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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr19 | genome | chr19:76495..80638 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO19G00200.1 vs.
Match: CCI39789.1 (unnamed protein product [Albugo candida]) HSP 1 Score: 164.5 bits (415), Expect = 8.700e-37 Identity = 123/359 (34.26%), Postives = 191/359 (53.20%), Query Frame = 0
Query: 129 TATEILAAKIDPR---RNRPNTD--KLFDVVNFLQRVPEHRPVSADELLKEIGVDLRPDGGLDTCVNELLEGHPKVRVVPDRPGWFQYQAKYEIKNRGQLLAWLTRYNQGLAEADVKDTYLGVTHDLREMVRAGEVIAVKD-DGGRPVYFPRGRPFLVSLSGVGQRLRRVEGEDGSGQVSTTKDLRCEIRRGEGVRVAGEWFRVNTLESRKVQRLRAEPPLSISSGAGRRKWPPPD-YTEERVGYKEPFSLQDGLPLDHAPRMRHEQQHGREEGKNEDDGQALP-------LVRHGCTVDVRDLLWAATRQHVPTDEKELRARLQEAALGAHHAGPRRPKMSAATLKSQANKRKKQDKE 474
+AT ++ K P+ N P D K+++++ +L++VP H+PVS ++ + GVDL G+D V+ L+ +PKVRVV DR + YQAKY+IKN+ QLL L R +G+ D+ D Y+ V DL+ + R+GEVI VK + G V++PR FLV +SGV E GS ++++D+ EIRRG+ +++ WFRV S V+ A P S + + D T ++V Y F +D +P+D AP + D ALP + +HGCT D+R+ LW T ++ PTD E +L +A L + K+ A+ + Q+ +R K+DK+
Sbjct: 16 SATTVIPIKEAPQIDISNVPKNDGAKVYNILEYLRKVPMHQPVSIKDIFQHTGVDL----GVDDQVDHRLKNNPKVRVVGDR---YAYQAKYDIKNKTQLLKMLDRTPEGIPTEDLMDCYVDVERDLQALARSGEVICVKHAEKGAEVFYPRDMSFLVDVSGV------ATVEPGSYITNSSQDVTNEIRRGDAIKIGNHWFRV----SGAVKTSSASRPAPFSGMSSKSVSSVRDPNTSKKVRYLFKFD-KDHMPID-AP----FPDASNNTAASMDRWDALPRRGPKFQMTKHGCTNDIRE-LWQNTMRNFPTDRNEFYKKLVQAGL------TTQSKVDAS--RRQSKRRLKEDKK 342
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO19G00200.1 ID=NO19G00200.1|Name=NO19G00200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1775bp GAACAAGTTAAGTCACGGCGCACCAACCCGGAAGACTTTTCATGAAGGCC GCACGCAAACACATTATTATTCTCAAGCCACAGAGACGACTCCCACCACA AGGCTTCACCAGTACCAGCAGAAGCACCTGCAGTAGCTATCGAAAGCTCT TATCCGGGCTTCGTGCCGCACAGACTTCGCCAACACTTGCTTTATTTTCT CTTTCTCCTCCCCCCTTACTCCCCCTTTCACAACACTACCTACAGAGGCA GTGTCCAATGGCGGACCCGCGGGAAAAGATCTCGTATGGCTTCCAGTTCC TCTCTCAGGTCGAGGAAAAGGGCCCAGGCAAGGTAGCAGGTGGAGCAGGA GGTGCCGGCGTACAAGGTCAACAACAACAGCAGCAGCAGCAGCAGCAAGC ACCCTCTCCCCCTGTGCCTCGACGAACGGCGACAGAAATTCTAGCAGCGA AAATTGACCCCCGTCGCAACCGTCCGAACACAGACAAGCTGTTCGACGTG GTCAATTTTCTGCAGCGCGTGCCCGAGCATCGACCGGTGTCGGCAGACGA GCTCCTGAAGGAAATTGGCGTCGACCTGCGGCCAGACGGAGGGCTGGACA CATGCGTGAATGAACTGCTGGAAGGCCATCCCAAGGTCCGCGTGGTTCCC GATAGGCCGGGGTGGTTTCAGTATCAAGCCAAGTACGAGATCAAGAACCG AGGACAGCTCCTTGCCTGGCTCACGCGTTACAACCAGGGCCTTGCCGAGG CTGATGTGAAAGATACCTACCTCGGCGTCACCCACGACCTACGAGAGATG GTGCGAGCCGGAGAGGTGATAGCAGTGAAGGATGACGGTGGTCGCCCCGT CTACTTCCCTCGAGGGAGGCCCTTCCTCGTGTCTCTCTCCGGCGTCGGGC AAAGGCTGCGGCGGGTGGAGGGGGAGGACGGAAGCGGGCAGGTCAGCACT ACCAAGGACTTACGGTGTGAGATCCGACGAGGGGAGGGAGTGCGCGTGGC CGGGGAGTGGTTTCGGGTCAACACCCTCGAAAGCCGCAAGGTGCAGCGCC TACGGGCGGAGCCCCCTCTTTCGATTTCTTCGGGAGCCGGTCGTCGCAAA TGGCCACCACCCGATTACACGGAGGAGAGAGTTGGCTACAAAGAGCCTTT CTCCCTGCAGGACGGCCTGCCCCTCGACCACGCCCCCCGCATGAGGCACG AGCAGCAACACGGGCGGGAGGAGGGCAAGAACGAGGACGACGGACAGGCC CTGCCCCTGGTCCGACACGGGTGCACCGTCGACGTGCGGGACTTGCTCTG GGCTGCGACGAGGCAACACGTCCCCACCGACGAGAAGGAGCTTCGAGCCC GCTTGCAGGAGGCGGCCTTGGGAGCTCACCACGCCGGTCCTCGTCGGCCA AAAATGAGTGCCGCTACCCTCAAGAGCCAGGCCAACAAGAGGAAAAAACA GGACAAGGAGGCGGCGTGGCGGGACGACATCCGAGCCAAGGCCGCGGCCA TTCAAGCCATGCAGCAACAGGCCAAGAAGAAGATCAAAAAGTAGGAATGG GGTGGAGCACGAGGGAGGAAAGTAGGAACAGAGGGAGGGAGGAAAGGAAG GAGGGGGTTGAAATCGTGTTGCAGTAGCCTGGTTAGGCACAGCAAAGGTC GAAAATAAAGATGGGAGAGGACCATGTAGTGTAAATATGATAGCCAGGAC GCATATGAAGGTCATGTTTATGTCATGTACCACATAAGAGACGAAGAAAA AGTAAAAAGACAAACGATGCGGATG back to topprotein sequence of NO19G00200.1 >NO19G00200.1-protein ID=NO19G00200.1-protein|Name=NO19G00200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=501bp MKAARKHIIILKPQRRLPPQGFTSTSRSTCSSYRKLLSGLRAAQTSPTLA LFSLSPPPLLPLSQHYLQRQCPMADPREKISYGFQFLSQVEEKGPGKVAG GAGGAGVQGQQQQQQQQQQAPSPPVPRRTATEILAAKIDPRRNRPNTDKL FDVVNFLQRVPEHRPVSADELLKEIGVDLRPDGGLDTCVNELLEGHPKVR VVPDRPGWFQYQAKYEIKNRGQLLAWLTRYNQGLAEADVKDTYLGVTHDL REMVRAGEVIAVKDDGGRPVYFPRGRPFLVSLSGVGQRLRRVEGEDGSGQ VSTTKDLRCEIRRGEGVRVAGEWFRVNTLESRKVQRLRAEPPLSISSGAG RRKWPPPDYTEERVGYKEPFSLQDGLPLDHAPRMRHEQQHGREEGKNEDD GQALPLVRHGCTVDVRDLLWAATRQHVPTDEKELRARLQEAALGAHHAGP RRPKMSAATLKSQANKRKKQDKEAAWRDDIRAKAAAIQAMQQQAKKKIKK * back to topmRNA from alignment at chr19:76495..80638- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO19G00200.1 ID=NO19G00200.1|Name=NO19G00200.1|organism=Nannochloropsis oceanica|type=mRNA|length=4144bp|location=Sequence derived from alignment at chr19:76495..80638- (Nannochloropsis oceanica) GAACAAGTTAAGTCACGGCGCACCAACCCGGAAGACTTTTCATGAAGGCC
GCACGCAAACACATTATTATTCTCAAGCCACAGAGACGACTCCCACCACA
AGGCTTCACCAGTACCAGCAGAAGCACCTGCAGTAGCTATCGAAAGCTCT
TATCCGGGCTTCGTGCCGCACAGACTTCGCCAACACTTGCTTTATTTTCT
CTTTCTCCTCCCCCCTTACTCCCCCTTTCACAACACTACCTACAGAGGCA
GTGTCCAATGGCGGACCCGCGGGAAAAGATCTCGTATGGCTTCCAGTTCC
TCTCTCAGGTCGAGGAAAAGGGCCCAGGCAAGGTAGCAGGTGGAGCAGGA
GGTGCCGGCGTACAAGGTCAACAACAACAGCAGCAGCAGCAGCAGCAAGC
ACCCTCTCCCCCTGTGCCTCGACGAACGGCGACAGAAATTCTAGCAGCGA
AGTATGTACAGGGTAGTTAGATGGAGGAGGAGAGGATATAGGTAGATTGA
GAGAGGCTTGCCTGTACCCATGAGTCCTATTATCGCGTGCGTCTTATCGC
TTACCAACACATCCCTTCCTCCCTGCCCTCCCTCCCTCCCTCCAACCCCG
CTTCCATCGTTCCACTCCTTTTTTCAACTTCCTCGACGAAGAATTGACCC
CCGTCGCAACCGTCCGAACACAGACAAGCTGTTCGACGTGGTCAATTTTC
TGCAGCGCGTGCCCGAGCATCGACCGGTGTGCGAGGCGGGGAGAGGGAGG
GGGAGGGAGAGAGGGAAAGAGGGCAAGTAGAGGCAGGGCGGGTGGAGTGT
AAATGTTTGCCTCTGCAGTCCATTTCGACCGCAGCGTGCCGAGAGAGGGG
AGAGGAATTTACGATTCCCATCTGATTATATTCCCCTCCTCTCCCTCCGT
TCCTCCCTCCGTCCCTACCTCCCTCCCTCCCAGGTGTCGGCAGACGAGCT
CCTGAAGGAAATTGGCGTCGACCTGCGGCCAGACGGAGGGCTGGACACAT
GCGTGAATGAACTGCTGGAAGGCCATCCCAAGGTAACGAGGGAGGAAGGG
AGGGAGGAGGGGGGGAGAGGATGATGAACCCTAGAAAGTTTCGAGGAAAA
CAAAGGCCGCGCAAACGCTTTTCTTTTTCTCTTCTCCTCTTTCCCTCCCT
CCTTCCCTTTCTAGGTCCGCGTGGTTCCCGATAGGCCGGGGTGGTTTCAG
TATCAAGCCAAGTACGAGATCAAGAACCGAGGACAGCTCCTTGCCTGGCT
CACGCGTTACAACCAGGTACCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCGGCTGGGCCTCCCTCTCTTCCTTTGGGCCTTCTTGAAGTA
CATCATTCATGACCGAAACGATTCTTCTCCTGACCCCTCCCTCCCTCCCT
CCCTCCCTTTCACCCTCCCTCTCACCCTCAGGGCCTTGCCGAGGCTGATG
TGAAAGATACCTACCTCGGCGTCACCCACGACCTACGAGAGATGGTGCGA
GCCGGAGAGGTGATAGCAGTGAAGGTATGTACGTTCCTTGCCCTCCCTCC
CTCCCTCCTTCCCTCCCTTCCTACCTCCCATCGTCTGTTGCTTTTTCACT
TTCCCTCCCTCCTACCCTCCCTCCCCCCTTCCCTCCTTTCGACGCCCCTC
TCACGAATGGCACCCCCCCAAGGCCCTCAGGGCATGCGATGTTCATTATC
CCTCCCTCCCTCCCTCTCCAGGATGACGGTGGTCGCCCCGTCTACTTCCC
TCGAGGGAGGCCCTTCCTCGTGTCTCTCTCCGGCGTCGGGCAAAGGCTGC
GGCGGGTGGAGGGGGAGGACGGAAGCGGGCAGGTCAGCACTACCAAGGGT
AAGGAGGGAGGGAGGGAGGGAGGGAGAGAGGGAGGGAGGGAGGGAGGGAG
GGAATGCAAGTGGCTGCGTGGCCGACCCAGGATCTACTCACTCACTCACC
CACCCACTCACTCACTTACTCACTTACTCACGTATCGACAGACTTACGGT
GTGAGATCCGATGAGGAGAGTCACGCTCCAACTCACTCACTTACTCACTC
ACACACGTACATTCAGACTTACGGTGTGAGATCCGACGAGGAGAGTCACG
CTCCAACTCACTCACTTACTCACTCACACACGTACATACAGACTTACGGT
GTGAGATCCGACGAGGAGAGTCACGCTCCAACTCACTCACTTACTCACTC
ACACACGTACACACAGACTTACGGTGTGAGATCCGACGAGGGGAGGGAGT
GCGCGTGGCCGGGGAGTGGTTTCGGGTCAACACCCTCGAAAGCCGGTAAG
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCT
CCTCCTTTCCACTCCTCGTTGACTGATCCTCTCCCTGCGGTTACCCGTCC
TGTTCCCTTCCCTCCTCTACGCTCCCAAATACGACGCCTGGAAGCTGGTC
ATTCTCTCTACTTATCTTTTTTCATTCCTCCCTCCCTCCCCCCCTCCCTC
CCTCCTTCCCTCTTACAGCAAGGTGCAGCGCCTACGGGCGGAGCCCCCTC
TTTCGATTTCTTCGGGAGCCGGTCGTCGCAAATGGCCACCACCCGATTAC
ACGGTAGGTAGGTAGGTAGGGAGGGAGGGAGGGAGGGAGTTAAGATGAAG
AATCTGTGCGGGGGGAAAGGAAGAATGACATGACATGAAGAGAAAGAAGA
GAAGATGGAGAAGAGGGAGAAAGAAGAGGAGGAAGAAGAATGGGAGGGGG
AATAGAGGGCAGTAGAGGAGGCAAGTTGGTTTTGTTCGGAGGCCTTTCTG
TCTTTCCCAGCGTGTCGGTCATGTGCATCATTTGTTGATGACAACCTATT
CACGTATCCTACCCGGAACCCGGAAGGAGGAGAGAGTTGGCTACAAAGAG
CCTTTCTCCCTGCAGGACGGCCTGCCCCTCGACCACGCCCCCCGCATGAG
GCACGAGCAGCAACACGGGCGGGAGGAGGGCAAGAACGAGGACGACGGAC
AGGGTGCGTGTGCTAGCCTATCTGTGCGCGAGTGTGTTTGACTGCCCCTC
CCCTTCATCTCGGCCGATCTCTCTTCCTCCCCTTCATTATTCGACCAGGG
ACTCGACGAGCTCTTAAGGAACCGTCTCCTTCTGCCCTCACCCACAATTT
CCTCCCCCCTCTTTCCCTTTCTCCCTCCCTCCCTCCCTTCCTCCCTCCCT
CCTTCCCTCCCTCCCTCCAGCCCTGCCCCTGGTCCGACACGGGTGCACCG
TCGACGTGCGGGACTTGCTCTGGGCTGCGACGAGGCAACACGTCCCCACC
GACGAGAAGGAGCTTCGAGCCCGCTTGCAGGAGGCGGCCTTGGGAGTAAG
AGGGGAGGGAGGAAAAGGAGGCGGGAGCGAGGGGTAATAGAAAGTGGGCG
AGGTACTCGCAGGACAAACCGTTCGATTCGAAAAACAGTATTTGCAAGTC
AGGCTCACGTGCTTGCTGTTCCGTCCGTCTCTTCCCCCCCTCCCTCCCTC
CCTCTTTCCCTCCCTCCCATTAGGCTCACCACGCCGGTCCTCGTCGGCCA
AAAATGAGTGCCGCTACCCTCAAGAGCCAGGCCAACAAGAGGAAAAAACA
GGTGCGTTAATGCCTGGTGGTAGATGCGCAGATCTACCATTTCCCTCTCT
TTTCCAAACTCTTTTACTTATCACTTCGGCAACCAGGAAGAGAGGACGAT
AAGAATCTGGTTGCGTGTTCATGGATACCCCCCTTCTCTCATCTACCCCT
CCACTTCCTTCCCTCCCTCCATCCCTTCCTTCTTCCCTCCCTCCAACCCT
CCCTCCACCTCCCTCTTCAGGACAAGGAGGCGGCGTGGCGGGACGACATC
CGAGCCAAGGCCGCGGCCATTCAAGCCATGCAGCAACAGGCCAAGAAGAA
GATCAAAAAGTAGGAATGGGGTGGAGCACGAGGGAGGAAAGTAGGAACAG
AGGGAGGGAGGAAAGGAAGGAGGGGGTTGAAATCGTGTTGCAGTAGCCTG
GTTAGGCACAGCAAAGGTCGAAAATAAAGATGGGAGAGGACCATGTAGTG
TAAATATGATAGCCAGGACGCATATGAAGGTCATGTTTATGTCATGTACC
ACATAAGAGACGAAGAAAAAGTAAAAAGACAAACGATGCGGATG back to topCoding sequence (CDS) from alignment at chr19:76495..80638- >NO19G00200.1 ID=NO19G00200.1|Name=NO19G00200.1|organism=Nannochloropsis oceanica|type=CDS|length=1503bp|location=Sequence derived from alignment at chr19:76495..80638- (Nannochloropsis oceanica) ATGAAGGCCGCACGCAAACACATTATTATTCTCAAGCCACAGAGACGACT CCCACCACAAGGCTTCACCAGTACCAGCAGAAGCACCTGCAGTAGCTATC GAAAGCTCTTATCCGGGCTTCGTGCCGCACAGACTTCGCCAACACTTGCT TTATTTTCTCTTTCTCCTCCCCCCTTACTCCCCCTTTCACAACACTACCT ACAGAGGCAGTGTCCAATGGCGGACCCGCGGGAAAAGATCTCGTATGGCT TCCAGTTCCTCTCTCAGGTCGAGGAAAAGGGCCCAGGCAAGGTAGCAGGT GGAGCAGGAGGTGCCGGCGTACAAGGTCAACAACAACAGCAGCAGCAGCA GCAGCAAGCACCCTCTCCCCCTGTGCCTCGACGAACGGCGACAGAAATTC TAGCAGCGAAAATTGACCCCCGTCGCAACCGTCCGAACACAGACAAGCTG TTCGACGTGGTCAATTTTCTGCAGCGCGTGCCCGAGCATCGACCGGTGTC GGCAGACGAGCTCCTGAAGGAAATTGGCGTCGACCTGCGGCCAGACGGAG GGCTGGACACATGCGTGAATGAACTGCTGGAAGGCCATCCCAAGGTCCGC GTGGTTCCCGATAGGCCGGGGTGGTTTCAGTATCAAGCCAAGTACGAGAT CAAGAACCGAGGACAGCTCCTTGCCTGGCTCACGCGTTACAACCAGGGCC TTGCCGAGGCTGATGTGAAAGATACCTACCTCGGCGTCACCCACGACCTA CGAGAGATGGTGCGAGCCGGAGAGGTGATAGCAGTGAAGGATGACGGTGG TCGCCCCGTCTACTTCCCTCGAGGGAGGCCCTTCCTCGTGTCTCTCTCCG GCGTCGGGCAAAGGCTGCGGCGGGTGGAGGGGGAGGACGGAAGCGGGCAG GTCAGCACTACCAAGGACTTACGGTGTGAGATCCGACGAGGGGAGGGAGT GCGCGTGGCCGGGGAGTGGTTTCGGGTCAACACCCTCGAAAGCCGCAAGG TGCAGCGCCTACGGGCGGAGCCCCCTCTTTCGATTTCTTCGGGAGCCGGT CGTCGCAAATGGCCACCACCCGATTACACGGAGGAGAGAGTTGGCTACAA AGAGCCTTTCTCCCTGCAGGACGGCCTGCCCCTCGACCACGCCCCCCGCA TGAGGCACGAGCAGCAACACGGGCGGGAGGAGGGCAAGAACGAGGACGAC GGACAGGCCCTGCCCCTGGTCCGACACGGGTGCACCGTCGACGTGCGGGA CTTGCTCTGGGCTGCGACGAGGCAACACGTCCCCACCGACGAGAAGGAGC TTCGAGCCCGCTTGCAGGAGGCGGCCTTGGGAGCTCACCACGCCGGTCCT CGTCGGCCAAAAATGAGTGCCGCTACCCTCAAGAGCCAGGCCAACAAGAG GAAAAAACAGGACAAGGAGGCGGCGTGGCGGGACGACATCCGAGCCAAGG CCGCGGCCATTCAAGCCATGCAGCAACAGGCCAAGAAGAAGATCAAAAAG TAG back to top
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