NO18G02010.1, NO18G02010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G02010.1
Unique NameNO18G02010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1847
Alignment locationchr18:621902..624535 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:621902..624535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G02010.1 vs.
Match: EWM23417.1 (peroxisomal acyl-coenzyme a oxidase 1 [Nannochloropsis gaditana])

HSP 1 Score: 740.3 bits (1910), Expect = 4.300e-210
Identity = 365/433 (84.30%), Postives = 393/433 (90.76%), Query Frame = 0 
Query:   35 MDVAPELVQERRNASFSPASLTQLVDGGAAKVERRRWLRSLILADPIFSNEDAIYLNHTERYKRALAKCGRLDQLINTHGLSEEDGAVLRSLASEDLPTLLHDLMFLPCLLSLCSEEQQAYWVPLARSKKVLGCYAQTEMGHGSNIQALQTTATFDPATDEFVLDTPTIQSFKWWPGTLGRTANTAMVIARLLLPSSPPLSPSSSYQDLGIHNFIVPLRDLHTHALLPGVVARDIGPKVAFAGMDNGCLELHSVRIPRANLAQRFVRVSRDGVWSRVEGTHPKAAYVTMMQVRAIIVVHSARELSKAATIAIRYSAVRHQGYDADDSGPVKREHQILDYPSQQYRLLPLLAASIGFFFCGRAVQALLAETEQALLLGKKGQAEVGQQMGKAHASLAGLKSLCTTIAAEGIEDCRKCCGGHGYLACSGLPELSG 468
            M+VAPELVQER  ASF P++LTQLVDGG AK+ RRRWLRSLIL+DPIF+NED+IYLNHTERYKRALAKCGRLDQLIN + L+EED  VLRS  SEDLPTLLHDLMFLPCLLSLCSEEQQAYWVP ARSKKVLGCYAQTE+GHGSNIQALQTTATFDPATDEF++DTPT Q++KWWPGTLGRTANTAMVIARLLLP     S  +SY+D+GIHNFIVPLRDLHTHALLPGVV RDIGPK+AFAGMDNGCLELH+VRIPRANLAQRFVRV+R GVWSRVEGTH KAAYVTMMQVRAIIVVHSARELSKA TIAIRYSAVR QG+D   +G    E QILDY SQQYRLLPLLAAS+GFFFCGRAV  LLAETE ALL G+KGQAEVG  MG+AHA+LAGLKSLCTTIAA+GIE+CRKCCGGHGYLACSGLPELSG
Sbjct:    1 MEVAPELVQERGKASFPPSTLTQLVDGGVAKMARRRWLRSLILSDPIFNNEDSIYLNHTERYKRALAKCGRLDQLINKYRLNEEDSIVLRSCTSEDLPTLLHDLMFLPCLLSLCSEEQQAYWVPAARSKKVLGCYAQTELGHGSNIQALQTTATFDPATDEFIMDTPTAQAYKWWPGTLGRTANTAMVIARLLLPQESSSSSPASYKDMGIHNFIVPLRDLHTHALLPGVVTRDIGPKIAFAGMDNGCLELHAVRIPRANLAQRFVRVTRQGVWSRVEGTHSKAAYVTMMQVRAIIVVHSARELSKACTIAIRYSAVRRQGFDDSKTG---SELQILDYASQQYRLLPLLAASVGFFFCGRAVLTLLAETEDALLKGRKGQAEVGALMGRAHAALAGLKSLCTTIAADGIEECRKCCGGHGYLACSGLPELSG 430
The following BLAST results are available for this feature:
BLAST of NO18G02010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23417.14.300e-21084.30peroxisomal acyl-coenzyme a oxidase 1 [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G02010NO18G02010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G02010.1NO18G02010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G02010.1.cds1NO18G02010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02010.1.cds2NO18G02010.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02010.1.cds3NO18G02010.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02010.1.cds4NO18G02010.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G02010.1 ID=NO18G02010.1|Name=NO18G02010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1847bp
ATGTTTTCCCTGCGGGTTGGATGTCAGGGCTCACCCGAGCACAGTACATC
AGGAGCGGCGTCAAGCAGCAGCGGTAGCAACACATCCATCATCACCACCT
TCATGGACGTCGCCCCAGAACTCGTTCAAGAACGACGCAATGCCTCCTTC
TCGCCCGCCTCCCTGACCCAGCTCGTTGACGGTGGCGCTGCCAAGGTCGA
GCGTCGACGCTGGCTGCGAAGCCTCATTCTAGCAGACCCCATTTTTAGCA
ATGAAGATGCCATCTACCTCAATCACACCGAGCGCTACAAACGTGCTCTG
GCGAAATGTGGTCGCTTGGACCAGTTGATCAATACTCACGGGCTGAGCGA
GGAGGATGGCGCTGTCCTTCGTTCTCTCGCCTCGGAGGATCTTCCCACCC
TCTTGCACGACCTCATGTTCCTCCCCTGCCTCCTGAGTCTTTGCAGCGAA
GAGCAACAAGCTTACTGGGTTCCCTTAGCGCGAAGCAAGAAAGTGTTAGG
ATGCTATGCGCAGACGGAGATGGGGCATGGCAGTAACATTCAAGCCTTGC
AAACGACAGCGACCTTTGATCCCGCAACCGATGAATTCGTCCTCGACACG
CCCACCATTCAGTCCTTCAAGTGGTGGCCTGGGACACTGGGCCGCACCGC
CAACACCGCAATGGTCATCGCCCGTCTCCTGCTTCCTTCCTCCCCTCCTT
TGTCTCCTTCCTCCTCCTACCAAGACCTGGGCATCCACAACTTTATCGTC
CCTCTACGTGACCTTCACACGCATGCGCTGCTCCCTGGCGTGGTGGCGCG
GGACATAGGACCCAAGGTAGCCTTTGCGGGCATGGACAATGGCTGTCTAG
AACTGCATTCTGTCAGAATTCCACGCGCAAATCTCGCGCAGCGGTTTGTG
CGTGTCTCAAGAGACGGGGTGTGGAGCCGGGTGGAAGGGACGCACCCCAA
GGCGGCTTACGTTACCATGATGCAGGTCCGTGCTATCATTGTCGTCCACT
CTGCCCGGGAGCTGAGCAAAGCTGCCACCATCGCCATTCGATATTCTGCC
GTGCGCCACCAAGGGTATGATGCCGACGATTCCGGCCCTGTGAAACGCGA
GCATCAAATCCTTGACTACCCTTCACAGCAATACCGCCTCCTTCCCCTCC
TTGCCGCTTCAATTGGCTTCTTTTTCTGTGGACGTGCCGTGCAAGCCTTG
CTGGCGGAAACTGAACAAGCACTCTTGTTGGGGAAAAAAGGCCAAGCGGA
AGTAGGGCAGCAGATGGGGAAGGCCCATGCGTCGCTGGCAGGGTTGAAAA
GTCTATGTACGACGATCGCTGCCGAGGGGATTGAAGATTGTAGGAAATGT
TGCGGAGGACATGGTTATCTGGCTTGCTCGGGCCTGCCGGAGTTGTCAGG
TATATCTTCTTTTCTCTCTTTGTCTCCCTCTCTTCCTCCCTTCCTCCCTT
TTTTCGTTGTCTTCATTCGTTCCTTTACTCTCGTCTTTTCCTCCTTATCC
TCCTTGTGTCGCGCCCTTTATTGGCTCCCCCATCCCATCCTCTATATTTC
ATGTGCCCACTGCCGTCTAGCCCGACGCCCGTTTCTTTCATGCTCCCAAA
TCCAGTGCCTCATCATTCCACTCTTTCTCTCCTTCTTTCCCTCCCTCTTT
CCCTCTCTTTCCCGCAGGCAATTTCCTCCAGCAATGCACGGTGGAGGGAG
ATAATGTCTTGCTGACCCAACAAACCACGGGCTATTTATTAAAGAGCTAC
ATCAAGTGGAGGATGGGGGATGGGAGTGAGGGAGAGAGGGGGGTCTGGAT
GAGGATTTGTGGTACTTTGCAAGTGCCTCGCAGGGGGAGGGCGGGGG
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protein sequence of NO18G02010.1

>NO18G02010.1-protein ID=NO18G02010.1-protein|Name=NO18G02010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=568bp
MFSLRVGCQGSPEHSTSGAASSSSGSNTSIITTFMDVAPELVQERRNASF
SPASLTQLVDGGAAKVERRRWLRSLILADPIFSNEDAIYLNHTERYKRAL
AKCGRLDQLINTHGLSEEDGAVLRSLASEDLPTLLHDLMFLPCLLSLCSE
EQQAYWVPLARSKKVLGCYAQTEMGHGSNIQALQTTATFDPATDEFVLDT
PTIQSFKWWPGTLGRTANTAMVIARLLLPSSPPLSPSSSYQDLGIHNFIV
PLRDLHTHALLPGVVARDIGPKVAFAGMDNGCLELHSVRIPRANLAQRFV
RVSRDGVWSRVEGTHPKAAYVTMMQVRAIIVVHSARELSKAATIAIRYSA
VRHQGYDADDSGPVKREHQILDYPSQQYRLLPLLAASIGFFFCGRAVQAL
LAETEQALLLGKKGQAEVGQQMGKAHASLAGLKSLCTTIAAEGIEDCRKC
CGGHGYLACSGLPELSGISSFLSLSPSLPPFLPFFVVFIRSFTLVFSSLS
SLCRALYWLPHPILYISCAHCRLARRPFLSCSQIQCLIIPLFLSFFPSLF
PSLSRRQFPPAMHGGGR*
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mRNA from alignment at chr18:621902..624535+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G02010.1 ID=NO18G02010.1|Name=NO18G02010.1|organism=Nannochloropsis oceanica|type=mRNA|length=2634bp|location=Sequence derived from alignment at chr18:621902..624535+ (Nannochloropsis oceanica)
ATGTTTTCCCTGCGGGTTGGATGTCAGGGGTGGGTGGTGAGGAGTGCTGA
GATGCAGCGAAGAAAGCAAAGTGCAACTTGCCTTGGCAAACGCTGCAACA
GCCTATTTCATATTCACTTGAATGCCAACACGCTGGACGGGGAGCATTCG
AGGACGTAATAACAGCGAGCACTGTCATCATAGCCATTATCCTGTATCAC
GTGCCCCGGCCTGCAAATTCCTGCCTCCTCAATTTCATATTTTTTCCCTT
CCCAGCTCACCCGAGCACAGTACATCAGGAGCGGCGTCAAGCAGCAGCGG
TAGCAACACATCCATCATCACCACCTTCATGGACGTCGCCCCAGAACTCG
TTCAAGAACGACGCAATGCCTCCTTCTCGCCCGCCTCCCTGACCCAGCTC
GTTGACGGTGGCGCTGCCAAGGTCGAGCGTCGACGCTGGCTGCGAAGCCT
CATTCTAGCAGACCCCATTTTTAGCAATGAAGATGCCATCTACCTCAATC
ACACCGAGCGCTACAAACGTGCTCTGGCGAAATGTGGTCGCTTGGACCAG
TTGATCAATACTCACGGGCTGAGCGAGGAGGATGGCGCTGTCCTTCGTTC
TCTCGCCTCGGAGGATCTTCCCACCCTCTTGCACGACCTCATGTTCCTCC
CCTGCCTCCTGAGTCTTTGCAGCGAAGAGCAACAAGCTTACTGGGTTCCC
TTAGCGCGAAGCAAGAAAGTGTTAGGATGCTATGCGCAGACGGAGATGGG
GCATGGCAGTAACATTCAAGCCTTGCAAACGACAGCGACCTTTGATCCCG
CAACCGATGAATTCGTCCTCGACACGCCCACCATTCAGTCCTTCAAGTGG
TGGCCTGGGACACTGGGCCGGTACGTCCCGTTTTCCTTTCTTGCTTTGTT
TATACCCTCTGTAGAAGTTGCAGCTTGTCGTTTCTTTGTATGTATCAACG
TCCCCTGCTCCCTCCCTTCCTCCCTTTTTTCCTTCCTCCTTTCCCTCCTC
CACACCCGCAGCACCGCCAACACCGCAATGGTCATCGCCCGTCTCCTGCT
TCCTTCCTCCCCTCCTTTGTCTCCTTCCTCCTCCTACCAAGACCTGGGCA
TCCACAACTTTATCGTCCCTCTACGTGACCTTCACACGCATGCGCTGCTC
CCTGGCGTGGTGGCGCGGGACATAGGACCCAAGGTAGCCTTTGCGGGCAT
GGACAATGGCTGTCTAGAACTGCATTCTGTCAGAATTCCACGCGCAAATC
TCGCGCAGCGGTTTGTGCGTGTCTCAAGAGACGGGGTGTGGAGCCGGGTG
GAAGGGACGCACCCCAAGGCGGCTTACGTTACCATGATGCAGGTAGGTGG
GGAGGTACATCGTGTGGGGGTTTTGGAAGATCCCTCACTTCCTCCAGCCT
TTCCCATGGAAGATTTTCTGGAATTTATTAAGGACTGTCCCTCGCGTCAT
TCTGGATCAGTGTCAGTGTATTTTGCATCGCTCTTGACTCCGAAATGTGT
TCACGTAGTTACAAATGTGTCTACGTAGTTACCCCCTTTATTTGAAGCAC
TCGGGGTCGTGCTAGCATCACCACCCACTCTGCCCGGAACTTGGACGAAG
CCGCCACCATGGCCGTCTAATATTCGGAGACCCCAACAACCGTGGCTCCG
GGGCTCTTCCTTCGGGGGAAAAAAAACACTACTTTATAACATGTAATCAT
CTGGTATGTGACTCATTTCGTCCACCTTATTCTGGGAAATCCAAATGTAC
ATATGTACACAGGTCCGTGCTATCATTGTCGTCCACTCTGCCCGGGAGCT
GAGCAAAGCTGCCACCATCGCCATTCGATATTCTGCCGTGCGCCACCAAG
GGTATGATGCCGACGATTCCGGCCCTGTGAAACGCGAGCATCAAATCCTT
GACTACCCTTCACAGCAATACCGCCTCCTTCCCCTCCTTGCCGCTTCAAT
TGGCTTCTTTTTCTGTGGACGTGCCGTGCAAGCCTTGCTGGCGGAAACTG
AACAAGCACTCTTGTTGGGGAAAAAAGGCCAAGCGGAAGTAGGGCAGCAG
ATGGGGAAGGCCCATGCGTCGCTGGCAGGGTTGAAAAGTCTATGTACGAC
GATCGCTGCCGAGGGGATTGAAGATTGTAGGAAATGTTGCGGAGGACATG
GTTATCTGGCTTGCTCGGGCCTGCCGGAGTTGTCAGGTATATCTTCTTTT
CTCTCTTTGTCTCCCTCTCTTCCTCCCTTCCTCCCTTTTTTCGTTGTCTT
CATTCGTTCCTTTACTCTCGTCTTTTCCTCCTTATCCTCCTTGTGTCGCG
CCCTTTATTGGCTCCCCCATCCCATCCTCTATATTTCATGTGCCCACTGC
CGTCTAGCCCGACGCCCGTTTCTTTCATGCTCCCAAATCCAGTGCCTCAT
CATTCCACTCTTTCTCTCCTTCTTTCCCTCCCTCTTTCCCTCTCTTTCCC
GCAGGCAATTTCCTCCAGCAATGCACGGTGGAGGGAGATAATGTCTTGCT
GACCCAACAAACCACGGGCTATTTATTAAAGAGCTACATCAAGTGGAGGA
TGGGGGATGGGAGTGAGGGAGAGAGGGGGGTCTGGATGAGGATTTGTGGT
ACTTTGCAAGTGCCTCGCAGGGGGAGGGCGGGGG
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Coding sequence (CDS) from alignment at chr18:621902..624535+

>NO18G02010.1 ID=NO18G02010.1|Name=NO18G02010.1|organism=Nannochloropsis oceanica|type=CDS|length=1704bp|location=Sequence derived from alignment at chr18:621902..624535+ (Nannochloropsis oceanica)
ATGTTTTCCCTGCGGGTTGGATGTCAGGGCTCACCCGAGCACAGTACATC
AGGAGCGGCGTCAAGCAGCAGCGGTAGCAACACATCCATCATCACCACCT
TCATGGACGTCGCCCCAGAACTCGTTCAAGAACGACGCAATGCCTCCTTC
TCGCCCGCCTCCCTGACCCAGCTCGTTGACGGTGGCGCTGCCAAGGTCGA
GCGTCGACGCTGGCTGCGAAGCCTCATTCTAGCAGACCCCATTTTTAGCA
ATGAAGATGCCATCTACCTCAATCACACCGAGCGCTACAAACGTGCTCTG
GCGAAATGTGGTCGCTTGGACCAGTTGATCAATACTCACGGGCTGAGCGA
GGAGGATGGCGCTGTCCTTCGTTCTCTCGCCTCGGAGGATCTTCCCACCC
TCTTGCACGACCTCATGTTCCTCCCCTGCCTCCTGAGTCTTTGCAGCGAA
GAGCAACAAGCTTACTGGGTTCCCTTAGCGCGAAGCAAGAAAGTGTTAGG
ATGCTATGCGCAGACGGAGATGGGGCATGGCAGTAACATTCAAGCCTTGC
AAACGACAGCGACCTTTGATCCCGCAACCGATGAATTCGTCCTCGACACG
CCCACCATTCAGTCCTTCAAGTGGTGGCCTGGGACACTGGGCCGCACCGC
CAACACCGCAATGGTCATCGCCCGTCTCCTGCTTCCTTCCTCCCCTCCTT
TGTCTCCTTCCTCCTCCTACCAAGACCTGGGCATCCACAACTTTATCGTC
CCTCTACGTGACCTTCACACGCATGCGCTGCTCCCTGGCGTGGTGGCGCG
GGACATAGGACCCAAGGTAGCCTTTGCGGGCATGGACAATGGCTGTCTAG
AACTGCATTCTGTCAGAATTCCACGCGCAAATCTCGCGCAGCGGTTTGTG
CGTGTCTCAAGAGACGGGGTGTGGAGCCGGGTGGAAGGGACGCACCCCAA
GGCGGCTTACGTTACCATGATGCAGGTCCGTGCTATCATTGTCGTCCACT
CTGCCCGGGAGCTGAGCAAAGCTGCCACCATCGCCATTCGATATTCTGCC
GTGCGCCACCAAGGGTATGATGCCGACGATTCCGGCCCTGTGAAACGCGA
GCATCAAATCCTTGACTACCCTTCACAGCAATACCGCCTCCTTCCCCTCC
TTGCCGCTTCAATTGGCTTCTTTTTCTGTGGACGTGCCGTGCAAGCCTTG
CTGGCGGAAACTGAACAAGCACTCTTGTTGGGGAAAAAAGGCCAAGCGGA
AGTAGGGCAGCAGATGGGGAAGGCCCATGCGTCGCTGGCAGGGTTGAAAA
GTCTATGTACGACGATCGCTGCCGAGGGGATTGAAGATTGTAGGAAATGT
TGCGGAGGACATGGTTATCTGGCTTGCTCGGGCCTGCCGGAGTTGTCAGG
TATATCTTCTTTTCTCTCTTTGTCTCCCTCTCTTCCTCCCTTCCTCCCTT
TTTTCGTTGTCTTCATTCGTTCCTTTACTCTCGTCTTTTCCTCCTTATCC
TCCTTGTGTCGCGCCCTTTATTGGCTCCCCCATCCCATCCTCTATATTTC
ATGTGCCCACTGCCGTCTAGCCCGACGCCCGTTTCTTTCATGCTCCCAAA
TCCAGTGCCTCATCATTCCACTCTTTCTCTCCTTCTTTCCCTCCCTCTTT
CCCTCTCTTTCCCGCAGGCAATTTCCTCCAGCAATGCACGGTGGAGGGAG
ATAA
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Synonyms
Publications