NO18G02640.1, NO18G02640.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G02640.1
Unique NameNO18G02640.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3010
Alignment locationchr18:859531..863534 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:859531..863534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO18G02640.1 vs.
Match: EWM23467.1 (hypothetical protein Naga_100651g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 134.4 bits (337), Expect = 7.400e-28
Identity = 95/185 (51.35%), Postives = 122/185 (65.95%), Query Frame = 0
Query:   11 PFP-SHGQGSIH----VQYPSA-----PSDASFVSSYPA---SSLPVIPEAEREESEESYWRRAREG---GRVHLGGRKMMPQQQEDHGYLTS--THMINKQEVNINQQQQSLAQEAATRQREIEEGMQALRGRIQAIDDKIKRASRERATAATRLQAKLEGKVKGLRTEWDGRIEEHFDWIAKE 178
            P P S+GQG  H     QYPS      P+ AS    YP+   SS+PVIPE ER ESEE    R R G   G     GR+  PQ  +D G+L S  +H INK EV+I QQQ+SLA+E A R+RE+EE +QAL  RI AID+KI+R +RERA+ A+RLQ K+  +V+GL+ EW+G++EE+FDWI KE
Sbjct:    6 PLPTSYGQGYAHSGQHTQYPSPAFPAFPTAASTSRPYPSTTFSSMPVIPEVER-ESEEDAAGRGRGGIYSGMAGDDGRR-KPQMYQD-GFLASSTSHTINKHEVSIAQQQRSLAEETAIRRREMEEEIQALHKRIYAIDEKIQRTARERASTASRLQQKIGSRVEGLQKEWEGKVEENFDWILKE 187          
The following BLAST results are available for this feature:
BLAST of NO18G02640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23467.17.400e-2851.35hypothetical protein Naga_100651g1, partial [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G02640NO18G02640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G02640.1NO18G02640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G02640.1.cds1NO18G02640.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02640.1.cds2NO18G02640.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02640.1.cds3NO18G02640.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02640.1.cds4NO18G02640.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02640.1.cds5NO18G02640.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02640.1.cds6NO18G02640.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02640.1.cds7NO18G02640.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02640.1.cds8NO18G02640.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G02640.1 ID=NO18G02640.1|Name=NO18G02640.1|organism=Nannochloropsis oceanica|type=mRNA|length=3010bp
TCATCGATGGACAAGCATGCGGAAGGAAAGGGTGATGGCTTGATTTATTC
TCCTTGGCATGCTGCAGCCTTTCTCTCTGCAGCATTTTGCGAAGTCTCTC
TCGAACAGCAACTGATGAGATATTTGATAGACAGATGCCTGAAGCCGCAA
TCAAGGCTGAAATCATCTTGTCTGGCATAGATCATACCACTTACAGGTTG
CAATGGCGTCATCAATGACGTACTCGCTTCAGTCTCTTCAATTTACTTAC
CCACTTCTCTCCGACCCGCACTGATTCCCACGTATCTCCGTGTCTACCTT
TGGATAAAAGTTGCTCTCGATGGGTATAACATTTGGGTTATTCTCCTCTA
CAGCCTCAACATGCGAGAGAAGCAGCAGACAAAACAGAAAGAAAGTCCTA
CGCCCAGTCTCGAGTGCTTCCGCTCTTTTCCTACACCCTCATCCTCTTGC
TACCCGCTCTTGGCTTGCTTCTTTGCTTTCCCGTTAACCAATATTTTGGG
AGCGTCTTGCAGGGAGGATGAGCCTTTCTCTCTTTCCCGGTCCTGCATTT
CGTCCGGTAGTATGCCTACCTCGGATTAGCGAACAATAAAGCAATTGAGA
AGAGGCGGGAGGAAAATTAGATTAAGAGAATAAGACAGCAGACGCAAAAG
GAAAAGATGAGATATGGAAAGCAGTAGAAAAGGAAAAAAATAAAAGAGAA
ACAGGGGAAAACTGGGTTCACCGATATTTTGCGGGGACAAGATCTCCAAT
CTACTCCCTCGACTATTCCTCCTTGGCCACACATGCGCACGAATATCCAA
TCCTGCTTGGTGAGGTCATAGTCTGGGGAAGGAAACTATAGCTGTGACAG
AGCTCCAGAAGGAGGTTGGCTTAATGACGAATTATTATACGCCTGAATGA
TTCGCGTACACACTCCCATTCCTAACCATCCATTGCCTCCCCGAAATACA
TGTCAATGTCCTAACCATCCATAGTCTCCCCGTAATATCTATCAATAAAT
ATAAAGACCCTATCAAATATTTCGATGTATTCAAGGGCTTAATCATGCTC
AATATGCTTAATTATCGAACATATTTGAAATCCTTCTTATTTTTTGTGAG
TGCCTGCGTCTTTATTTTGATGTGAGGAAAGTATGTCCCCAACAAACCCC
AAAAAAGATCCTTATGATGCTTGGTATTTGTGGAGCCGCTGCTTTATGGC
GCTGCTAGAGGATGGGCAAGAATGCCCCTCACCGCAACGGGCATCGTATC
GTCCCTGACATCATCAGACCACACACCTCATCCCACCCGGAGGAGGATGG
CTGAAACGCTTGCGCCCGTGCTGCCAACACAACCCTTATATTGCATGAGT
GTCACGCCCGCACTCAATTACAACACACACACACACACACATACATATTC
ATCTACATCTACACAGCGTGTGCAGACCTCCTCGACCGTCGTGCCCTTCT
TCTCCTCGTTTGAGCTCTCATCACTCAAGCATCGTCGCCAACCTCAACGC
CGCATCGCTCATACACACACGCGCCCAGGGAGGGAGCTGAGATGCAGCAG
CAACAGCAGCATTACGCTCCCCCTTTTCCTTCGCACGGCCAGGGCAGTAT
TCACGTGCAATATCCCTCCGCTCCTTCGGATGCTTCGTTCGTGTCCTCCT
ACCCTGCCTCTAGCCTGCCCGTCATACCGGAAGCAGAGCGCGAGGAGAGC
GAGGAGAGCTATTGGAGGCGAGCGAGAGAGGGAGGCAGGGTACACTTAGG
GGGACGCAAGATGATGCCGCAGCAGCAGGAAGATCACGGCTACTTGACTT
CCACCCACATGATTAATAAGCAAGAAGTGAATATCAACCAACAACAACAG
TCGCTGGCCCAGGAGGCGGCGACGAGGCAGAGGGAGATAGAGGAAGGGAT
GCAGGCATTACGAGGTCGCATCCAAGCCATCGACGACAAGATAAAGCGTG
CGTCCCGGGAGCGCGCCACAGCCGCCACCCGGCTGCAAGCCAAGTTGGAG
GGGAAGGTAAAGGGGCTGCGGACGGAATGGGACGGGCGAATCGAAGAGCA
CTTTGACTGGATCGCAAAGGAGGCTCTTCCTCCTCTGACCTCTCGCCTCC
TCGAGGTCGAAGACAGCACGCGTCACTTCGCGCATTCCGTGCTTCCTCCT
GCCATCGAGGCGACCCTTCTCCTGGAGGGAGGGAGGGAGGCAGGGAGGGA
GGGAGGGAGGGAGGGAGGGGTAGAGGCAATGAGAAGGGCGTGGGAGACGG
AGAAAAACAAAGTGATGAAACGAGAGCAGCGGATCGAGCAGCGTCTGGCT
GAGCACGTGGAGAAGACGGCTTCGGAGTTCGAGAGAGAGACAGGCACAAG
GCTCGCTGCTCTTCGTGCCCTCGAGGCTGACATCCGCGCCCCTCAACTGG
AGCTCGTGGACGGAGAGGAAGGCTTTCAGCAGCAAGTCAAGACGACGCTC
AGAGAGCTGTACGACGGCGTGGCGATCGAGGCCCAGGCCCGTGAAGAGGA
AGACTGCCTCGTGCTTGACTCCATGCTGGAGTCCCAGAAGGCCCTGCAGA
GAATCATTCTAGAAAACTACGGGGGAGGGAGGGGAGCAGTAGGAGGAGGA
GGAGTAGGAGTAGGAGGGGGCTCGTTCTTTTTGAGGCTCGAGTCGTGTGG
GGAGGGAAGGAGTCATGAGGAGGATGAGGAAGGGGTGGAGGAATGGGAGA
GGTGAGGGAAGAAGGGAAGAAGGGAAGGAGGGAAGGGCGAATGTATTTTA
AGTCGGGCCATGGACTGACCATGGTGGCTAGGTGGAGTTAGAAAGTGGAT
GCGTGCGTTAGGCAGCACACGCACACGGAGGAACCAAACCAAAACAACAG
CTTCTACGACGAAGGCAAGAAATGTAGATCGGAAGAATACACAGGGATAA
AAGAAATAGCTGATTCGAACCCACCGCATTCACTTAAGAAGAAGGGGACT
ACTTTATTCAGGAAAGAAAGATGCACATGGGCCAGTCGCAGTGCGTCTCA
CACAGTAGCC
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protein sequence of NO18G02640.1

>NO18G02640.1-protein ID=NO18G02640.1-protein|Name=NO18G02640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MQQQQQHYAPPFPSHGQGSIHVQYPSAPSDASFVSSYPASSLPVIPEAER
EESEESYWRRAREGGRVHLGGRKMMPQQQEDHGYLTSTHMINKQEVNINQ
QQQSLAQEAATRQREIEEGMQALRGRIQAIDDKIKRASRERATAATRLQA
KLEGKVKGLRTEWDGRIEEHFDWIAKEALPPLTSRLLEVEDSTRHFAHSV
LPPAIEATLLLEGGREAGREGGREGGVEAMRRAWETEKNKVMKREQRIEQ
RLAEHVEKTASEFERETGTRLAALRALEADIRAPQLELVDGEEGFQQQVK
TTLRELYDGVAIEAQAREEEDCLVLDSMLESQKALQRIILENYGGGRGAV
GGGGVGVGGGSFFLRLESCGEGRSHEEDEEGVEEWER*
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mRNA from alignment at chr18:859531..863534+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G02640.1 ID=NO18G02640.1|Name=NO18G02640.1|organism=Nannochloropsis oceanica|type=mRNA|length=4004bp|location=Sequence derived from alignment at chr18:859531..863534+ (Nannochloropsis oceanica)
TCATCGATGGACAAGCATGCGGAAGGAAAGGGTGATGGCTTGATTTATTC TCCTTGGCATGCTGCAGCCTTTCTCTCTGCAGCATTTTGCGAAGTCTCTC TCGAACAGCAACTGATGAGATATTTGATAGACAGATGCCTGAAGCCGCAA TCAAGGCTGAAATCATCTTGTCTGGCATAGATCATACCACTTACAGGTTG CAATGGCGTCATCAATGACGTACTCGCTTCAGTCTCTTCAATTTACTTAC CCACTTCTCTCCGACCCGCACTGATTCCCACGTATCTCCGTGTCTACCTT TGGATAAAAGTTGCTCTCGATGGGTATAACATTTGGGTTATTCTCCTCTA CAGCCTCAACATGCGAGAGAAGCAGCAGACAAAACAGAAAGAAAGTCCTA CGCCCAGTCTCGAGTGCTTCCGCTCTTTTCCTACACCCTCATCCTCTTGC TACCCGCTCTTGGCTTGCTTCTTTGCTTTCCCGTTAACCAATATTTTGGG AGCGTCTTGCAGGGAGGATGAGCCTTTCTCTCTTTCCCGGTCCTGCATTT CGTCCGGTAGTATGCCTACCTCGGATTAGCGAACAATAAAGCAATTGAGA AGAGGCGGGAGGAAAATTAGATTAAGAGAATAAGACAGCAGACGCAAAAG GAAAAGATGAGATATGGAAAGCAGTAGAAAAGGAAAAAAATAAAAGAGAA ACAGGGGAAAACTGGGTTCACCGATATTTTGCGGGGACAAGATCTCCAAT CTACTCCCTCGACTATTCCTCCTTGGCCACACATGCGCACGAATATCCAA TCCTGCTTGGTGAGGTCATAGTCTGGGGAAGGAAACTATAGCTGTGACAG AGCTCCAGAAGGAGGTTGGCTTAATGACGAATTATTATACGCCTGAATGA TTCGCGTACACACTCCCATTCCTAACCATCCATTGCCTCCCCGAAATACA TGTCAATGTCCTAACCATCCATAGTCTCCCCGTAATATCTATCAATAAAT ATAAAGACCCTATCAAATATTTCGATGTATTCAAGGGCTTAATCATGCTC AATATGCTTAATTATCGAACATATTTGAAATCCTTCTTATTTTTTGTGAG TGCCTGCGTCTTTATTTTGATGTGAGGAAAGTATGTCCCCAACAAACCCC AAAAAAGATCCTTATGATGCTTGGTATTTGTGGAGCCGCTGCTTTATGGC GCTGCTAGAGGATGGGCAAGAATGCCCCTCACCGCAACGGGCATCGTATC GTCCCTGACATCATCAGACCACACACCTCATCCCACCCGGAGGAGGATGG CTGAAACGCTTGCGCCCGTGCTGCCAACACAACCCTTATATTGCATGAGT GTCACGCCCGCACTCAATTACAACACACACACACACACACATACATATTC ATCTACATCTACACAGCGTGTGCAGACCTCCTCGACCGTCGTGCCCTTCT TCTCCTCGTTTGAGCTCTCATCACTCAAGCATCGTCGCCAACCTCAACGC CGCATCGCTCATACACACACGCGCCCAGGGAGGGAGCTGAGATGCAGCAG CAACAGCAGCATTACGCTCCCCCTTTTCCTTCGCACGGCCAGGGCAGTAT TCACGTGCAATATCCCTCCGCTCCTTCGGATGCTTCGTTCGTGTCCTCCT ACCCTGCCTCTAGCCTGCCCGTCATACCGGAAGCAGAGCGCGAGGAGAGC GAGGAGAGCTATTGGAGGCGAGCGAGAGAGGGAGGCAGGGTACACTTAGG GGGACGCAAGATGATGCCGCAGCAGCAGGAAGAGTGAGTTGTAGTGTGTG CTCTGTGTGAGGGTGGCTGTGGGTGCGTCTTCAACGTCATCTCCCTCCTC CCATGAATGACGCATGCATTATAAGCGCCCTTCTTTACGTCTCTTTCCTC ACTCTCCTCCCCTCTCTTCCGCCTTCCTACATTCCGATCACAGTCACGGC TACTTGACTTCCACCCACATGATTAATAAGCAAGAAGTGAATATCAACCA ACAACAACAGTCGCTGGCCCAGGAGGCGGCGACGAGGCAGAGGGAGATAG AGGAAGGGATGCAGGTAGGGAGAGAATGAAGCAGGGTGTGTGGAGGGTGC AAGGGCCAGGGTTGAGGATGATTTTTAACTCACGTTCGCAATAAATCTTG GTATTGTACACCAAAGGCATTACGAGGTCGCATCCAAGCCATCGACGACA AGGTACGTCCTTCAGGCCCTCCCTCCCTCCCTCCCTCCCCCCCTCCCTCC CTCCCTCTGACACTCCCTCTGACGCCCGCCTCCCTCCTTCCCTCGCTTTC TCTTTCCCTCCCTCTGACACTCCCTTTGACGCCCCCCTCCCTCCGTCCCT TCACCCCTCCTAGATAAAGCGTGCGTCCCGGGAGCGCGCCACAGCCGCCA CCCGGCTGCAAGCCAAGTTGGAGGGGAAGGTAAAGGGGCTGCGGACGGAA TGGGACGGGCGAATCGAAGAGCACTTTGACTGGATCGCAAAGGAGGTAGG TAGGGAGGTAGGGAGGTAGGGAGGTAGGGAGGGAGGGAGAGGGGCAGGAG GTTGGGGGCGAGGAAGAATAGACTGTGTCATACTCGAGGGGGTGCATTTC TAATCCTCCCTCCCTCTCGCCTTCCCTTCCTTTCTCAGGCTCTTCCTCCT CTGACCTCTCGCCTCCTCGAGGTCGAAGACAGCACGCGTCACTTCGCGCA TTCCGTGCTTCCTCCTGCCATCGAGGCGACCCTTCTCCTGGAGGGAGGGA GGGAGGCAGGGAGGGAGGGAGGGAGGGAGGGAGGGGTAGAGGCAATGAGA AGGGCGTGGGAGACGGAGAAAAACAAAGTGATGAAACGGTGGGTGGGGGG GAGAGAGGGAGGGAGGGAAGGAGGGAGGAAGAAGAATGAAGGTGGGATGC ATTTCTTCCACTTTCCTTACGCATACCCTCCCTCCCTCCCTCCCTCCCTC CCTCCCTCCCTCCCTACCTCCCTCTTCTCCCTCACAACAGAGAGCAGCGG ATCGAGCAGCGTCTGGCTGAGCACGTGGAGAAGACGGCTTCGGAGTTCGA GAGAGAGACAGGCACAAGGCTCGGTGCGGAGGGAGGAAGGGAAGGAGGGA CGGGTTGAATGAATACAAATATCATCGTCCATGCGTCCCTCATGTTTCGC TCCCTTGCCTCCTCCCCTTCCTCCCTCCCCTCCTCCTTCCCTACCTTCTT CCCTAGCTGCTCTTCGTGCCCTCGAGGCTGACATCCGCGCCCCTCAACTG GAGCTCGTGGACGGAGAGGAAGGCTTTCAGCAGCAAGTCAAGACGACGCT CAGAGGTGGGGAGGGAGGGAGGGAAAGAGAGGGGAGGGAGGAGGATTGTC CTTGGTTCACGAATGATTCAGATTGACTTTCCCCGCCCTCGTTCCTTCAT TCCTTCCTTCCTTCGTTTCTTCCTTCCCTCCCTCCCCCCTTCCTGCAGAG CTGTACGACGGCGTGGCGATCGAGGCCCAGGCCCGTGAAGAGGAAGACTG CCTCGTGCTTGACTCCATGCTGGAGTCCCAGAAGGCCCTGCAGAGAATCA TTCTAGAAAACTACGGGGGAGGGAGGGGAGCAGTAGGAGGAGGAGGAGTA GGAGTAGGAGGGGGCTCGTTCTTTTTGAGGCTCGAGTCGTGTGGGGAGGG AAGGAGTCATGAGGAGGATGAGGAAGGGGTGGAGGAATGGGAGAGGTGAG GGAAGAAGGGAAGAAGGGAAGGAGGGAAGGGCGAATGTATTTTAAGTCGG GCCATGGACTGACCATGGTGGCTAGGTGGAGTTAGAAAGTGGATGCGTGC GTTAGGCAGCACACGCACACGGAGGAACCAAACCAAAACAACAGCTTCTA CGACGAAGGCAAGAAATGTAGATCGGAAGAATACACAGGGATAAAAGAAA TAGCTGATTCGAACCCACCGCATTCACTTAAGAAGAAGGGGACTACTTTA TTCAGGAAAGAAAGATGCACATGGGCCAGTCGCAGTGCGTCTCACACAGT AGCC
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Coding sequence (CDS) from alignment at chr18:859531..863534+

>NO18G02640.1 ID=NO18G02640.1|Name=NO18G02640.1|organism=Nannochloropsis oceanica|type=CDS|length=1164bp|location=Sequence derived from alignment at chr18:859531..863534+ (Nannochloropsis oceanica)
ATGCAGCAGCAACAGCAGCATTACGCTCCCCCTTTTCCTTCGCACGGCCA
GGGCAGTATTCACGTGCAATATCCCTCCGCTCCTTCGGATGCTTCGTTCG
TGTCCTCCTACCCTGCCTCTAGCCTGCCCGTCATACCGGAAGCAGAGCGC
GAGGAGAGCGAGGAGAGCTATTGGAGGCGAGCGAGAGAGGGAGGCAGGGT
ACACTTAGGGGGACGCAAGATGATGCCGCAGCAGCAGGAAGATCACGGCT
ACTTGACTTCCACCCACATGATTAATAAGCAAGAAGTGAATATCAACCAA
CAACAACAGTCGCTGGCCCAGGAGGCGGCGACGAGGCAGAGGGAGATAGA
GGAAGGGATGCAGGCATTACGAGGTCGCATCCAAGCCATCGACGACAAGA
TAAAGCGTGCGTCCCGGGAGCGCGCCACAGCCGCCACCCGGCTGCAAGCC
AAGTTGGAGGGGAAGGTAAAGGGGCTGCGGACGGAATGGGACGGGCGAAT
CGAAGAGCACTTTGACTGGATCGCAAAGGAGGCTCTTCCTCCTCTGACCT
CTCGCCTCCTCGAGGTCGAAGACAGCACGCGTCACTTCGCGCATTCCGTG
CTTCCTCCTGCCATCGAGGCGACCCTTCTCCTGGAGGGAGGGAGGGAGGC
AGGGAGGGAGGGAGGGAGGGAGGGAGGGGTAGAGGCAATGAGAAGGGCGT
GGGAGACGGAGAAAAACAAAGTGATGAAACGAGAGCAGCGGATCGAGCAG
CGTCTGGCTGAGCACGTGGAGAAGACGGCTTCGGAGTTCGAGAGAGAGAC
AGGCACAAGGCTCGCTGCTCTTCGTGCCCTCGAGGCTGACATCCGCGCCC
CTCAACTGGAGCTCGTGGACGGAGAGGAAGGCTTTCAGCAGCAAGTCAAG
ACGACGCTCAGAGAGCTGTACGACGGCGTGGCGATCGAGGCCCAGGCCCG
TGAAGAGGAAGACTGCCTCGTGCTTGACTCCATGCTGGAGTCCCAGAAGG
CCCTGCAGAGAATCATTCTAGAAAACTACGGGGGAGGGAGGGGAGCAGTA
GGAGGAGGAGGAGTAGGAGTAGGAGGGGGCTCGTTCTTTTTGAGGCTCGA
GTCGTGTGGGGAGGGAAGGAGTCATGAGGAGGATGAGGAAGGGGTGGAGG
AATGGGAGAGGTGA
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Synonyms
Publications