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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr18 | genome | chr18:859531..863534 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO18G02640.1 vs.
Match: EWM23467.1 (hypothetical protein Naga_100651g1, partial [Nannochloropsis gaditana]) HSP 1 Score: 134.4 bits (337), Expect = 7.400e-28 Identity = 95/185 (51.35%), Postives = 122/185 (65.95%), Query Frame = 0
Query: 11 PFP-SHGQGSIH----VQYPSA-----PSDASFVSSYPA---SSLPVIPEAEREESEESYWRRAREG---GRVHLGGRKMMPQQQEDHGYLTS--THMINKQEVNINQQQQSLAQEAATRQREIEEGMQALRGRIQAIDDKIKRASRERATAATRLQAKLEGKVKGLRTEWDGRIEEHFDWIAKE 178
P P S+GQG H QYPS P+ AS YP+ SS+PVIPE ER ESEE R R G G GR+ PQ +D G+L S +H INK EV+I QQQ+SLA+E A R+RE+EE +QAL RI AID+KI+R +RERA+ A+RLQ K+ +V+GL+ EW+G++EE+FDWI KE
Sbjct: 6 PLPTSYGQGYAHSGQHTQYPSPAFPAFPTAASTSRPYPSTTFSSMPVIPEVER-ESEEDAAGRGRGGIYSGMAGDDGRR-KPQMYQD-GFLASSTSHTINKHEVSIAQQQRSLAEETAIRRREMEEEIQALHKRIYAIDEKIQRTARERASTASRLQQKIGSRVEGLQKEWEGKVEENFDWILKE 187
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO18G02640.1 ID=NO18G02640.1|Name=NO18G02640.1|organism=Nannochloropsis oceanica|type=mRNA|length=3010bp TCATCGATGGACAAGCATGCGGAAGGAAAGGGTGATGGCTTGATTTATTC TCCTTGGCATGCTGCAGCCTTTCTCTCTGCAGCATTTTGCGAAGTCTCTC TCGAACAGCAACTGATGAGATATTTGATAGACAGATGCCTGAAGCCGCAA TCAAGGCTGAAATCATCTTGTCTGGCATAGATCATACCACTTACAGGTTG CAATGGCGTCATCAATGACGTACTCGCTTCAGTCTCTTCAATTTACTTAC CCACTTCTCTCCGACCCGCACTGATTCCCACGTATCTCCGTGTCTACCTT TGGATAAAAGTTGCTCTCGATGGGTATAACATTTGGGTTATTCTCCTCTA CAGCCTCAACATGCGAGAGAAGCAGCAGACAAAACAGAAAGAAAGTCCTA CGCCCAGTCTCGAGTGCTTCCGCTCTTTTCCTACACCCTCATCCTCTTGC TACCCGCTCTTGGCTTGCTTCTTTGCTTTCCCGTTAACCAATATTTTGGG AGCGTCTTGCAGGGAGGATGAGCCTTTCTCTCTTTCCCGGTCCTGCATTT CGTCCGGTAGTATGCCTACCTCGGATTAGCGAACAATAAAGCAATTGAGA AGAGGCGGGAGGAAAATTAGATTAAGAGAATAAGACAGCAGACGCAAAAG GAAAAGATGAGATATGGAAAGCAGTAGAAAAGGAAAAAAATAAAAGAGAA ACAGGGGAAAACTGGGTTCACCGATATTTTGCGGGGACAAGATCTCCAAT CTACTCCCTCGACTATTCCTCCTTGGCCACACATGCGCACGAATATCCAA TCCTGCTTGGTGAGGTCATAGTCTGGGGAAGGAAACTATAGCTGTGACAG AGCTCCAGAAGGAGGTTGGCTTAATGACGAATTATTATACGCCTGAATGA TTCGCGTACACACTCCCATTCCTAACCATCCATTGCCTCCCCGAAATACA TGTCAATGTCCTAACCATCCATAGTCTCCCCGTAATATCTATCAATAAAT ATAAAGACCCTATCAAATATTTCGATGTATTCAAGGGCTTAATCATGCTC AATATGCTTAATTATCGAACATATTTGAAATCCTTCTTATTTTTTGTGAG TGCCTGCGTCTTTATTTTGATGTGAGGAAAGTATGTCCCCAACAAACCCC AAAAAAGATCCTTATGATGCTTGGTATTTGTGGAGCCGCTGCTTTATGGC GCTGCTAGAGGATGGGCAAGAATGCCCCTCACCGCAACGGGCATCGTATC GTCCCTGACATCATCAGACCACACACCTCATCCCACCCGGAGGAGGATGG CTGAAACGCTTGCGCCCGTGCTGCCAACACAACCCTTATATTGCATGAGT GTCACGCCCGCACTCAATTACAACACACACACACACACACATACATATTC ATCTACATCTACACAGCGTGTGCAGACCTCCTCGACCGTCGTGCCCTTCT TCTCCTCGTTTGAGCTCTCATCACTCAAGCATCGTCGCCAACCTCAACGC CGCATCGCTCATACACACACGCGCCCAGGGAGGGAGCTGAGATGCAGCAG CAACAGCAGCATTACGCTCCCCCTTTTCCTTCGCACGGCCAGGGCAGTAT TCACGTGCAATATCCCTCCGCTCCTTCGGATGCTTCGTTCGTGTCCTCCT ACCCTGCCTCTAGCCTGCCCGTCATACCGGAAGCAGAGCGCGAGGAGAGC GAGGAGAGCTATTGGAGGCGAGCGAGAGAGGGAGGCAGGGTACACTTAGG GGGACGCAAGATGATGCCGCAGCAGCAGGAAGATCACGGCTACTTGACTT CCACCCACATGATTAATAAGCAAGAAGTGAATATCAACCAACAACAACAG TCGCTGGCCCAGGAGGCGGCGACGAGGCAGAGGGAGATAGAGGAAGGGAT GCAGGCATTACGAGGTCGCATCCAAGCCATCGACGACAAGATAAAGCGTG CGTCCCGGGAGCGCGCCACAGCCGCCACCCGGCTGCAAGCCAAGTTGGAG GGGAAGGTAAAGGGGCTGCGGACGGAATGGGACGGGCGAATCGAAGAGCA CTTTGACTGGATCGCAAAGGAGGCTCTTCCTCCTCTGACCTCTCGCCTCC TCGAGGTCGAAGACAGCACGCGTCACTTCGCGCATTCCGTGCTTCCTCCT GCCATCGAGGCGACCCTTCTCCTGGAGGGAGGGAGGGAGGCAGGGAGGGA GGGAGGGAGGGAGGGAGGGGTAGAGGCAATGAGAAGGGCGTGGGAGACGG AGAAAAACAAAGTGATGAAACGAGAGCAGCGGATCGAGCAGCGTCTGGCT GAGCACGTGGAGAAGACGGCTTCGGAGTTCGAGAGAGAGACAGGCACAAG GCTCGCTGCTCTTCGTGCCCTCGAGGCTGACATCCGCGCCCCTCAACTGG AGCTCGTGGACGGAGAGGAAGGCTTTCAGCAGCAAGTCAAGACGACGCTC AGAGAGCTGTACGACGGCGTGGCGATCGAGGCCCAGGCCCGTGAAGAGGA AGACTGCCTCGTGCTTGACTCCATGCTGGAGTCCCAGAAGGCCCTGCAGA GAATCATTCTAGAAAACTACGGGGGAGGGAGGGGAGCAGTAGGAGGAGGA GGAGTAGGAGTAGGAGGGGGCTCGTTCTTTTTGAGGCTCGAGTCGTGTGG GGAGGGAAGGAGTCATGAGGAGGATGAGGAAGGGGTGGAGGAATGGGAGA GGTGAGGGAAGAAGGGAAGAAGGGAAGGAGGGAAGGGCGAATGTATTTTA AGTCGGGCCATGGACTGACCATGGTGGCTAGGTGGAGTTAGAAAGTGGAT GCGTGCGTTAGGCAGCACACGCACACGGAGGAACCAAACCAAAACAACAG CTTCTACGACGAAGGCAAGAAATGTAGATCGGAAGAATACACAGGGATAA AAGAAATAGCTGATTCGAACCCACCGCATTCACTTAAGAAGAAGGGGACT ACTTTATTCAGGAAAGAAAGATGCACATGGGCCAGTCGCAGTGCGTCTCA CACAGTAGCC back to topprotein sequence of NO18G02640.1 >NO18G02640.1-protein ID=NO18G02640.1-protein|Name=NO18G02640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp MQQQQQHYAPPFPSHGQGSIHVQYPSAPSDASFVSSYPASSLPVIPEAER EESEESYWRRAREGGRVHLGGRKMMPQQQEDHGYLTSTHMINKQEVNINQ QQQSLAQEAATRQREIEEGMQALRGRIQAIDDKIKRASRERATAATRLQA KLEGKVKGLRTEWDGRIEEHFDWIAKEALPPLTSRLLEVEDSTRHFAHSV LPPAIEATLLLEGGREAGREGGREGGVEAMRRAWETEKNKVMKREQRIEQ RLAEHVEKTASEFERETGTRLAALRALEADIRAPQLELVDGEEGFQQQVK TTLRELYDGVAIEAQAREEEDCLVLDSMLESQKALQRIILENYGGGRGAV GGGGVGVGGGSFFLRLESCGEGRSHEEDEEGVEEWER* back to topmRNA from alignment at chr18:859531..863534+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO18G02640.1 ID=NO18G02640.1|Name=NO18G02640.1|organism=Nannochloropsis oceanica|type=mRNA|length=4004bp|location=Sequence derived from alignment at chr18:859531..863534+ (Nannochloropsis oceanica) TCATCGATGGACAAGCATGCGGAAGGAAAGGGTGATGGCTTGATTTATTC
TCCTTGGCATGCTGCAGCCTTTCTCTCTGCAGCATTTTGCGAAGTCTCTC
TCGAACAGCAACTGATGAGATATTTGATAGACAGATGCCTGAAGCCGCAA
TCAAGGCTGAAATCATCTTGTCTGGCATAGATCATACCACTTACAGGTTG
CAATGGCGTCATCAATGACGTACTCGCTTCAGTCTCTTCAATTTACTTAC
CCACTTCTCTCCGACCCGCACTGATTCCCACGTATCTCCGTGTCTACCTT
TGGATAAAAGTTGCTCTCGATGGGTATAACATTTGGGTTATTCTCCTCTA
CAGCCTCAACATGCGAGAGAAGCAGCAGACAAAACAGAAAGAAAGTCCTA
CGCCCAGTCTCGAGTGCTTCCGCTCTTTTCCTACACCCTCATCCTCTTGC
TACCCGCTCTTGGCTTGCTTCTTTGCTTTCCCGTTAACCAATATTTTGGG
AGCGTCTTGCAGGGAGGATGAGCCTTTCTCTCTTTCCCGGTCCTGCATTT
CGTCCGGTAGTATGCCTACCTCGGATTAGCGAACAATAAAGCAATTGAGA
AGAGGCGGGAGGAAAATTAGATTAAGAGAATAAGACAGCAGACGCAAAAG
GAAAAGATGAGATATGGAAAGCAGTAGAAAAGGAAAAAAATAAAAGAGAA
ACAGGGGAAAACTGGGTTCACCGATATTTTGCGGGGACAAGATCTCCAAT
CTACTCCCTCGACTATTCCTCCTTGGCCACACATGCGCACGAATATCCAA
TCCTGCTTGGTGAGGTCATAGTCTGGGGAAGGAAACTATAGCTGTGACAG
AGCTCCAGAAGGAGGTTGGCTTAATGACGAATTATTATACGCCTGAATGA
TTCGCGTACACACTCCCATTCCTAACCATCCATTGCCTCCCCGAAATACA
TGTCAATGTCCTAACCATCCATAGTCTCCCCGTAATATCTATCAATAAAT
ATAAAGACCCTATCAAATATTTCGATGTATTCAAGGGCTTAATCATGCTC
AATATGCTTAATTATCGAACATATTTGAAATCCTTCTTATTTTTTGTGAG
TGCCTGCGTCTTTATTTTGATGTGAGGAAAGTATGTCCCCAACAAACCCC
AAAAAAGATCCTTATGATGCTTGGTATTTGTGGAGCCGCTGCTTTATGGC
GCTGCTAGAGGATGGGCAAGAATGCCCCTCACCGCAACGGGCATCGTATC
GTCCCTGACATCATCAGACCACACACCTCATCCCACCCGGAGGAGGATGG
CTGAAACGCTTGCGCCCGTGCTGCCAACACAACCCTTATATTGCATGAGT
GTCACGCCCGCACTCAATTACAACACACACACACACACACATACATATTC
ATCTACATCTACACAGCGTGTGCAGACCTCCTCGACCGTCGTGCCCTTCT
TCTCCTCGTTTGAGCTCTCATCACTCAAGCATCGTCGCCAACCTCAACGC
CGCATCGCTCATACACACACGCGCCCAGGGAGGGAGCTGAGATGCAGCAG
CAACAGCAGCATTACGCTCCCCCTTTTCCTTCGCACGGCCAGGGCAGTAT
TCACGTGCAATATCCCTCCGCTCCTTCGGATGCTTCGTTCGTGTCCTCCT
ACCCTGCCTCTAGCCTGCCCGTCATACCGGAAGCAGAGCGCGAGGAGAGC
GAGGAGAGCTATTGGAGGCGAGCGAGAGAGGGAGGCAGGGTACACTTAGG
GGGACGCAAGATGATGCCGCAGCAGCAGGAAGAGTGAGTTGTAGTGTGTG
CTCTGTGTGAGGGTGGCTGTGGGTGCGTCTTCAACGTCATCTCCCTCCTC
CCATGAATGACGCATGCATTATAAGCGCCCTTCTTTACGTCTCTTTCCTC
ACTCTCCTCCCCTCTCTTCCGCCTTCCTACATTCCGATCACAGTCACGGC
TACTTGACTTCCACCCACATGATTAATAAGCAAGAAGTGAATATCAACCA
ACAACAACAGTCGCTGGCCCAGGAGGCGGCGACGAGGCAGAGGGAGATAG
AGGAAGGGATGCAGGTAGGGAGAGAATGAAGCAGGGTGTGTGGAGGGTGC
AAGGGCCAGGGTTGAGGATGATTTTTAACTCACGTTCGCAATAAATCTTG
GTATTGTACACCAAAGGCATTACGAGGTCGCATCCAAGCCATCGACGACA
AGGTACGTCCTTCAGGCCCTCCCTCCCTCCCTCCCTCCCCCCCTCCCTCC
CTCCCTCTGACACTCCCTCTGACGCCCGCCTCCCTCCTTCCCTCGCTTTC
TCTTTCCCTCCCTCTGACACTCCCTTTGACGCCCCCCTCCCTCCGTCCCT
TCACCCCTCCTAGATAAAGCGTGCGTCCCGGGAGCGCGCCACAGCCGCCA
CCCGGCTGCAAGCCAAGTTGGAGGGGAAGGTAAAGGGGCTGCGGACGGAA
TGGGACGGGCGAATCGAAGAGCACTTTGACTGGATCGCAAAGGAGGTAGG
TAGGGAGGTAGGGAGGTAGGGAGGTAGGGAGGGAGGGAGAGGGGCAGGAG
GTTGGGGGCGAGGAAGAATAGACTGTGTCATACTCGAGGGGGTGCATTTC
TAATCCTCCCTCCCTCTCGCCTTCCCTTCCTTTCTCAGGCTCTTCCTCCT
CTGACCTCTCGCCTCCTCGAGGTCGAAGACAGCACGCGTCACTTCGCGCA
TTCCGTGCTTCCTCCTGCCATCGAGGCGACCCTTCTCCTGGAGGGAGGGA
GGGAGGCAGGGAGGGAGGGAGGGAGGGAGGGAGGGGTAGAGGCAATGAGA
AGGGCGTGGGAGACGGAGAAAAACAAAGTGATGAAACGGTGGGTGGGGGG
GAGAGAGGGAGGGAGGGAAGGAGGGAGGAAGAAGAATGAAGGTGGGATGC
ATTTCTTCCACTTTCCTTACGCATACCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTACCTCCCTCTTCTCCCTCACAACAGAGAGCAGCGG
ATCGAGCAGCGTCTGGCTGAGCACGTGGAGAAGACGGCTTCGGAGTTCGA
GAGAGAGACAGGCACAAGGCTCGGTGCGGAGGGAGGAAGGGAAGGAGGGA
CGGGTTGAATGAATACAAATATCATCGTCCATGCGTCCCTCATGTTTCGC
TCCCTTGCCTCCTCCCCTTCCTCCCTCCCCTCCTCCTTCCCTACCTTCTT
CCCTAGCTGCTCTTCGTGCCCTCGAGGCTGACATCCGCGCCCCTCAACTG
GAGCTCGTGGACGGAGAGGAAGGCTTTCAGCAGCAAGTCAAGACGACGCT
CAGAGGTGGGGAGGGAGGGAGGGAAAGAGAGGGGAGGGAGGAGGATTGTC
CTTGGTTCACGAATGATTCAGATTGACTTTCCCCGCCCTCGTTCCTTCAT
TCCTTCCTTCCTTCGTTTCTTCCTTCCCTCCCTCCCCCCTTCCTGCAGAG
CTGTACGACGGCGTGGCGATCGAGGCCCAGGCCCGTGAAGAGGAAGACTG
CCTCGTGCTTGACTCCATGCTGGAGTCCCAGAAGGCCCTGCAGAGAATCA
TTCTAGAAAACTACGGGGGAGGGAGGGGAGCAGTAGGAGGAGGAGGAGTA
GGAGTAGGAGGGGGCTCGTTCTTTTTGAGGCTCGAGTCGTGTGGGGAGGG
AAGGAGTCATGAGGAGGATGAGGAAGGGGTGGAGGAATGGGAGAGGTGAG
GGAAGAAGGGAAGAAGGGAAGGAGGGAAGGGCGAATGTATTTTAAGTCGG
GCCATGGACTGACCATGGTGGCTAGGTGGAGTTAGAAAGTGGATGCGTGC
GTTAGGCAGCACACGCACACGGAGGAACCAAACCAAAACAACAGCTTCTA
CGACGAAGGCAAGAAATGTAGATCGGAAGAATACACAGGGATAAAAGAAA
TAGCTGATTCGAACCCACCGCATTCACTTAAGAAGAAGGGGACTACTTTA
TTCAGGAAAGAAAGATGCACATGGGCCAGTCGCAGTGCGTCTCACACAGT
AGCC back to topCoding sequence (CDS) from alignment at chr18:859531..863534+ >NO18G02640.1 ID=NO18G02640.1|Name=NO18G02640.1|organism=Nannochloropsis oceanica|type=CDS|length=1164bp|location=Sequence derived from alignment at chr18:859531..863534+ (Nannochloropsis oceanica) ATGCAGCAGCAACAGCAGCATTACGCTCCCCCTTTTCCTTCGCACGGCCA GGGCAGTATTCACGTGCAATATCCCTCCGCTCCTTCGGATGCTTCGTTCG TGTCCTCCTACCCTGCCTCTAGCCTGCCCGTCATACCGGAAGCAGAGCGC GAGGAGAGCGAGGAGAGCTATTGGAGGCGAGCGAGAGAGGGAGGCAGGGT ACACTTAGGGGGACGCAAGATGATGCCGCAGCAGCAGGAAGATCACGGCT ACTTGACTTCCACCCACATGATTAATAAGCAAGAAGTGAATATCAACCAA CAACAACAGTCGCTGGCCCAGGAGGCGGCGACGAGGCAGAGGGAGATAGA GGAAGGGATGCAGGCATTACGAGGTCGCATCCAAGCCATCGACGACAAGA TAAAGCGTGCGTCCCGGGAGCGCGCCACAGCCGCCACCCGGCTGCAAGCC AAGTTGGAGGGGAAGGTAAAGGGGCTGCGGACGGAATGGGACGGGCGAAT CGAAGAGCACTTTGACTGGATCGCAAAGGAGGCTCTTCCTCCTCTGACCT CTCGCCTCCTCGAGGTCGAAGACAGCACGCGTCACTTCGCGCATTCCGTG CTTCCTCCTGCCATCGAGGCGACCCTTCTCCTGGAGGGAGGGAGGGAGGC AGGGAGGGAGGGAGGGAGGGAGGGAGGGGTAGAGGCAATGAGAAGGGCGT GGGAGACGGAGAAAAACAAAGTGATGAAACGAGAGCAGCGGATCGAGCAG CGTCTGGCTGAGCACGTGGAGAAGACGGCTTCGGAGTTCGAGAGAGAGAC AGGCACAAGGCTCGCTGCTCTTCGTGCCCTCGAGGCTGACATCCGCGCCC CTCAACTGGAGCTCGTGGACGGAGAGGAAGGCTTTCAGCAGCAAGTCAAG ACGACGCTCAGAGAGCTGTACGACGGCGTGGCGATCGAGGCCCAGGCCCG TGAAGAGGAAGACTGCCTCGTGCTTGACTCCATGCTGGAGTCCCAGAAGG CCCTGCAGAGAATCATTCTAGAAAACTACGGGGGAGGGAGGGGAGCAGTA GGAGGAGGAGGAGTAGGAGTAGGAGGGGGCTCGTTCTTTTTGAGGCTCGA GTCGTGTGGGGAGGGAAGGAGTCATGAGGAGGATGAGGAAGGGGTGGAGG AATGGGAGAGGTGA back to top
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