NO18G02130, NO18G02130 (gene) Nannochloropsis oceanica

Overview
NameNO18G02130
Unique NameNO18G02130
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length797
Alignment locationchr18:675456..676252 +

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Properties
Property NameValue
DescriptionEndoribonuclease l-psp
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:675456..676252 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR035959RutC-like_sf
IPR013813Endoribo_LPSP/chorism_mut-like
Homology
[Close]
BLAST of NO18G02130 vs. NCBI_GenBank
Match: EWM23409.1 (endoribonuclease l-psp [Nannochloropsis gaditana])

HSP 1 Score: 263.8 bits (673), Expect = 3.200e-67
Identity = 130/154 (84.42%), Postives = 147/154 (95.45%), Query Frame = 0 
Query:    1 MVRVEARLVELGIELPDVIAPKGNYALSVQTGNLLFLAGHIPLPKSGVLMTGKVGADVTLEQGQEAARIIAINILATLKGALGDLDKIKRIVKLVGFVNCVDGYSQQPTVVNGASDFFVQVLGEKGVHARSAVGTNALPLNIPVEIEAIVEVEE 155
            MV++EARL +LGI+LPDVIAPKGNYAL+V+TGNLLFLAGHIPL K+GVLMTGKVGAD +LE+GQEAA++IAIN+LATLK  LGDLDK+KRIVKLVGFVNCVDG+SQQP VVNGASDFFVQV G+KGVHARSAVGTNALPLNIPVEIEA+VEVE+
Sbjct:    1 MVQIEARLAQLGIDLPDVIAPKGNYALAVRTGNLLFLAGHIPLLKNGVLMTGKVGADKSLEEGQEAAQVIAINLLATLKSELGDLDKVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAVVEVED 154
[Close]
BLAST of NO18G02130 vs. NCBI_GenBank
Match: XP_005854737.1 (endoribonuclease l-psp [Nannochloropsis gaditana CCMP526] >EKU21626.1 endoribonuclease l-psp [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 218.0 bits (554), Expect = 2.000e-53
Identity = 102/153 (66.67%), Postives = 134/153 (87.58%), Query Frame = 0 
Query:    2 VRVEARLVELGIELPDVIAPKGNYALSVQTGNLLFLAGHIPLPKSGVLMTGKVGADVTLEQGQEAARIIAINILATLKGALGDLDKIKRIVKLVGFVNCVDGYSQQPTVVNGASDFFVQVLGEKGVHARSAVGTNALPLNIPVEIEAIVEVEE 155
            +  EA+L E+G++LP    PKGN+A++V++G +++L+GH+P   +G L+TGKVGA+V+ E+ Q AA++IA+N+L++LK  +GDLD++KRIVKLVGFVNCVDG+SQQP VVNGASDFFVQV G+KGVHARSAVGTNALPLNIPVEIEAIVEVE+
Sbjct:   32 IHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED 184
[Close]
BLAST of NO18G02130 vs. NCBI_GenBank
Match: EWM23442.1 (endoribonuclease l-psp [Nannochloropsis gaditana])

HSP 1 Score: 218.0 bits (554), Expect = 2.000e-53
Identity = 102/153 (66.67%), Postives = 134/153 (87.58%), Query Frame = 0 
Query:    2 VRVEARLVELGIELPDVIAPKGNYALSVQTGNLLFLAGHIPLPKSGVLMTGKVGADVTLEQGQEAARIIAINILATLKGALGDLDKIKRIVKLVGFVNCVDGYSQQPTVVNGASDFFVQVLGEKGVHARSAVGTNALPLNIPVEIEAIVEVEE 155
            +  EA+L E+G++LP    PKGN+A++V++G +++L+GH+P   +G L+TGKVGA+V+ E+ Q AA++IA+N+L++LK  +GDLD++KRIVKLVGFVNCVDG+SQQP VVNGASDFFVQV G+KGVHARSAVGTNALPLNIPVEIEAIVEVE+
Sbjct:   83 IHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED 235
[Close]
BLAST of NO18G02130 vs. NCBI_GenBank
Match: XP_002899620.1 (endoribonuclease L-PSP, putative [Phytophthora infestans T30-4] >EEY61980.1 endoribonuclease L-PSP, putative [Phytophthora infestans T30-4])

HSP 1 Score: 206.1 bits (523), Expect = 8.000e-50
Identity = 95/153 (62.09%), Postives = 125/153 (81.70%), Query Frame = 0 
Query:    2 VRVEARLVELGIELPDVIAPKGNYALSVQTGNLLFLAGHIPLPKSGVLMTGKVGADVTLEQGQEAARIIAINILATLKGALGDLDKIKRIVKLVGFVNCVDGYSQQPTVVNGASDFFVQVLGEKGVHARSAVGTNALPLNIPVEIEAIVEVEE 155
            V +E ++ ELG  LP+V  PKGNY  SV++GN +++AGH+P P  G L+ GKVG D+T EQG EAA  +A++++ATLK  +GDLDKIKR+VKLVGFVNCVDG++QQP V+NGASD   +V G+KG+HARSAVGTNALPLN+ VE+EA+VE+E+
Sbjct:   20 VHIERKIEELGYTLPNVAEPKGNYRTSVRSGNTIYMAGHLPQPAGGDLILGKVGKDLTPEQGYEAAHYVALSLMATLKQEVGDLDKIKRVVKLVGFVNCVDGFTQQPAVINGASDTIGKVFGDKGIHARSAVGTNALPLNVAVEVEAVVEIED 172
[Close]
BLAST of NO18G02130 vs. NCBI_GenBank
Match: ETL98094.1 (hypothetical protein L917_04769 [Phytophthora parasitica])

HSP 1 Score: 205.7 bits (522), Expect = 1.000e-49
Identity = 96/153 (62.75%), Postives = 124/153 (81.05%), Query Frame = 0 
Query:    2 VRVEARLVELGIELPDVIAPKGNYALSVQTGNLLFLAGHIPLPKSGVLMTGKVGADVTLEQGQEAARIIAINILATLKGALGDLDKIKRIVKLVGFVNCVDGYSQQPTVVNGASDFFVQVLGEKGVHARSAVGTNALPLNIPVEIEAIVEVEE 155
            V +E ++ ELG  LP V  PKGNY  SV++GN +++AGH+P P  G L+ GKVG D+T EQG EAA  +A++++ATLK  +GDLDKIKR+VKLVGFVNCVDG++QQP V+NGASD   +V G+KG+HARSAVGTNALPLN+ VE+EAIVE+E+
Sbjct:   20 VHIERKIEELGYSLPAVAEPKGNYRTSVRSGNTIYMAGHLPQPAGGDLILGKVGKDLTPEQGYEAAHYVALSLMATLKQEVGDLDKIKRVVKLVGFVNCVDGFTQQPAVINGASDTIGKVFGDKGIHARSAVGTNALPLNVAVEVEAIVEIED 172
[Close]
BLAST of NO18G02130 vs. NCBI_GenBank
Match: ETO80456.1 (hypothetical protein F444_05101 [Phytophthora parasitica P1976])

HSP 1 Score: 205.7 bits (522), Expect = 1.000e-49
Identity = 96/153 (62.75%), Postives = 124/153 (81.05%), Query Frame = 0 
Query:    2 VRVEARLVELGIELPDVIAPKGNYALSVQTGNLLFLAGHIPLPKSGVLMTGKVGADVTLEQGQEAARIIAINILATLKGALGDLDKIKRIVKLVGFVNCVDGYSQQPTVVNGASDFFVQVLGEKGVHARSAVGTNALPLNIPVEIEAIVEVEE 155
            V +E ++ ELG  LP V  PKGNY  SV++GN +++AGH+P P  G L+ GKVG D+T EQG EAA  +A++++ATLK  +GDLDKIKR+VKLVGFVNCVDG++QQP V+NGASD   +V G+KG+HARSAVGTNALPLN+ VE+EAIVE+E+
Sbjct:   20 VHIERKIEELGYTLPAVAEPKGNYRTSVRSGNTIYMAGHLPQPAGGDLILGKVGKDLTPEQGYEAAHFVALSLMATLKQEVGDLDKIKRVVKLVGFVNCVDGFTQQPAVINGASDTIGKVFGDKGIHARSAVGTNALPLNVAVEVEAIVEIED 172
[Close]
BLAST of NO18G02130 vs. NCBI_GenBank
Match: XP_008902408.1 (hypothetical protein PPTG_09268 [Phytophthora parasitica INRA-310] >ETI51704.1 hypothetical protein F443_05052 [Phytophthora parasitica P1569] >ETK91529.1 hypothetical protein L915_04923 [Phytophthora parasitica] >ETL44940.1 hypothetical protein L916_04870 [Phytophthora parasitica] >ETM51260.1 hypothetical protein L914_04873 [Phytophthora parasitica] >ETN12438.1 hypothetical protein PPTG_09268 [Phytophthora parasitica INRA-310] >ETP21488.1 hypothetical protein F441_05058 [Phytophthora parasitica CJ01A1] >KUG00690.1 hypothetical protein AM587_10006148 [Phytophthora nicotianae])

HSP 1 Score: 205.3 bits (521), Expect = 1.400e-49
Identity = 96/153 (62.75%), Postives = 124/153 (81.05%), Query Frame = 0 
Query:    2 VRVEARLVELGIELPDVIAPKGNYALSVQTGNLLFLAGHIPLPKSGVLMTGKVGADVTLEQGQEAARIIAINILATLKGALGDLDKIKRIVKLVGFVNCVDGYSQQPTVVNGASDFFVQVLGEKGVHARSAVGTNALPLNIPVEIEAIVEVEE 155
            V +E ++ ELG  LP V  PKGNY  SV++GN +++AGH+P P  G L+ GKVG D+T EQG EAA  +A++++ATLK  +GDLDKIKR+VKLVGFVNCVDG++QQP V+NGASD   +V G+KG+HARSAVGTNALPLN+ VE+EAIVE+E+
Sbjct:   20 VHIERKIEELGYTLPAVAEPKGNYRTSVRSGNTIYMAGHLPQPAGGDLILGKVGKDLTPEQGYEAAHYVALSLMATLKQEVGDLDKIKRVVKLVGFVNCVDGFTQQPAVINGASDTIGKVFGDKGIHARSAVGTNALPLNVAVEVEAIVEIED 172
[Close]
BLAST of NO18G02130 vs. NCBI_GenBank
Match: GBG28363.1 (Protein TCP17 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 203.8 bits (517), Expect = 4.000e-49
Identity = 94/153 (61.44%), Postives = 125/153 (81.70%), Query Frame = 0 
Query:    2 VRVEARLVELGIELPDVIAPKGNYALSVQTGNLLFLAGHIPLPKSGVLMTGKVGADVTLEQGQEAARIIAINILATLKGALGDLDKIKRIVKLVGFVNCVDGYSQQPTVVNGASDFFVQVLGEKGVHARSAVGTNALPLNIPVEIEAIVEVEE 155
            V  EA+L +LG  LP V +PKG+Y L V++GN +F AGH+P P +G L+ GKVG D+++E+  +AA+  A++ILATLK  LGDLD++ R+VK+VGFVNC DG++QQP V+NGASD F +VLGE+G+HARSAVGTN+LPLNIPVE+EAIVE+ E
Sbjct:   31 VHTEAKLEKLGYTLPQVASPKGSYQLCVRSGNQMFTAGHLPQPANGDLLVGKVGVDLSVEEANKAAQYCALSILATLKAELGDLDRVARVVKVVGFVNCADGFAQQPQVINGASDLFAEVLGERGLHARSAVGTNSLPLNIPVEVEAIVEISE 183
[Close]
BLAST of NO18G02130 vs. NCBI_GenBank
Match: POM62375.1 (Endoribonuclease L-PSP [Phytophthora palmivora var. palmivora])

HSP 1 Score: 203.4 bits (516), Expect = 5.200e-49
Identity = 96/153 (62.75%), Postives = 123/153 (80.39%), Query Frame = 0 
Query:    2 VRVEARLVELGIELPDVIAPKGNYALSVQTGNLLFLAGHIPLPKSGVLMTGKVGADVTLEQGQEAARIIAINILATLKGALGDLDKIKRIVKLVGFVNCVDGYSQQPTVVNGASDFFVQVLGEKGVHARSAVGTNALPLNIPVEIEAIVEVEE 155
            V +E ++ E+G  LP V  PKGNY  SV++GN ++LAGH+P P  G L+ GKVG D+T EQ  EAA+  A++I+ATLK  +GDLDKIKR+VKLVGFVNCVDG++QQP V+NGASD   +V G+KG+HARSAVGTNALPLN+ VE+EA+VE+EE
Sbjct:   14 VHIERKIEEIGYTLPAVAEPKGNYRTSVRSGNTIYLAGHLPQPAGGDLVLGKVGKDLTPEQAYEAAQYCALSIMATLKQEVGDLDKIKRVVKLVGFVNCVDGFTQQPAVINGASDTIGKVFGDKGIHARSAVGTNALPLNVAVEVEAVVEIEE 166
[Close]
BLAST of NO18G02130 vs. NCBI_GenBank
Match: ETP49338.1 (hypothetical protein F442_05119 [Phytophthora parasitica P10297])

HSP 1 Score: 201.8 bits (512), Expect = 1.500e-48
Identity = 95/153 (62.09%), Postives = 123/153 (80.39%), Query Frame = 0 
Query:    2 VRVEARLVELGIELPDVIAPKGNYALSVQTGNLLFLAGHIPLPKSGVLMTGKVGADVTLEQGQEAARIIAINILATLKGALGDLDKIKRIVKLVGFVNCVDGYSQQPTVVNGASDFFVQVLGEKGVHARSAVGTNALPLNIPVEIEAIVEVEE 155
            V +E ++ ELG  LP V   KGNY  SV++GN +++AGH+P P  G L+ GKVG D+T EQG EAA  +A++++ATLK  +GDLDKIKR+VKLVGFVNCVDG++QQP V+NGASD   +V G+KG+HARSAVGTNALPLN+ VE+EAIVE+E+
Sbjct:   20 VHIERKIEELGYTLPAVAEHKGNYRTSVRSGNTIYMAGHLPQPAGGDLILGKVGKDLTPEQGYEAAHYVALSLMATLKQEVGDLDKIKRVVKLVGFVNCVDGFTQQPAVINGASDTIGKVFGDKGIHARSAVGTNALPLNVAVEVEAIVEIED 172
The following BLAST results are available for this feature:
BLAST of NO18G02130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Position :
0
Zoom :
x 1
100200300400500600700Expect = 3.20e-67 / Id = 84.42Expect = 2.00e-53 / Id = 66.67Expect = 2.00e-53 / Id = 66.67Expect = 8.00e-50 / Id = 62.09Expect = 1.00e-49 / Id = 62.75Expect = 1.00e-49 / Id = 62.75Expect = 1.40e-49 / Id = 62.75Expect = 4.00e-49 / Id = 61.44Expect = 5.20e-49 / Id = 62.75Expect = 1.50e-48 / Id = 62.09SequenceEWM23409.1XP_005854737.1EWM23442.1XP_002899620.1ETL98094.1ETO80456.1XP_008902408.1GBG28363.1POM62375.1ETP49338.1
Match NameE-valueIdentityDescription
EWM23409.13.200e-6784.42endoribonuclease l-psp [Nannochloropsis gaditana][more]
XP_005854737.12.000e-5366.67endoribonuclease l-psp [Nannochloropsis gaditana C... [more]
EWM23442.12.000e-5366.67endoribonuclease l-psp [Nannochloropsis gaditana][more]
XP_002899620.18.000e-5062.09endoribonuclease L-PSP, putative [Phytophthora inf... [more]
ETL98094.11.000e-4962.75hypothetical protein L917_04769 [Phytophthora para... [more]
ETO80456.11.000e-4962.75hypothetical protein F444_05101 [Phytophthora para... [more]
XP_008902408.11.400e-4962.75hypothetical protein PPTG_09268 [Phytophthora para... [more]
GBG28363.14.000e-4961.44Protein TCP17 [Aurantiochytrium sp. FCC1311][more]
POM62375.15.200e-4962.75Endoribonuclease L-PSP [Phytophthora palmivora var... [more]
ETP49338.11.500e-4862.09hypothetical protein F442_05119 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR046ncniR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G02130.1NO18G02130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604456gene_8910Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G02130.1NO18G02130.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G02130 ID=NO18G02130|Name=NO18G02130|organism=Nannochloropsis oceanica|type=gene|length=797bp
ATGGTCAGGGTCGAAGCACGACTGGTAGAGCTGGGCATTGAGCTGCCAGA
CGTAATTGCTCCCAAAGgtcggtagcacgtattccagtgtcgtcgcctcc
cccggtcgtagcctgactcccttcagactgcattttcacaaccttctcac
accgcactcctcacaccgcactcctcacacacctacctagGCAACTACGC
TCTTTCTGTCCAGACAGGCAATCTTCTCTTTCTTGgtaagaaatggatga
caatgagtagtggtaggcagtgcctatcaccactttcacttatctttcct
ccctttccaaccacacatgcagCTGGGCACATCCCCTTACCCAAAAGCGG
CGTCCTCATGACGGGCAAAGTAGGCGCGGATGTAACACTGGAGCAAGGAC
AAGAAGCCGCACGCATCATTGCCATCAACATACTCGCGACATTGAAAGGA
GCCTTGGGCGATTTGGACAAGgtggacacatcgtccctcccctccttcac
tccgtccctacgtccctctgtctcttctcccctatccatttcactcagac
acgccttctttcctcccctcgccccctcctttctccatcgcagATCAAAC
GCATTGTCAAGCTGGTGGGTTTTGTGAATTGCGTGGACGGGTACAGCCAG
CAGCCGACAGTTGTGAACGGGGCCAGTGATTTCTTCGTGCAGGTGCTGGG
GGAGAAGGGTGTGCATGCCAGGAGTGCGGTAGGCACGAATGCCTTGCCTC
TCAATATACCCGTGGAAATCGAGGCGATTGTGGAGGTGGAGGAGTAG
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protein sequence of NO18G02130.1

>NO18G02130.1-protein ID=NO18G02130.1-protein|Name=NO18G02130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=155bp
MVRVEARLVELGIELPDVIAPKGNYALSVQTGNLLFLAGHIPLPKSGVLM
TGKVGADVTLEQGQEAARIIAINILATLKGALGDLDKIKRIVKLVGFVNC
VDGYSQQPTVVNGASDFFVQVLGEKGVHARSAVGTNALPLNIPVEIEAIV
EVEE*
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Synonyms
Publications