NO18G02670.1, NO18G02670.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G02670.1
Unique NameNO18G02670.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1907
Alignment locationchr18:868937..871373 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:868937..871373 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G02670.1 vs.
Match: XP_005854367.1 (hypothetical protein NGA_0167501, partial [Nannochloropsis gaditana CCMP526]; XP_005854649.1 hypothetical protein NGA_0167502, partial [Nannochloropsis gaditana CCMP526]; EKU21706.1 hypothetical protein NGA_0167502, partial [Nannochloropsis gaditana CCMP526]; EKU21995.1 hypothetical protein NGA_0167501, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 346.7 bits (888), Expect = 8.700e-92
Identity = 185/329 (56.23%), Postives = 235/329 (71.43%), Query Frame = 0 
Query:   24 LVVLLLYVLLIVVSIPVAAAGPLLQCAVQNSEAAVPATEDGACACVDGWVGPECRACSRDSACSADQRCRQSLPMYQQLEGACTIGTKGFADFLGGAGSVLLRMGMAEAVEGAPFSSTPALGTVDMRVYANPAPGMFRPVFSCAASECQLSKEKAASSKGGRAGGQGGGGRVAMKCAQSECVPLCVKGVDSFCIDLMVQLLGQIGKKGTLDLVCEADGTSCVVHENVLDAYFSGILYKDCHLGECVGVKAAANLSMEESSSFDVPPSLPSALFRLNQGLALLSLLLVLGASLSSLLLYNYSKLAVDALTGF--CLEEEEGEGGRSGRRG 351
            +++ L++ LL VV+   ++A P +QCA Q+SEAA+P +ED AC CVD W GPECR C+ DS C + Q CR +LPMYQ+LEG C I TKGFADFLGGAG++ L+MGM ++ EGA  +  P  G +D+ V+ANP+PG+FRPVFSCA  +C LSKEK +        G  GG RV M+C QS C  LC K  D+FCIDLM+QLL  IG+ GTLDL+CEADG SCV+HE VLDAYF GI++ +C LGEC   + A N++++E SSF +PPS PS LFRLNQ LAL +LLLVLG+SL++LLLY YS+ AVDAL      +E   GEG      G
Sbjct:   18 IIIHLIFFLLFVVAC--SSADPPIQCAAQSSEAALPPSEDAACVCVDNWTGPECRVCTDDSVCGSGQLCRHALPMYQRLEGVCNIFTKGFADFLGGAGTLALQMGMTDS-EGA--TPAPDAGLLDLTVFANPSPGIFRPVFSCAGRQCLLSKEKDSP-------GAAGGARVGMQCQQSSCTALCDKAEDAFCIDLMLQLLASIGETGTLDLICEADGDSCVMHEAVLDAYFKGIVFDECRLGEC-APRNAGNMTLQELSSFALPPSSPSVLFRLNQALALAALLLVLGSSLATLLLYRYSRAAVDALGSVEGAMEAFAGEGAEGKAPG 333
The following BLAST results are available for this feature:
BLAST of NO18G02670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854367.18.700e-9256.23hypothetical protein NGA_0167501, partial [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G02670NO18G02670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G02670.1NO18G02670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G02670.1.cds1NO18G02670.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02670.1.cds2NO18G02670.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02670.1.cds3NO18G02670.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02670.1.cds4NO18G02670.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G02670.1 ID=NO18G02670.1|Name=NO18G02670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1907bp
CAATTTTGCAAAAGCTAACCCTATACCTTTCAAAAGCAGCCACTCACAGT
TACAACGAGCAAATGGTATCGAGGATAGAGGATGAACAATATTTCTACCC
ATTCAGATTCCTGCGTATATCGATATGTAATATCTTGGATGGCATTAAAA
ATCATAGAAGGACACCTTGACACAGAAAGGCGTTCCTTGTTGCCTGTCAG
CTGCCTTGGACATACCTTGTCTGATGGCAGGTACGGCCAACCTCTACCTC
ACTCAACGACAACAATGATAACAGATCATCTACACGAGACCTCACATGCA
GATAGGGCTAGCTTTCTCGTGGTAGTGTGCAATCAAGTGGTGCATCGAAT
AATGGTGGTGGAGCGCAAGATTTTTCACGCACCCCCTCCTACCTCAATCC
CTCCTCACGCACAACCCGCACGCGAATACACAGATGGCGGCGAGGAGATG
CTTGACGCCCATTCCGGAAGCTGTCACACGACTTAAGGGGCGACGACCCG
GGCTTGTTGTCCTCCTCCTCTACGTCCTCCTCATCGTCGTGTCCATTCCC
GTTGCCGCGGCTGGACCGCTCTTACAGTGTGCCGTCCAAAACTCTGAAGC
GGCCGTACCTGCAACAGAGGACGGGGCTTGTGCCTGCGTGGATGGCTGGG
TAGGGCCAGAATGTCGAGCGTGCTCTCGGGACAGTGCGTGTAGCGCAGAT
CAGCGCTGCCGACAGTCGTTGCCCATGTACCAGCAGTTGGAGGGCGCCTG
TACCATAGGCACGAAGGGGTTTGCAGATTTCTTGGGAGGAGCAGGGAGTG
TGCTGTTGAGGATGGGGATGGCCGAGGCGGTGGAGGGGGCCCCCTTCTCT
TCTACTCCTGCCCTTGGCACCGTCGACATGCGGGTGTACGCGAACCCCGC
CCCCGGCATGTTTCGGCCCGTATTTTCCTGCGCTGCGTCGGAGTGCCAGC
TCAGCAAGGAGAAGGCGGCCTCCTCGAAGGGAGGGAGGGCAGGAGGGCAG
GGAGGAGGAGGGCGGGTGGCGATGAAGTGTGCCCAGAGCGAATGCGTGCC
GCTGTGTGTGAAGGGCGTCGACAGCTTTTGCATTGACCTGATGGTGCAGC
TGCTGGGGCAGATCGGGAAGAAGGGCACCCTGGACCTGGTCTGCGAGGCG
GACGGGACGAGCTGCGTGGTACACGAGAATGTGCTGGATGCCTACTTCTC
CGGCATCTTGTATAAAGACTGCCACCTCGGGGAGTGCGTGGGAGTCAAAG
CAGCGGCCAATCTAAGCATGGAAGAGAGCAGCTCCTTCGACGTGCCCCCC
TCCCTCCCCTCCGCCCTCTTCCGCCTGAACCAAGGCCTGGCACTCCTCTC
CCTCCTCCTCGTCCTCGGAGCCTCCCTCTCCTCCCTCCTCCTCTACAACT
ATAGCAAGTTGGCTGTTGACGCCCTCACAGGCTTTTGCCTCGAGGAGGAG
GAAGGGGAGGGGGGAAGGAGCGGGCGACGGGGGATGGAGTAGGTGGAGCA
GGAGGAGCAGGAGGGGAAGCATTGACAAAGACCACACAAGGAGAACGAGG
GGAAAGGGGGATTGAGAAGCAGGGAAGCGCCACGAGCGTCCTCCCTGCCT
CCCATCCTTCTCCCTCGCCTTTCCCCTCCCCCGCAGGCCCGGCCTTGGTT
TGGCGGAACGTCACCTACAGGGTGCCCTCCTCCTCTCCCTCCTCCTCCTC
CTCCTCCTCCTCCTCGTTGTCAACATCAAAAAGCACAGTGATCCTACACG
GCGTGAGCGGGCGGGCGGGGCCGGGCGAGCTAGTGGGGATCATGGGTCCG
TCGGGGAGCGGGAAGACTACCCTCTTGGACATCCTGTCGCTTAGGGAGGG
GAAGGGCGGCAGCCGCAGGAAGGGAGGGAGGAAGGGAGGGAGGGAGGGAG
GGAAGGG
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protein sequence of NO18G02670.1

>NO18G02670.1-protein ID=NO18G02670.1-protein|Name=NO18G02670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MAARRCLTPIPEAVTRLKGRRPGLVVLLLYVLLIVVSIPVAAAGPLLQCA
VQNSEAAVPATEDGACACVDGWVGPECRACSRDSACSADQRCRQSLPMYQ
QLEGACTIGTKGFADFLGGAGSVLLRMGMAEAVEGAPFSSTPALGTVDMR
VYANPAPGMFRPVFSCAASECQLSKEKAASSKGGRAGGQGGGGRVAMKCA
QSECVPLCVKGVDSFCIDLMVQLLGQIGKKGTLDLVCEADGTSCVVHENV
LDAYFSGILYKDCHLGECVGVKAAANLSMEESSSFDVPPSLPSALFRLNQ
GLALLSLLLVLGASLSSLLLYNYSKLAVDALTGFCLEEEEGEGGRSGRRG
ME*
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mRNA from alignment at chr18:868937..871373-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G02670.1 ID=NO18G02670.1|Name=NO18G02670.1|organism=Nannochloropsis oceanica|type=mRNA|length=2437bp|location=Sequence derived from alignment at chr18:868937..871373- (Nannochloropsis oceanica)
CAATTTTGCAAAAGCTAACCCTATACCTTTCAAAAGCAGCCACTCACAGT
TACAACGAGCAAATGGTATCGAGGATAGAGGATGAACAATATTTCTACCC
ATTCAGATTCCTGCGTATATCGATATGTAATATCTTGGATGGCATTAAAA
ATCATAGAAGGACACCTTGACACAGAAAGGCGTTCCTTGTTGCCTGTCAG
CTGCCTTGGACATACCTTGTCTGATGGCAGGTACGGCCAACCTCTACCTC
ACTCAACGACAACAATGATAACAGATCATCTACACGAGACCTCACATGCA
GATAGGGCTAGCTTTCTCGTGGTAGTGTGCAATCAAGTGGTGCATCGAAT
AATGGTGGTGGAGCGCAAGATTTTTCACGCACCCCCTCCTACCTCAATCC
CTCCTCACGCACAACCCGCACGCGAATACACAGATGGCGGCGAGGAGATG
CTTGACGCCCATTCCGGAAGCTGTCACACGACTTAAGGGGCGACGACCCG
GGCTTGTTGTCCTCCTCCTCTACGTCCTCCTCATCGTCGTGTCCATTCCC
GTTGCCGCGGCTGGACCGCTCTTACAGTGTGCCGTCCAAAACTCTGAAGC
GGCCGTACCTGCAACAGAGGACGGGGCTTGTGCCTGCGTGGATGGCTGGG
TAGGGCCAGAATGTCGAGTAAGTATGTTACTTGTTCCCCTCCCTCCCTCC
CTCCCTCCCTCTTTCCCTCCCTCCCTCTCATCTTCACACGGTCCGATTGG
CTCATATGCGGCACATTTACGTCTTCTTCCGCCCTGACATTTGTACATGG
ATTTTGCTCATTCTCTCAATACGTCATGCCCTCTTTCCTATCCTCAATTC
CGTCTTCCTTTTATCGTGAAGGCGTGCTCTCGGGACAGTGCGTGTAGCGC
AGATCAGCGCTGCCGACAGTCGTTGCCCATGTACCAGCAGTTGGAGGGCG
CCTGTACCATAGGCACGAAGGGGTTTGCAGATTTCTTGGGAGGAGCAGGG
AGTGTGCTGTTGAGGATGGGGATGGCCGAGGCGGTGGAGGGGGGTAAGAC
ACTCCCGGCATTTTATTCGATTTTCCCGCTTGTTTCGGAACCTTCTTCTC
TCTCTTGCCCCTCTCCTACACCACACAGCCACCACGACTCATACTCTCTC
CCTCCCCTCCCTCCTTCCCTGCCCCCTCCCTCTCATGCCACACAGCCCCC
TTCTCTTCTACTCCTGCCCTTGGCACCGTCGACATGCGGGTGTACGCGAA
CCCCGCCCCCGGCATGTTTCGGCCCGTATTTTCCTGCGCTGCGTCGGAGT
GCCAGCTCAGCAAGGAGAAGGCGGCCTCCTCGAAGGGAGGGAGGGCAGGA
GGGCAGGGAGGAGGAGGGCGGGTGGCGATGAAGTGTGCCCAGAGCGAATG
CGTGCCGCTGTGTGTGAAGGGCGTCGACAGCTTTTGCATTGACCTGATGG
TGCAGCTGCTGGGGCAGATCGGGAAGAAGGGCACCCTGGACCTGGTCTGC
GAGGCGGACGGGACGAGCTGCGTGGTACACGAGAATGTGCTGGATGCCTA
CTTCTCCGGCATCTTGTATAAAGACTGCCACCTCGGGGAGTGCGTGGGAG
TCAAAGCAGCGGCCAATCTAAGCATGGAAGAGAGCAGGTAAATGAACGTC
ATCATTTCCTTCCTTCCTTCCCTCCATCCCTCCTTCCCTCCCTCCTTTCC
TCCCTTCCAGTCTGCATGTGATTCTCTTTATGCCCTTATCTCTCTGGTCC
TCCATCTCGTCACCCATCGCCGTGGTCACCACCTTACCTCCCCCCTTCCC
TCCCACCGCAGCTCCTTCGACGTGCCCCCCTCCCTCCCCTCCGCCCTCTT
CCGCCTGAACCAAGGCCTGGCACTCCTCTCCCTCCTCCTCGTCCTCGGAG
CCTCCCTCTCCTCCCTCCTCCTCTACAACTATAGCAAGTTGGCTGTTGAC
GCCCTCACAGGCTTTTGCCTCGAGGAGGAGGAAGGGGAGGGGGGAAGGAG
CGGGCGACGGGGGATGGAGTAGGTGGAGCAGGAGGAGCAGGAGGGGAAGC
ATTGACAAAGACCACACAAGGAGAACGAGGGGAAAGGGGGATTGAGAAGC
AGGGAAGCGCCACGAGCGTCCTCCCTGCCTCCCATCCTTCTCCCTCGCCT
TTCCCCTCCCCCGCAGGCCCGGCCTTGGTTTGGCGGAACGTCACCTACAG
GGTGCCCTCCTCCTCTCCCTCCTCCTCCTCCTCCTCCTCCTCCTCGTTGT
CAACATCAAAAAGCACAGTGATCCTACACGGCGTGAGCGGGCGGGCGGGG
CCGGGCGAGCTAGTGGGGATCATGGGTCCGTCGGGGAGCGGGAAGACTAC
CCTCTTGGACATCCTGTCGCTTAGGGAGGGGAAGGGCGGCAGCCGCAGGA
AGGGAGGGAGGAAGGGAGGGAGGGAGGGAGGGAAGGG
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Coding sequence (CDS) from alignment at chr18:868937..871373-

>NO18G02670.1 ID=NO18G02670.1|Name=NO18G02670.1|organism=Nannochloropsis oceanica|type=CDS|length=1059bp|location=Sequence derived from alignment at chr18:868937..871373- (Nannochloropsis oceanica)
ATGGCGGCGAGGAGATGCTTGACGCCCATTCCGGAAGCTGTCACACGACT
TAAGGGGCGACGACCCGGGCTTGTTGTCCTCCTCCTCTACGTCCTCCTCA
TCGTCGTGTCCATTCCCGTTGCCGCGGCTGGACCGCTCTTACAGTGTGCC
GTCCAAAACTCTGAAGCGGCCGTACCTGCAACAGAGGACGGGGCTTGTGC
CTGCGTGGATGGCTGGGTAGGGCCAGAATGTCGAGCGTGCTCTCGGGACA
GTGCGTGTAGCGCAGATCAGCGCTGCCGACAGTCGTTGCCCATGTACCAG
CAGTTGGAGGGCGCCTGTACCATAGGCACGAAGGGGTTTGCAGATTTCTT
GGGAGGAGCAGGGAGTGTGCTGTTGAGGATGGGGATGGCCGAGGCGGTGG
AGGGGGCCCCCTTCTCTTCTACTCCTGCCCTTGGCACCGTCGACATGCGG
GTGTACGCGAACCCCGCCCCCGGCATGTTTCGGCCCGTATTTTCCTGCGC
TGCGTCGGAGTGCCAGCTCAGCAAGGAGAAGGCGGCCTCCTCGAAGGGAG
GGAGGGCAGGAGGGCAGGGAGGAGGAGGGCGGGTGGCGATGAAGTGTGCC
CAGAGCGAATGCGTGCCGCTGTGTGTGAAGGGCGTCGACAGCTTTTGCAT
TGACCTGATGGTGCAGCTGCTGGGGCAGATCGGGAAGAAGGGCACCCTGG
ACCTGGTCTGCGAGGCGGACGGGACGAGCTGCGTGGTACACGAGAATGTG
CTGGATGCCTACTTCTCCGGCATCTTGTATAAAGACTGCCACCTCGGGGA
GTGCGTGGGAGTCAAAGCAGCGGCCAATCTAAGCATGGAAGAGAGCAGCT
CCTTCGACGTGCCCCCCTCCCTCCCCTCCGCCCTCTTCCGCCTGAACCAA
GGCCTGGCACTCCTCTCCCTCCTCCTCGTCCTCGGAGCCTCCCTCTCCTC
CCTCCTCCTCTACAACTATAGCAAGTTGGCTGTTGACGCCCTCACAGGCT
TTTGCCTCGAGGAGGAGGAAGGGGAGGGGGGAAGGAGCGGGCGACGGGGG
ATGGAGTAG
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Synonyms
Publications