NO18G02130.1, NO18G02130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G02130.1
Unique NameNO18G02130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length465
Alignment locationchr18:675456..676252 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:675456..676252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO18G02130.1 vs.
Match: EWM23409.1 (endoribonuclease l-psp [Nannochloropsis gaditana])

HSP 1 Score: 263.8 bits (673), Expect = 3.200e-67
Identity = 130/154 (84.42%), Postives = 147/154 (95.45%), Query Frame = 0 
Query:    1 MVRVEARLVELGIELPDVIAPKGNYALSVQTGNLLFLAGHIPLPKSGVLMTGKVGADVTLEQGQEAARIIAINILATLKGALGDLDKIKRIVKLVGFVNCVDGYSQQPTVVNGASDFFVQVLGEKGVHARSAVGTNALPLNIPVEIEAIVEVEE 155
            MV++EARL +LGI+LPDVIAPKGNYAL+V+TGNLLFLAGHIPL K+GVLMTGKVGAD +LE+GQEAA++IAIN+LATLK  LGDLDK+KRIVKLVGFVNCVDG+SQQP VVNGASDFFVQV G+KGVHARSAVGTNALPLNIPVEIEA+VEVE+
Sbjct:    1 MVQIEARLAQLGIDLPDVIAPKGNYALAVRTGNLLFLAGHIPLLKNGVLMTGKVGADKSLEEGQEAAQVIAINLLATLKSELGDLDKVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAVVEVED 154
The following BLAST results are available for this feature:
BLAST of NO18G02130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23409.13.200e-6784.42endoribonuclease l-psp [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G02130NO18G02130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G02130.1NO18G02130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G02130.1.cds1NO18G02130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02130.1.cds2NO18G02130.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02130.1.cds3NO18G02130.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02130.1.cds4NO18G02130.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G02130.1 ID=NO18G02130.1|Name=NO18G02130.1|organism=Nannochloropsis oceanica|type=mRNA|length=465bp
ATGGTCAGGGTCGAAGCACGACTGGTAGAGCTGGGCATTGAGCTGCCAGA
CGTAATTGCTCCCAAAGGCAACTACGCTCTTTCTGTCCAGACAGGCAATC
TTCTCTTTCTTGCTGGGCACATCCCCTTACCCAAAAGCGGCGTCCTCATG
ACGGGCAAAGTAGGCGCGGATGTAACACTGGAGCAAGGACAAGAAGCCGC
ACGCATCATTGCCATCAACATACTCGCGACATTGAAAGGAGCCTTGGGCG
ATTTGGACAAGATCAAACGCATTGTCAAGCTGGTGGGTTTTGTGAATTGC
GTGGACGGGTACAGCCAGCAGCCGACAGTTGTGAACGGGGCCAGTGATTT
CTTCGTGCAGGTGCTGGGGGAGAAGGGTGTGCATGCCAGGAGTGCGGTAG
GCACGAATGCCTTGCCTCTCAATATACCCGTGGAAATCGAGGCGATTGTG
GAGGTGGAGGAGTAG
back to top

protein sequence of NO18G02130.1

>NO18G02130.1-protein ID=NO18G02130.1-protein|Name=NO18G02130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=155bp
MVRVEARLVELGIELPDVIAPKGNYALSVQTGNLLFLAGHIPLPKSGVLM
TGKVGADVTLEQGQEAARIIAINILATLKGALGDLDKIKRIVKLVGFVNC
VDGYSQQPTVVNGASDFFVQVLGEKGVHARSAVGTNALPLNIPVEIEAIV
EVEE*
back to top

mRNA from alignment at chr18:675456..676252+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G02130.1 ID=NO18G02130.1|Name=NO18G02130.1|organism=Nannochloropsis oceanica|type=mRNA|length=797bp|location=Sequence derived from alignment at chr18:675456..676252+ (Nannochloropsis oceanica)
ATGGTCAGGGTCGAAGCACGACTGGTAGAGCTGGGCATTGAGCTGCCAGA
CGTAATTGCTCCCAAAGGTCGGTAGCACGTATTCCAGTGTCGTCGCCTCC
CCCGGTCGTAGCCTGACTCCCTTCAGACTGCATTTTCACAACCTTCTCAC
ACCGCACTCCTCACACCGCACTCCTCACACACCTACCTAGGCAACTACGC
TCTTTCTGTCCAGACAGGCAATCTTCTCTTTCTTGGTAAGAAATGGATGA
CAATGAGTAGTGGTAGGCAGTGCCTATCACCACTTTCACTTATCTTTCCT
CCCTTTCCAACCACACATGCAGCTGGGCACATCCCCTTACCCAAAAGCGG
CGTCCTCATGACGGGCAAAGTAGGCGCGGATGTAACACTGGAGCAAGGAC
AAGAAGCCGCACGCATCATTGCCATCAACATACTCGCGACATTGAAAGGA
GCCTTGGGCGATTTGGACAAGGTGGACACATCGTCCCTCCCCTCCTTCAC
TCCGTCCCTACGTCCCTCTGTCTCTTCTCCCCTATCCATTTCACTCAGAC
ACGCCTTCTTTCCTCCCCTCGCCCCCTCCTTTCTCCATCGCAGATCAAAC
GCATTGTCAAGCTGGTGGGTTTTGTGAATTGCGTGGACGGGTACAGCCAG
CAGCCGACAGTTGTGAACGGGGCCAGTGATTTCTTCGTGCAGGTGCTGGG
GGAGAAGGGTGTGCATGCCAGGAGTGCGGTAGGCACGAATGCCTTGCCTC
TCAATATACCCGTGGAAATCGAGGCGATTGTGGAGGTGGAGGAGTAG
back to top

Coding sequence (CDS) from alignment at chr18:675456..676252+

>NO18G02130.1 ID=NO18G02130.1|Name=NO18G02130.1|organism=Nannochloropsis oceanica|type=CDS|length=465bp|location=Sequence derived from alignment at chr18:675456..676252+ (Nannochloropsis oceanica)
ATGGTCAGGGTCGAAGCACGACTGGTAGAGCTGGGCATTGAGCTGCCAGA
CGTAATTGCTCCCAAAGGCAACTACGCTCTTTCTGTCCAGACAGGCAATC
TTCTCTTTCTTGCTGGGCACATCCCCTTACCCAAAAGCGGCGTCCTCATG
ACGGGCAAAGTAGGCGCGGATGTAACACTGGAGCAAGGACAAGAAGCCGC
ACGCATCATTGCCATCAACATACTCGCGACATTGAAAGGAGCCTTGGGCG
ATTTGGACAAGATCAAACGCATTGTCAAGCTGGTGGGTTTTGTGAATTGC
GTGGACGGGTACAGCCAGCAGCCGACAGTTGTGAACGGGGCCAGTGATTT
CTTCGTGCAGGTGCTGGGGGAGAAGGGTGTGCATGCCAGGAGTGCGGTAG
GCACGAATGCCTTGCCTCTCAATATACCCGTGGAAATCGAGGCGATTGTG
GAGGTGGAGGAGTAG
back to top
Synonyms
Publications