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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr18 | genome | chr18:831583..833729 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO18G02550.1 vs.
Match: XP_005854650.1 (hypothetical protein NGA_0195700 [Nannochloropsis gaditana CCMP526]; EKU21707.1 hypothetical protein NGA_0195700 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 247.7 bits (631), Expect = 4.600e-62 Identity = 114/195 (58.46%), Postives = 147/195 (75.38%), Query Frame = 0
Query: 103 MLTNKAHVEEMKETWSKPDILRFLMDNTPFFKVIKPLRMLMDKEEITPQDGLNAVGIFKDAMIKVLDTIESVRSPEGMAKYMFDYSKLQDERWVIMLARMQRGDKTVQVEIQQYVVDRELGNLIDLDAMGFNGEEPEYIKMVRRTVKNQEPGLWEAVLKEDQLARKYMEEPTAVIKEIQDLTSEYARNIEGMANL 298
MLTNKAHV+E+K TWS P + RFL D TPF K KPLR L KE +TPQDG++AV FK+AM+KVL TIE+VR PEGMA MF+YS LQD WV ++AR+Q G+K Q+E+QQY++DRELG LIDL+ MGF+G+EP +K R TV+ +EP LW+++ ED +ARKYME P V+K++ DLTSE N++G L
Sbjct: 1 MLTNKAHVDELKATWSDPVVFRFLRDQTPFLKAFKPLRPLFSKEALTPQDGVDAVETFKNAMLKVLATIEAVRDPEGMATLMFNYSNLQDPEWVSLIARLQAGEKEAQLELQQYILDRELGGLIDLNEMGFDGQEPSILKEARETVQREEPELWDSIFSEDPIARKYMEAPETVLKDVMDLTSECETNLKGKTTL 195
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO18G02550.1 ID=NO18G02550.1|Name=NO18G02550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1318bp CTAATTTCTGAATCTGAGGGCAGTGCTTGTTGTTAAGGGAGCCACCTCTG ACATTAGCCCCAAAACATTTCCCTGTTATCCAGGTCGCACATACACTTAT CATCGACGGGGAAATTTCCACCTAACCCAACCGTGAAAACACTACAGATA TTGTTGTATGTCAGTAAGGTCGTTTCCCTCTCCTCCCTCTCCTCTTTCTC TTTTTTGTTCGTGAAGTCAGCTGGTCTTACCCTCTCTCCCGCTAACCTTT CCCCCCCGCTTCGCCCTCTTACTACCAAATAGAACTGTCATGCGTTGTTT TTCCCTCCTCCTCCTCTTCTTGAGCGTGACAAGGTCGACAGCCACTGTCA AGAAGGCCGAGATTTTCAACACTCTCGCTAAGCAGCAACGATATCTGCAA GGCGCACAAGACGTGGAGGCAGCAGTGGAAGAAACAGAGATAGACCACAG AGAGCTGGACCCGCCACCATTAGGAAGCGCCAATGGTGACTTTTCCGTGT TGTTCGAGTCTTTAACAACCCCCTTGGTAGACTGGCAGTGGGAGCTGGCC GAACGGGCCTTTGCGGGTGACATTTTCGGGGTGCTCAAGGACAGCATGCT CACTAACAAGGCGCATGTGGAGGAGATGAAGGAGACCTGGTCCAAGCCTG ATATTCTGAGGTTTCTGATGGACAACACTCCTTTTTTTAAGGTCATCAAA CCCCTCCGCATGTTAATGGATAAGGAGGAGATTACGCCCCAAGATGGCCT GAACGCCGTCGGCATATTCAAGGACGCCATGATCAAGGTGTTGGACACTA TTGAGTCCGTCCGCAGCCCAGAGGGCATGGCCAAGTACATGTTCGATTAC AGCAAACTGCAGGACGAAAGATGGGTAATCATGCTCGCCCGTATGCAGAG AGGCGATAAGACCGTGCAGGTCGAGATCCAGCAGTATGTCGTCGACAGGG AGCTGGGAAACTTGATCGATCTGGACGCCATGGGCTTCAATGGCGAGGAA CCCGAGTACATAAAGATGGTTCGCCGCACGGTCAAGAACCAAGAGCCGGG CCTGTGGGAGGCTGTCCTGAAGGAGGATCAGCTGGCGAGGAAGTATATGG AGGAGCCCACGGCAGTGATCAAAGAAATTCAAGATTTGACCTCGGAGTAT GCGCGGAACATCGAGGGGATGGCGAATCTCTAAGGAAGGAGGAGAGGAAA AGGGGAGGTAGGAGGGAGGGGTATGGCTCTGGCCAGTTCGGAAACAGAGG GAGTCGGGGCTACGCTAGAGCCCTCCCGCACCCCCACCAAGCGCTTCGAT CTATAGGGAAGATTCGGA back to topprotein sequence of NO18G02550.1 >NO18G02550.1-protein ID=NO18G02550.1-protein|Name=NO18G02550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp MRCFSLLLLFLSVTRSTATVKKAEIFNTLAKQQRYLQGAQDVEAAVEETE IDHRELDPPPLGSANGDFSVLFESLTTPLVDWQWELAERAFAGDIFGVLK DSMLTNKAHVEEMKETWSKPDILRFLMDNTPFFKVIKPLRMLMDKEEITP QDGLNAVGIFKDAMIKVLDTIESVRSPEGMAKYMFDYSKLQDERWVIMLA RMQRGDKTVQVEIQQYVVDRELGNLIDLDAMGFNGEEPEYIKMVRRTVKN QEPGLWEAVLKEDQLARKYMEEPTAVIKEIQDLTSEYARNIEGMANL* back to topmRNA from alignment at chr18:831583..833729- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO18G02550.1 ID=NO18G02550.1|Name=NO18G02550.1|organism=Nannochloropsis oceanica|type=mRNA|length=2147bp|location=Sequence derived from alignment at chr18:831583..833729- (Nannochloropsis oceanica) CTAATTTCTGAATCTGAGGGCAGTGCTTGTTGTTAAGGGAGCCACCTCTG
ACATTAGCCCCAAAACATTTCCCTGTTATCCAGGTCGCACATACACTTAT
CATCGACGGGGAAATTTCCACCTAACCCAACCGTGAAAACACTACAGATA
TTGTTGTATGTCAGTAAGGTCGTTTCCCTCTCCTCCCTCTCCTCTTTCTC
TTTTTTGTTCGTGAAGTCAGCTGGTCTTACCCTCTCTCCCGCTAACCTTT
CCCCCCCGCTTCGCCCTCTTACTACCAAATAGAACTGTCATGCGTTGTTT
TTCCCTCCTCCTCCTCTTCTTGAGCGTGACAAGGTCGACAGCCACTGTCA
AGAAGGCCGAGATTTTCAACACTCTCGCTAAGCAGCAACGATATCTGCAA
GGCGCACAAGACGTGGAGGCAGCAGTGGAAGAAACAGAGATAGACCACAG
AGAGCTGGACCCGCCACCATTAGGAAGCGCCAATGGTGACTTTTCCGTGT
TGTTCGAGTCTTTAACAACCCCCTTGGTAGACTGGCAGTGGGAGCTGGCC
GAACGGGCCTTTGCGGGTGACATTTTCGGGGTGCTCAAGGACAGCATGCT
CACTAACAAGGCGCATGTGGAGGAGATGAAGGAGACCTGGTCCAAGCCTG
ATATTCTGAGGTTTCTGATGGACAACACTCCTTTTTTTAAGGTCATCAAA
CCCCTCCGCATGTTAATGGATAAGGAGGAGATTACGCCCCAAGATGTGAG
GAGAAGGACAGCTTGAGGGAGTCCACAGCATCCCTAAGCCCGCGTGCAAT
CTGACTAAAACTCTCACCTATCCCTCCCTCCTCCCTCCCTACCTCTTTCT
TCGACATATTCAGGGCCTGAACGCCGTCGGCATATTCAAGGACGCCATGA
TCAAGGTGTTGGACACTATTGAGTCCGTCCGCAGCCCAGAGGGCATGGCC
AAGTACATGTTCGATTACAGCAAACTGCAGGTACGCTTTCCTCTTTCCCT
GCATCTCCTCTCTCTCTCTCTCTGTCTTTCTCTCTCTCTCTCTCTCTCTC
TCTCTGTCTTTCTCTACTTCTGTCTTTCTCTCTCTCTCTCTCTCTGTCTT
TCTCTACTTCTGTCTTTCTCTCTCTATGTCTCTGTCTGTGTCTCTGTCTC
TCTGTCTCTCTGGCTCTCTGGCTCTCTGTCTCTCTGTTTCTCTATCTCTG
CCTTTCTCTCTCTCTCTCTTTTTCTCTCTCTCTCGCTCTGTGTCTCTGAT
TCTCTCCCTCTGTTTGTCTTTCTCTCTCTGTCTCTCTCTCTCTCTGTCTG
TCTCTCTCTCTGTCTCTCTCTCTGTCTCTATCTCTCTCTCTCACTCTAAC
TCTCCCCCTCCCTCCCTCCCCCTCCCTCTCTCCCCCTCATCCCTTCCCCC
CGCTCCATTTTAATGTCCTGCTTCTGTGCTGTCGCTTCTTGTTGCGGCAA
CATCACGTCAACCATCATGCATGTACTTCCCTATTTCCGTCTCGTCTGAT
TGTTTTGGTCATTCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCTC
AGGACGAAAGATGGGTAATCATGCTCGCCCGTATGCAGAGAGGCGATAAG
ACCGTGCAGGTCGAGATCCAGCAGTATGTCGTCGACAGGGAGCTGGGAAA
CTGTACGTGACGAGGGAATGGAGGACAGAGGAAGCGCTTGGTGGGGGTGC
GGGAGGGCTCTAGCGTAGCCCCGACTCCCTCTGTTTCCGAACTGGCCAGA
GCCTCACCCCTCCTCCCCCCTCCCCCTCTTTCCTTCGTGAGTGATCGATC
TGGACGCCATGGGCTTCAATGGCGAGGAACCCGAGTACATAAAGATGGTT
CGCCGCACGGTCAAGAACCAAGAGCCGGGCCTGTGGGAGGCTGTCCTGAA
GGAGGATCAGCTGGCGAGGAAGTATATGGAGGAGCCCACGGCAGTGATCA
AAGAAATTCAAGATTTGACCTCGGAGTATGCGCGGAACATCGAGGGGATG
GCGAATCTCTAAGGAAGGAGGAGAGGAAAAGGGGAGGTAGGAGGGAGGGG
TATGGCTCTGGCCAGTTCGGAAACAGAGGGAGTCGGGGCTACGCTAGAGC
CCTCCCGCACCCCCACCAAGCGCTTCGATCTATAGGGAAGATTCGGA back to topCoding sequence (CDS) from alignment at chr18:831583..833729- >NO18G02550.1 ID=NO18G02550.1|Name=NO18G02550.1|organism=Nannochloropsis oceanica|type=CDS|length=894bp|location=Sequence derived from alignment at chr18:831583..833729- (Nannochloropsis oceanica) ATGCGTTGTTTTTCCCTCCTCCTCCTCTTCTTGAGCGTGACAAGGTCGAC AGCCACTGTCAAGAAGGCCGAGATTTTCAACACTCTCGCTAAGCAGCAAC GATATCTGCAAGGCGCACAAGACGTGGAGGCAGCAGTGGAAGAAACAGAG ATAGACCACAGAGAGCTGGACCCGCCACCATTAGGAAGCGCCAATGGTGA CTTTTCCGTGTTGTTCGAGTCTTTAACAACCCCCTTGGTAGACTGGCAGT GGGAGCTGGCCGAACGGGCCTTTGCGGGTGACATTTTCGGGGTGCTCAAG GACAGCATGCTCACTAACAAGGCGCATGTGGAGGAGATGAAGGAGACCTG GTCCAAGCCTGATATTCTGAGGTTTCTGATGGACAACACTCCTTTTTTTA AGGTCATCAAACCCCTCCGCATGTTAATGGATAAGGAGGAGATTACGCCC CAAGATGGCCTGAACGCCGTCGGCATATTCAAGGACGCCATGATCAAGGT GTTGGACACTATTGAGTCCGTCCGCAGCCCAGAGGGCATGGCCAAGTACA TGTTCGATTACAGCAAACTGCAGGACGAAAGATGGGTAATCATGCTCGCC CGTATGCAGAGAGGCGATAAGACCGTGCAGGTCGAGATCCAGCAGTATGT CGTCGACAGGGAGCTGGGAAACTTGATCGATCTGGACGCCATGGGCTTCA ATGGCGAGGAACCCGAGTACATAAAGATGGTTCGCCGCACGGTCAAGAAC CAAGAGCCGGGCCTGTGGGAGGCTGTCCTGAAGGAGGATCAGCTGGCGAG GAAGTATATGGAGGAGCCCACGGCAGTGATCAAAGAAATTCAAGATTTGA CCTCGGAGTATGCGCGGAACATCGAGGGGATGGCGAATCTCTAA back to top
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