NO18G02680, NO18G02680 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO18G02680 vs. NCBI_GenBank
Match: EWM23477.1 (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana]) HSP 1 Score: 285.8 bits (730), Expect = 4.900e-73 Identity = 192/490 (39.18%), Postives = 251/490 (51.22%), Query Frame = 0
Query: 18 LASSSKGMSCEKCYVSKSKCDFSFPCERCFRLNLPCRPRVRGGGLVLGRKRRR---KEVMAIEEQTKHQHLPNGLLQGVECMGGPGS-----------------TSTXXXXXXXXXXXXXXXXXXXXXXXTQAITW---TNCGRQVSKRHAANSPVGMKSSSKKSKKGSNVKRED----TPPSLVDLVFERVNGAQMSETYVQAFNTLQQRGHINREGMLALLRQAKRLSDVCGSDVTLGAAGIIAKALRVTPQELMVEEDEGEGCSNISSAAYIS-----------------------ERARRQRMAEEVRTEEAAAARLKASPLFQQRDDGRTAMVVIEMNRAKARMVAVGNQAYLDVFPSPSHLLSQEMSRRCWSPFLFAALVAHGDREAWFRVNMEALCSAPPREMEEGGGRER---QKERQLYSEFVKTFSREGQVLLYWARLAQVEAGGXXXXXXXXXXXXXXXXXLRMDLVPPSRHITDRPEK 455
L +SSK SC+KCY SKSKCDFS PCERCFRLNLPCRPRVRG KR R K + E P + + +GGPG TST + W R +R P G +S K ++ +E+ SL++ + ERV+ ++M+E ++ AF+ +Q+RG ++REGM+ +LR K+LSD+ G D+TLG IAKA V EL + SSA +S + R + EE+ EA AARLKAS LF++RDDG T +++IE++R + R++ NQAYLDVF P LLS+ ++R C PFLFAA VAH DR+ WFR+N+EALCS PR EGG +ER LYSEF+K FSR+G V LYWARLAQ+EA L M+ VP SR+ITDRPEK
Sbjct: 10 LGTSSKNKSCQKCYDSKSKCDFSLPCERCFRLNLPCRPRVRGSMTHSASKRTRGCSKSALGDEATGSPCWPPQ---ESLPRLGGPGKAPRVGQEGRQWAGRDSYTSTEAASEDGEEDEGEGCQPEGSNAYRRDCAWGLLLERARYDFQRSMGTQPSGEESPIKAQPSRASASKEEENDGDGQSLLETILERVDRSRMAEEFLDAFHAVQRRGTVHREGMVGMLRHWKKLSDLSGQDLTLGVGAAIAKAFHVEQWELRYRRRNKVFNRSESSAGNVSLGSTPTSNSSQGQLSSKRFLTAVKEGPRGLLLEELMAVEAGAARLKASSLFRERDDGYTGLLLIEVDRTEDRVIVASNQAYLDVFLGPGFLLSEGLARGCLDPFLFAAFVAHSDRDTWFRMNLEALCS--PRFRPEGGSSREGVPPRERLLYSEFLKIFSRDGHVRLYWARLAQLEA------TTREGEEEKLHFLLWMEPVPASRYITDRPEK 488
BLAST of NO18G02680 vs. NCBI_GenBank
Match: EWM20491.1 (hypothetical protein Naga_100382g3 [Nannochloropsis gaditana]) HSP 1 Score: 225.7 bits (574), Expect = 6.000e-55 Identity = 137/308 (44.48%), Postives = 183/308 (59.42%), Query Frame = 0
Query: 173 SLVDLVFERVNGAQMSETYVQAFNTLQQRGHINREGMLALLRQAKRLSDVCGSDVTLGAAGIIAKALRVTPQELMV---------EEDEGEGC-----------SNISSAAY---ISERARRQRMAEEVRTEEAAAARLKASPLFQQRDDGRTAMVVIEMNRAKARMVAVGNQAYLDVFPSPSHLLSQEMSRRCWSPFLFAALVAHGDREAWFRVNMEALCSAPPREMEEGGGRE---RQKERQLYSEFVKTFSREGQVLLYWARLAQVEAGGXXXXXXXXXXXXXXXXXLRMDLVPPSRHITDRPEK 455
SL+ + ERV+ +M+E ++ AF+ +Q+RG I+REGM+ +LR K+LSD+ G D+TLG IA AL+V EL E G+ +SS + + E + EE+ EA AARLKASPLF++RDDG T +++IE++R + R++ NQAYLDVF P LLS+ ++R C PFLFAA VAH DR+ WFR+N+EALCS PR E G R ++ER LYSEF+K FSR+G V LYWARLAQ+E L M+ VP SR+ITDRPEK
Sbjct: 33 SLLGTILERVDRPRMAEQFLDAFHAVQRRGKIHREGMVGMLRHWKKLSDLAGEDLTLGIGAAIANALKVEAWELQYRGGDTVKRSESWTGDSSLGIIHTPNSFQGRLSSKRFPTTVEEGPMGLLLEEELAAVEAGAARLKASPLFRERDDGYTGLLLIEVDRTEDRVIVASNQAYLDVFLGPGFLLSEGLARGCLEPFLFAAFVAHSDRDTWFRMNLEALCS--PRFRPERGRRRDGVPRRERLLYSEFLKIFSRDGHVRLYWARLAQLEVS------MREGEEEKMHFLLWMEPVPASRYITDRPEK 332
BLAST of NO18G02680 vs. NCBI_GenBank
Match: EWM20744.1 (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana]) HSP 1 Score: 76.3 bits (186), Expect = 5.900e-10 Identity = 108/440 (24.55%), Postives = 158/440 (35.91%), Query Frame = 0
Query: 16 RALASSSKGMSCEKCYVSKSKCDFSFPCERCFRLNLPCRPRVRGGGLVLGRKRRRKEVMAIEEQTKHQHLPNGLLQGVECMGGPGSTSTXXXXXXXXXXXXXXXXXXXXXXXTQAITWTNCGRQVSKRHAANSPVGMKSSSKKSKKGSNVKREDTPPSLVDLVFERVNGAQMSETYVQAFNTLQQRGHINREGMLALLRQAKRLSDVCGSDV--TLGAAGIIAKALRVTPQELMVEEDEGEGCSNISSAAYISERARRQRMAEEVRTEEAAAARLKASPLFQQRDDGRTAMVVIEMNRAKARMVAVGNQAYLDVFPSPSHLLSQEMSRRCWSPFLFAALVAHGDREAWFRVNMEALCSAPPREMEEGGGRERQKERQLYSEFVKTFSREGQVLLYWARLAQVEAGGXXXXXXXXXXXXXXXXXLRMDLVPPSRHITDRPE 454
RA S+ SC CY+ K+ CD +FPC RCFR N PCRP +T T Q S+R PV SSS + S +DLV ER + M Y+QAF L Q G +NR+ + LL+ L + D T GA + A ++ EL E C + + A+ V E A L+ + + +Q ++ A+ + M+ K + V + N+A+ F SP+ + RRC FLFAA VA DR A+F++ A S + + F+K F R+G++ LY + V+ G + PPSRH+T RP+
Sbjct: 107 RASRIRSRERSCRVCYLEKASCDRNFPCGRCFRYNKPCRP---------------------------------------------ATVT----------------------------------QGSRR-----PVRGTSSSSLLFQSS---------PYLDLVIERSDLPAMVPLYLQAFQDLFQEGVLNRKRAIGLLKSWVDLGVMMDGDCDPTFGAFAEVKAAFQINDLEL-----EDPECLAYEPPLHAEKGRLWAARADRVLGE--GAKHLEENLVCRQANNSSRAVYMARMD-CKDQWV-ISNKAHNTYFRSPAEFMQDMWKRRCLLAFLFAAGVAPEDRLAYFKLLHFATLSTSLMKR---------------TAFLKIFDRQGRMTLYLSDHQVVKMGPNEYASLCV-----------TEPAPPSRHVTTRPD 418
BLAST of NO18G02680 vs. NCBI_GenBank
Match: XP_005854653.1 (hypothetical protein NGA_0196000, partial [Nannochloropsis gaditana CCMP526] >EKU21710.1 hypothetical protein NGA_0196000, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 69.7 bits (169), Expect = 5.500e-8 Identity = 39/109 (35.78%), Postives = 64/109 (58.72%), Query Frame = 0
Query: 142 KRHAANSPVGMKSSSKKSKKGSNVKRED----TPPSLVDLVFERVNGAQMSETYVQAFNTLQQRGHINREGMLALLRQAKRLSDVCGSDVTLGAAGIIAKALRVTPQEL 247
+R P G +S K ++ +E+ SL++ + ERV+ ++M+E ++ AF+ +Q+RG ++R GM+ +LR K+LSD+ G D+TLG IAKA V EL
Sbjct: 71 QRSMGTQPSGEESPIKAQPSRASASKEEENDGDGQSLLETILERVDRSRMAEEFLDAFHAVQRRGTVHRGGMVGMLRHWKKLSDLSGQDLTLGVGAAIAKAFHVEQWEL 179 The following BLAST results are available for this feature:
BLAST of NO18G02680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 4
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO18G02680 ID=NO18G02680|Name=NO18G02680|organism=Nannochloropsis oceanica|type=gene|length=4564bpback to top protein sequence of NO18G02680.1 >NO18G02680.1-protein ID=NO18G02680.1-protein|Name=NO18G02680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=945bpback to top Synonyms
Publications
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