NO18G02490, NO18G02490 (gene) Nannochloropsis oceanica

Overview
NameNO18G02490
Unique NameNO18G02490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1593
Alignment locationchr18:808296..809888 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:808296..809888 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Homology
The following BLAST results are available for this feature:
BLAST of NO18G02490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G02490.1NO18G02490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G02490.1NO18G02490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G02490 ID=NO18G02490|Name=NO18G02490|organism=Nannochloropsis oceanica|type=gene|length=1593bp
ATGCTGAACCGCGCGATCACCAAATCCCTGGGACATGGGATCGATGAGGG
CGCGGGAGTCCAGGGGGAGGAGGAGAAGAAGGACAACGAGGCGCCGCCCG
GTGGCGGGGCCTTTCGGTCTGGCCGCGACCTGCTCCACTCCATTCGCAAG
ATCGTCGTTTCTATCTCTAAGTCACCCCTTACAAAGgtgcgcggtttctg
tacgttggcgttttcattgtcgtggtgtatatttggtgtttgggcgggat
gtagataccacaatctcgcacaatgatacatttacggactatacagaaag
ttatataagttttttgctccttttacttttttggggttttaatcaccata
acgagccttgtcaccggcaaaaagacatttcctactatcatattttgagc
accaaaataagCCCGCCCCGCATGACGGGGAAGCTGCCGGCAACCAACAG
ATGGAGGTCACTCAGGCGCAGCTGGAGATGTACGGGAAGCAACTGGAGCT
GAAGAACACGGCGCCGAACCGCTGGTCTTCTGCTGTCATGGTTTTCGAGC
GCATACTAGAGTCTTGGACGGGTGTCTTCCGGGGGCTCTTCTTGCGCTCC
AACGCCCACATCCATGCCCCCGTCAAGGACCAAAGGAAGAAGATGCTGGA
AGCCCTGGTGGTGCTGAAGCCAGTCAACGTGGTCCTGAAGGAGCTCCAGG
CCTCGGACTCGACCACGGGAGCGCGGGTGCCCTTTCTCATTAATACCCTC
CTCGCAACGAGCCTGGACACGAACCAGCCCCTGCGCGTGGAAGACCCAGA
GACGCCCCGTCTCGTGGACTTGGGGAAGCGGATCCTGAACTCGTCGACGT
CCGACAACTCGGACGTGGAGGAGAGCGACGATGGGATCAAGATCGCGCGG
GCCTACCGCATGCGGCAGCCGCAGGACATGACGAAGATTGGGCTGGCGAT
GCGGGAGGGCCTGCGGTTCGAGATAGAGGAGCGCTTCCTGGAGGGGCGGT
ACCGCAACCCCGTCCCCAGCTGCTCCTACCTCTATGGTGCAGCAGCCATG
GCGAACCCATACTACTTAGAGATGAAGTGGGTGGACCTGTGGTGCACCAG
CGCTGAGGCGGCGGTTATCAAGGCGAAGATCCGGGGGGTGATCGTCAAGC
AGCTGGAAGTGGTGTTGGCGGCCGGGGATGGGGAGGACATGTGCGGCAAT
GAGAAGGCTGGGGGCGGAGGGGGAGATGGACTCATGCAGCTAACGCTTGG
GCGGGCGGTTGCGAGACGCCCTGCGTCGGGAGGGGCGGCGTTGTTTGGAA
TGGAGAGTGGCTCCGACGATAGCGATGCAGAGGTGGATCCGGCAACCATC
AAGGAGTACGGGGAGCGGTGCAAGAATGAGGGGAAGGGGTGGAAGCACAG
GGGCTGGCAGCAAATGCTTCAGTTGTGGGCTTGTGATGCGGATGGGAAGG
CGGAGGGGAAGGGGGCACGCGAGCTCCCGGCATTGGCGCGGGTGTTTCGG
TGCCTCCTGGGGGTGCCGGGGTCGGCAGCCATCCTGGAGCGGGATTTCAG
CATGGCTGCGAACCTGCTCACCAACCGCCGGACAGTGCTATAG
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protein sequence of NO18G02490.1

>NO18G02490.1-protein ID=NO18G02490.1-protein|Name=NO18G02490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=456bp
MLNRAITKSLGHGIDEGAGVQGEEEKKDNEAPPGGGAFRSGRDLLHSIRK
IVVSISKSPLTKPAPHDGEAAGNQQMEVTQAQLEMYGKQLELKNTAPNRW
SSAVMVFERILESWTGVFRGLFLRSNAHIHAPVKDQRKKMLEALVVLKPV
NVVLKELQASDSTTGARVPFLINTLLATSLDTNQPLRVEDPETPRLVDLG
KRILNSSTSDNSDVEESDDGIKIARAYRMRQPQDMTKIGLAMREGLRFEI
EERFLEGRYRNPVPSCSYLYGAAAMANPYYLEMKWVDLWCTSAEAAVIKA
KIRGVIVKQLEVVLAAGDGEDMCGNEKAGGGGGDGLMQLTLGRAVARRPA
SGGAALFGMESGSDDSDAEVDPATIKEYGERCKNEGKGWKHRGWQQMLQL
WACDADGKAEGKGARELPALARVFRCLLGVPGSAAILERDFSMAANLLTN
RRTVL*
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Synonyms
Publications