NO18G02640, NO18G02640 (gene) Nannochloropsis oceanica

Overview
NameNO18G02640
Unique NameNO18G02640
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4004
Alignment locationchr18:859531..863534 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:859531..863534 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO18G02640 vs. NCBI_GenBank
Match: EWM23467.1 (hypothetical protein Naga_100651g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 134.4 bits (337), Expect = 7.400e-28
Identity = 95/185 (51.35%), Postives = 122/185 (65.95%), Query Frame = 0 
Query:   11 PFP-SHGQG----SIHVQYPSA-----PSDASFVSSYPA---SSLPVIPEAEREESEESYWRRAREG---GRVHLGGRKMMPQQQEDHGYLTS--THMINKQEVNINQQQQSLAQEAATRQREIEEGMQALRGRIQAIDDKIKRASRERATAATRLQAKLEGKVKGLRTEWDGRIEEHFDWIAKE 178
            P P S+GQG      H QYPS      P+ AS    YP+   SS+PVIPE ER ESEE    R R G   G     GR+  PQ  +D G+L S  +H INK EV+I QQQ+SLA+E A R+RE+EE +QAL  RI AID+KI+R +RERA+ A+RLQ K+  +V+GL+ EW+G++EE+FDWI KE
Sbjct:    6 PLPTSYGQGYAHSGQHTQYPSPAFPAFPTAASTSRPYPSTTFSSMPVIPEVER-ESEEDAAGRGRGGIYSGMAGDDGRR-KPQMYQD-GFLASSTSHTINKHEVSIAQQQRSLAEETAIRRREMEEEIQALHKRIYAIDEKIQRTARERASTASRLQQKIGSRVEGLQKEWEGKVEENFDWILKE 187
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BLAST of NO18G02640 vs. NCBI_GenBank
Match: XP_005854762.1 (hypothetical protein NGA_0380100 [Nannochloropsis gaditana CCMP526] >EKU21597.1 hypothetical protein NGA_0380100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 98.2 bits (243), Expect = 5.900e-17
Identity = 49/72 (68.06%), Postives = 58/72 (80.56%), Query Frame = 0 
Query:  274 LRALEADIRAPQLELVDGEEGFQQQVKTTLRELYDGVAIEAQAREEEDCLVLDSMLESQKALQRIILENYGG 346
            L  +E  +R+PQ   ++  E FQ  VK TLREL DG+AIEAQAREEEDCLVLD+MLE+QK+LQRIILENYGG
Sbjct:   87 LDGIETAVRSPQESFLEEMESFQHHVKRTLRELCDGIAIEAQAREEEDCLVLDAMLEAQKSLQRIILENYGG 158
The following BLAST results are available for this feature:
BLAST of NO18G02640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Position :
0
Zoom :
x 1
5001000150020002500300035004000SequenceEWM23467.1XP_005854762.1
Match NameE-valueIdentityDescription
EWM23467.17.400e-2851.35hypothetical protein Naga_100651g1, partial [Nanno... [more]
XP_005854762.15.900e-1768.06hypothetical protein NGA_0380100 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL011nonsL011Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL010nonsL010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR094ncniR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR042ngnoR042Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007332NSK007332Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G02640.1NO18G02640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100651g1gene6986Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G02640.1NO18G02640.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G02640 ID=NO18G02640|Name=NO18G02640|organism=Nannochloropsis oceanica|type=gene|length=4004bp
TCATCGATGGACAAGCATGCGGAAGGAAAGGGTGATGGCTTGATTTATTC
TCCTTGGCATGCTGCAGCCTTTCTCTCTGCAGCATTTTGCGAAGTCTCTC
TCGAACAGCAACTGATGAGATATTTGATAGACAGATGCCTGAAGCCGCAA
TCAAGGCTGAAATCATCTTGTCTGGCATAGATCATACCACTTACAGGTTG
CAATGGCGTCATCAATGACGTACTCGCTTCAGTCTCTTCAATTTACTTAC
CCACTTCTCTCCGACCCGCACTGATTCCCACGTATCTCCGTGTCTACCTT
TGGATAAAAGTTGCTCTCGATGGGTATAACATTTGGGTTATTCTCCTCTA
CAGCCTCAACATGCGAGAGAAGCAGCAGACAAAACAGAAAGAAAGTCCTA
CGCCCAGTCTCGAGTGCTTCCGCTCTTTTCCTACACCCTCATCCTCTTGC
TACCCGCTCTTGGCTTGCTTCTTTGCTTTCCCGTTAACCAATATTTTGGG
AGCGTCTTGCAGGGAGGATGAGCCTTTCTCTCTTTCCCGGTCCTGCATTT
CGTCCGGTAGTATGCCTACCTCGGATTAGCGAACAATAAAGCAATTGAGA
AGAGGCGGGAGGAAAATTAGATTAAGAGAATAAGACAGCAGACGCAAAAG
GAAAAGATGAGATATGGAAAGCAGTAGAAAAGGAAAAAAATAAAAGAGAA
ACAGGGGAAAACTGGGTTCACCGATATTTTGCGGGGACAAGATCTCCAAT
CTACTCCCTCGACTATTCCTCCTTGGCCACACATGCGCACGAATATCCAA
TCCTGCTTGGTGAGGTCATAGTCTGGGGAAGGAAACTATAGCTGTGACAG
AGCTCCAGAAGGAGGTTGGCTTAATGACGAATTATTATACGCCTGAATGA
TTCGCGTACACACTCCCATTCCTAACCATCCATTGCCTCCCCGAAATACA
TGTCAATGTCCTAACCATCCATAGTCTCCCCGTAATATCTATCAATAAAT
ATAAAGACCCTATCAAATATTTCGATGTATTCAAGGGCTTAATCATGCTC
AATATGCTTAATTATCGAACATATTTGAAATCCTTCTTATTTTTTGTGAG
TGCCTGCGTCTTTATTTTGATGTGAGGAAAGTATGTCCCCAACAAACCCC
AAAAAAGATCCTTATGATGCTTGGTATTTGTGGAGCCGCTGCTTTATGGC
GCTGCTAGAGGATGGGCAAGAATGCCCCTCACCGCAACGGGCATCGTATC
GTCCCTGACATCATCAGACCACACACCTCATCCCACCCGGAGGAGGATGG
CTGAAACGCTTGCGCCCGTGCTGCCAACACAACCCTTATATTGCATGAGT
GTCACGCCCGCACTCAATTACAACACACACACACACACACATACATATTC
ATCTACATCTACACAGCGTGTGCAGACCTCCTCGACCGTCGTGCCCTTCT
TCTCCTCGTTTGAGCTCTCATCACTCAAGCATCGTCGCCAACCTCAACGC
CGCATCGCTCATACACACACGCGCCCAGGGAGGGAGCTGAGATGCAGCAG
CAACAGCAGCATTACGCTCCCCCTTTTCCTTCGCACGGCCAGGGCAGTAT
TCACGTGCAATATCCCTCCGCTCCTTCGGATGCTTCGTTCGTGTCCTCCT
ACCCTGCCTCTAGCCTGCCCGTCATACCGGAAGCAGAGCGCGAGGAGAGC
GAGGAGAGCTATTGGAGGCGAGCGAGAGAGGGAGGCAGGGTACACTTAGG
GGGACGCAAGATGATGCCGCAGCAGCAGGAAGAgtgagttgtagtgtgtg
ctctgtgtgagggtggctgtgggtgcgtcttcaacgtcatctccctcctc
ccatgaatgacgcatgcattataagcgcccttctttacgtctctttcctc
actctcctcccctctcttccgccttcctacattccgatcacagTCACGGC
TACTTGACTTCCACCCACATGATTAATAAGCAAGAAGTGAATATCAACCA
ACAACAACAGTCGCTGGCCCAGGAGGCGGCGACGAGGCAGAGGGAGATAG
AGGAAGGGATGCAGgtagggagagaatgaagcagggtgtgtggagggtgc
aagggccagggttgaggatgatttttaactcacgttcgcaataaatcttg
gtattgtacaccaaagGCATTACGAGGTCGCATCCAAGCCATCGACGACA
AGgtacgtccttcaggccctccctccctccctccctccccccctccctcc
ctccctctgacactccctctgacgcccgcctccctccttccctcgctttc
tctttccctccctctgacactccctttgacgcccccctccctccgtccct
tcacccctcctagATAAAGCGTGCGTCCCGGGAGCGCGCCACAGCCGCCA
CCCGGCTGCAAGCCAAGTTGGAGGGGAAGGTAAAGGGGCTGCGGACGGAA
TGGGACGGGCGAATCGAAGAGCACTTTGACTGGATCGCAAAGGAGgtagg
tagggaggtagggaggtagggaggtagggagggagggagaggggcaggag
gttgggggcgaggaagaatagactgtgtcatactcgagggggtgcatttc
taatcctccctccctctcgccttcccttcctttctcagGCTCTTCCTCCT
CTGACCTCTCGCCTCCTCGAGGTCGAAGACAGCACGCGTCACTTCGCGCA
TTCCGTGCTTCCTCCTGCCATCGAGGCGACCCTTCTCCTGGAGGGAGGGA
GGGAGGCAGGGAGGGAGGGAGGGAGGGAGGGAGGGGTAGAGGCAATGAGA
AGGGCGTGGGAGACGGAGAAAAACAAAGTGATGAAACGgtgggtgggggg
gagagagggagggagggaaggagggaggaagaagaatgaaggtgggatgc
atttcttccactttccttacgcataccctccctccctccctccctccctc
cctccctccctccctacctccctcttctccctcacaacagAGAGCAGCGG
ATCGAGCAGCGTCTGGCTGAGCACGTGGAGAAGACGGCTTCGGAGTTCGA
GAGAGAGACAGGCACAAGGCTCGgtgcggagggaggaagggaaggaggga
cgggttgaatgaatacaaatatcatcgtccatgcgtccctcatgtttcgc
tcccttgcctcctccccttcctccctcccctcctccttccctaccttctt
ccctagCTGCTCTTCGTGCCCTCGAGGCTGACATCCGCGCCCCTCAACTG
GAGCTCGTGGACGGAGAGGAAGGCTTTCAGCAGCAAGTCAAGACGACGCT
CAGAGgtggggagggagggagggaaagagaggggagggaggaggattgtc
cttggttcacgaatgattcagattgactttccccgccctcgttccttcat
tccttccttccttcgtttcttccttccctccctccccccttcctgcagAG
CTGTACGACGGCGTGGCGATCGAGGCCCAGGCCCGTGAAGAGGAAGACTG
CCTCGTGCTTGACTCCATGCTGGAGTCCCAGAAGGCCCTGCAGAGAATCA
TTCTAGAAAACTACGGGGGAGGGAGGGGAGCAGTAGGAGGAGGAGGAGTA
GGAGTAGGAGGGGGCTCGTTCTTTTTGAGGCTCGAGTCGTGTGGGGAGGG
AAGGAGTCATGAGGAGGATGAGGAAGGGGTGGAGGAATGGGAGAGGTGAG
GGAAGAAGGGAAGAAGGGAAGGAGGGAAGGGCGAATGTATTTTAAGTCGG
GCCATGGACTGACCATGGTGGCTAGGTGGAGTTAGAAAGTGGATGCGTGC
GTTAGGCAGCACACGCACACGGAGGAACCAAACCAAAACAACAGCTTCTA
CGACGAAGGCAAGAAATGTAGATCGGAAGAATACACAGGGATAAAAGAAA
TAGCTGATTCGAACCCACCGCATTCACTTAAGAAGAAGGGGACTACTTTA
TTCAGGAAAGAAAGATGCACATGGGCCAGTCGCAGTGCGTCTCACACAGT
AGCC
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protein sequence of NO18G02640.1

>NO18G02640.1-protein ID=NO18G02640.1-protein|Name=NO18G02640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MQQQQQHYAPPFPSHGQGSIHVQYPSAPSDASFVSSYPASSLPVIPEAER
EESEESYWRRAREGGRVHLGGRKMMPQQQEDHGYLTSTHMINKQEVNINQ
QQQSLAQEAATRQREIEEGMQALRGRIQAIDDKIKRASRERATAATRLQA
KLEGKVKGLRTEWDGRIEEHFDWIAKEALPPLTSRLLEVEDSTRHFAHSV
LPPAIEATLLLEGGREAGREGGREGGVEAMRRAWETEKNKVMKREQRIEQ
RLAEHVEKTASEFERETGTRLAALRALEADIRAPQLELVDGEEGFQQQVK
TTLRELYDGVAIEAQAREEEDCLVLDSMLESQKALQRIILENYGGGRGAV
GGGGVGVGGGSFFLRLESCGEGRSHEEDEEGVEEWER*
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Synonyms
Publications