NO18G02670, NO18G02670 (gene) Nannochloropsis oceanica

Overview
NameNO18G02670
Unique NameNO18G02670
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2437
Alignment locationchr18:868937..871373 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:868937..871373 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO18G02670 vs. NCBI_GenBank
Match: XP_005854367.1 (hypothetical protein NGA_0167501, partial [Nannochloropsis gaditana CCMP526] >XP_005854649.1 hypothetical protein NGA_0167502, partial [Nannochloropsis gaditana CCMP526] >EKU21706.1 hypothetical protein NGA_0167502, partial [Nannochloropsis gaditana CCMP526] >EKU21995.1 hypothetical protein NGA_0167501, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 287.7 bits (735), Expect = 4.100e-74
Identity = 153/275 (55.64%), Postives = 192/275 (69.82%), Query Frame = 0 
Query:   25 KACSRDSACSADQRCRQSLPMYQQLEGACTIGTKGFADFLGGAGSVLLRMGMAEAVEGAPFSSTPALGTVDMRVYANPAPGMFRPVFSCAASECQLSKEKAASSKGXXXXXXXXXXRVAMKCAQSECVPLCVKGVDSFCIDLMVQLLGQIGKKGTLDLVCEADGTSCVVHENVLDAYFSGILYKDCHLGECVGVKAAANLSMEESSSFDVPPSLPSALFRLNQGLALLSLLLVLGASLSSLLLYNYSKLAVDALTGF--CLEEEEGEGGRSGRRG 298
            + C+ DS C + Q CR +LPMYQ+LEG C I TKGFADFLGGAG++ L+MGM ++ EGA  +  P  G +D+ V+ANP+PG+FRPVFSCA  +C LSKEK +              RV M+C QS C  LC K  D+FCIDLM+QLL  IG+ GTLDL+CEADG SCV+HE VLDAYF GI++ +C LGEC   + A N++++E SSF +PPS PS LFRLNQ LAL +LLLVLG+SL++LLLY YS+ AVDAL      +E   GEG      G
Sbjct:   70 RVCTDDSVCGSGQLCRHALPMYQRLEGVCNIFTKGFADFLGGAGTLALQMGMTDS-EGA--TPAPDAGLLDLTVFANPSPGIFRPVFSCAGRQCLLSKEKDSPGAA-------GGARVGMQCQQSSCTALCDKAEDAFCIDLMLQLLASIGETGTLDLICEADGDSCVMHEAVLDAYFKGIVFDECRLGEC-APRNAGNMTLQELSSFALPPSSPSVLFRLNQALALAALLLVLGSSLATLLLYRYSRAAVDALGSVEGAMEAFAGEGAEGKAPG 333
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BLAST of NO18G02670 vs. NCBI_GenBank
Match: EWM27462.1 (putative abc transporter [Nannochloropsis gaditana])

HSP 1 Score: 82.0 bits (201), Expect = 3.400e-12
Identity = 67/237 (28.27%), Postives = 102/237 (43.04%), Query Frame = 0 
Query:   39 CRQSLPMYQQLEGACTIGTKGFADFLGGAGSVLLRMGMAEAVEGAPFSSTPALGTVDMRVYANPAPGMFRPVFSCAASECQLSKEKAASSKGXXXXXXXXXXRVAMKCAQSECVPLC-VKGVDSFCIDLMVQLLGQIGKKGTLDLVCE------ADGTSCVVHENVLDAYFSGILYKDCHLGECVGVKAAANLSMEESSSFDVPPSLPSALFRLNQGLALLSLLLVLGASLSSLLLY 269
            C +SL + ++  G C + T+  ++FL G   V  ++  A A+    F      G  D  VYA+        +F C+   C   K+   +             ++   C  ++C   C V G D  C + +   + Q+G KG + L C       A+G  C+VHEN+LD YF G+   DCH GEC    A A+++  E S  D      S        LA  + +LVL     +L LY
Sbjct:  108 CERSLEVIEKTHGVCRVTTQAVSNFLQGQAFVTAQITAAGAMH---FEFVKVTGERD--VYAS--------MFRCSGVGCTQVKDPKTN-------------KIQTSCPAAQCNMTCEVGGPDESCTEFVASQIAQVGTKGPVTLTCNDEATAPANGAQCIVHENLLDFYFQGVELDDCHFGECAPAGARAHVA--EGSVADFALRNESIFQESTYILAGFNGVLVLVVICLALALY 316
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BLAST of NO18G02670 vs. NCBI_GenBank
Match: EWM23481.1 (hypothetical protein Naga_100262g1 [Nannochloropsis gaditana])

HSP 1 Score: 80.9 bits (198), Expect = 7.500e-12
Identity = 35/62 (56.45%), Postives = 46/62 (74.19%), Query Frame = 0 
Query:   21 PFIVKACSRDSACSADQRCRQSLPMYQQLEGACTIGTKGFADFLGGAGSVLLRMGMAEAVEG 83
            P + + C+ DS C + Q CR +LPMYQ+LEG C I TKGFADFLGGAG++ L+MGM ++  G
Sbjct:   35 PHVFQVCTDDSVCGSGQLCRHALPMYQRLEGVCNIFTKGFADFLGGAGTLALQMGMTDSEGG 96
The following BLAST results are available for this feature:
BLAST of NO18G02670 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_005854367.14.100e-7455.64hypothetical protein NGA_0167501, partial [Nannoch... [more]
EWM27462.13.400e-1228.27putative abc transporter [Nannochloropsis gaditana... [more]
EWM23481.17.500e-1256.45hypothetical protein Naga_100262g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL010nonsL010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR094ncniR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007346NSK007346Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G02670.2NO18G02670.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO18G02670.1NO18G02670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100262g1gene6975Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G02670.2NO18G02670.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO18G02670.1NO18G02670.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G02670 ID=NO18G02670|Name=NO18G02670|organism=Nannochloropsis oceanica|type=gene|length=2437bp
CAATTTTGCAAAAGCTAACCCTATACCTTTCAAAAGCAGCCACTCACAGT
TACAACGAGCAAATGGTATCGAGGATAGAGGATGAACAATATTTCTACCC
ATTCAGATTCCTGCGTATATCGATATGTAATATCTTGGATGGCATTAAAA
ATCATAGAAGGACACCTTGACACAGAAAGGCGTTCCTTGTTGCCTGTCAG
CTGCCTTGGACATACCTTGTCTGATGGCAGGTACGGCCAACCTCTACCTC
ACTCAACGACAACAATGATAACAGATCATCTACACGAGACCTCACATGCA
GATAGGGCTAGCTTTCTCGTGGTAGTGTGCAATCAAGTGGTGCATCGAAT
AATGGTGGTGGAGCGCAAGATTTTTCACGCACCCCCTCCTACCTCAATCC
CTCCTCACGCACAACCCGCACGCGAATACACAGATGGCGGCGAGGAGATG
CTTGACGCCCATTCCGGAAGCTGTCACACGACTTAAGGGGCGACGACCCG
GGCTTGTTGTCCTCCTCCTCTACGTCCTCCTCATCGTCGTGTCCATTCCC
GTTGCCGCGGCTGGACCGCTCTTACAGTGTGCCGTCCAAAACTCTGAAGC
GGCCGTACCTGCAACAGAGGACGGGGCTTGTGCCTGCGTGGATGGCTGGG
TAGGGCCAGAATGTCGAGTAAGTATGTTACTTGTTCCCCTCCCTCCCTCC
CTCCCTCCCTCTTTCCCTCCCTCCCTCTCATCTTCACACGGTCCGATTGG
CTCATATGCGGCACATTTACGTCTTCTTCCGCCCTGACATTTGTACATGG
ATTTTGCTCATTCTCTCAATACGTCATGCCCTCTTTCCTATCCTCAATTC
CGTCTTCCTTTTATCGTGAAGGCGTGCTCTCGGGACAGTGCGTGTAGCGC
AGATCAGCGCTGCCGACAGTCGTTGCCCATGTACCAGCAGTTGGAGGGCG
CCTGTACCATAGGCACGAAGGGGTTTGCAGATTTCTTGGGAGGAGCAGGG
AGTGTGCTGTTGAGGATGGGGATGGCCGAGGCGGTGGAGGGGGgtaagac
actcccggcattttattcgattttcccgcttgtttcggaaccttcttctc
tctcttgcccctctcctacaccacacagccaccacgactcatactctctc
cctcccctccctccttccctgccccctccctctcatgccacacagCCCCC
TTCTCTTCTACTCCTGCCCTTGGCACCGTCGACATGCGGGTGTACGCGAA
CCCCGCCCCCGGCATGTTTCGGCCCGTATTTTCCTGCGCTGCGTCGGAGT
GCCAGCTCAGCAAGGAGAAGGCGGCCTCCTCGAAGGGAGGGAGGGCAGGA
GGGCAGGGAGGAGGAGGGCGGGTGGCGATGAAGTGTGCCCAGAGCGAATG
CGTGCCGCTGTGTGTGAAGGGCGTCGACAGCTTTTGCATTGACCTGATGG
TGCAGCTGCTGGGGCAGATCGGGAAGAAGGGCACCCTGGACCTGGTCTGC
GAGGCGGACGGGACGAGCTGCGTGGTACACGAGAATGTGCTGGATGCCTA
CTTCTCCGGCATCTTGTATAAAGACTGCCACCTCGGGGAGTGCGTGGGAG
TCAAAGCAGCGGCCAATCTAAGCATGGAAGAGAGCAGgtaaatgaacgtc
atcatttccttccttccttccctccatccctccttccctccctcctttcc
tcccttccagtctgcatgtgattctctttatgcccttatctctctggtcc
tccatctcgtcacccatcgccgtggtcaccaccttacctccccccttccc
tcccaccgcagCTCCTTCGACGTGCCCCCCTCCCTCCCCTCCGCCCTCTT
CCGCCTGAACCAAGGCCTGGCACTCCTCTCCCTCCTCCTCGTCCTCGGAG
CCTCCCTCTCCTCCCTCCTCCTCTACAACTATAGCAAGTTGGCTGTTGAC
GCCCTCACAGGCTTTTGCCTCGAGGAGGAGGAAGGGGAGGGGGGAAGGAG
CGGGCGACGGGGGATGGAGTAGGTGGAGCAGGAGGAGCAGGAGGGGAAGC
ATTGACAAAGACCACACAAGGAGAACGAGGGGAAAGGGGGATTGAGAAGC
AGGGAAGCGCCACGAGCGTCCTCCCTGCCTCCCATCCTTCTCCCTCGCCT
TTCCCCTCCCCCGCAGGCCCGGCCTTGGTTTGGCGGAACGTCACCTACAG
GGTGCCCTCCTCCTCTCCCTCCTCCTCCTCCTCCTCCTCCTCCTCGTTGT
CAACATCAAAAAGCACAGTGATCCTACACGGCGTGAGCGGGCGGGCGGGG
CCGGGCGAGCTAGTGGGGATCATGGGTCCGTCGGGGAGCGGGAAGACTAC
CCTCTTGGACATCCTGTCGCTTAGGGAGGGGAAGGGCGGCAGCCGCAGGA
AGGGAGGGAGGAAGGGAGGGAGGGAGGGAGGGAAGGG
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protein sequence of NO18G02670.2

>NO18G02670.2-protein ID=NO18G02670.2-protein|Name=NO18G02670.2|organism=Nannochloropsis oceanica|type=polypeptide|length=300bp
MDFAHSLNTSCPLSYPQFRLPFIVKACSRDSACSADQRCRQSLPMYQQLE
GACTIGTKGFADFLGGAGSVLLRMGMAEAVEGAPFSSTPALGTVDMRVYA
NPAPGMFRPVFSCAASECQLSKEKAASSKGGRAGGQGGGGRVAMKCAQSE
CVPLCVKGVDSFCIDLMVQLLGQIGKKGTLDLVCEADGTSCVVHENVLDA
YFSGILYKDCHLGECVGVKAAANLSMEESSSFDVPPSLPSALFRLNQGLA
LLSLLLVLGASLSSLLLYNYSKLAVDALTGFCLEEEEGEGGRSGRRGME*
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protein sequence of NO18G02670.1

>NO18G02670.1-protein ID=NO18G02670.1-protein|Name=NO18G02670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MAARRCLTPIPEAVTRLKGRRPGLVVLLLYVLLIVVSIPVAAAGPLLQCA
VQNSEAAVPATEDGACACVDGWVGPECRACSRDSACSADQRCRQSLPMYQ
QLEGACTIGTKGFADFLGGAGSVLLRMGMAEAVEGAPFSSTPALGTVDMR
VYANPAPGMFRPVFSCAASECQLSKEKAASSKGGRAGGQGGGGRVAMKCA
QSECVPLCVKGVDSFCIDLMVQLLGQIGKKGTLDLVCEADGTSCVVHENV
LDAYFSGILYKDCHLGECVGVKAAANLSMEESSSFDVPPSLPSALFRLNQ
GLALLSLLLVLGASLSSLLLYNYSKLAVDALTGFCLEEEEGEGGRSGRRG
ME*
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Synonyms
Publications