccc
cgagggtggttcccacaggatcaaaagaaggagcgtcctcaccactccct
ccctccctccttcctcctttccctcagGTGCTGTGCAAGGTAATCGCGGG
CCTCGGTGCCATGAAGGCCGTGGCTGCCTTCCAAGAGGCACAGAGCAAGG
GGAAGGCGATCGTGCTGATTTGTGACGAGGAGAGCGCGGAGACCGTCGCT
GAATTAATCTGTCGGAACAAGCCGCCGGTGATTGCGGATGTGGAGCCCTT
GAGAAAAGGCGATTAGTTGGATGCTTGATGGGGTCGTTGTCGTGTCCGTG
GGAAGAGGAGGCGATTGATTGATTGAAACCTTGCTGTTGGAGTATCTGCT
CCTTTAAGGTAGGCGGTGGTTGGTCGAAAGGAGAAAGATTGGAAAGGAAG
AGGGAGAAGGAGAGATGAGGAGAGGGGAGGAGAGGAGGGAAAACGAAGGC
GAAGAGAGGAGGAGAGAAGGAGGGAGAGGAGGAGGTCTTGATGGGCCGCC
ATTATGGGGGGTGGGGGGCATGCATGATTGAGGCAAGGGTGTAAGGAGGG
AGAGGAGGTATCAGAAAAAGGGCAAGAAGACACGTACCCGCACATAAAGA
CGCACGCACACCGAGAAAAATAAATAAAAAGATGACGACCGACAACACAC
GG
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protein sequence of NO19G00290.1

>NO19G00290.1-protein ID=NO19G00290.1-protein|Name=NO19G00290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=229bp
MSYGRCFLECPSLSSFSQPSIIMLTAAPPPHTPTAATATPPVLPACCSFG
SSGRLQAMRSQPFLLPQLFLSLLLLPILAVHAFLPPPVLPSPASYSTIKA
LSPGKPNLGKGGAVLQKPQLQTATRVGPPKNKEKTEQKFETKEEESEKFA
VVLVGDKEYDQGHVVKVLCKVIAGLGAMKAVAAFQEAQSKGKAIVLICDE
ESAETVAELICRNKPPVIADVEPLRKGD*
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Synonyms
Publications