NO18G01820, NO18G01820 (gene) Nannochloropsis oceanica

Overview
NameNO18G01820
Unique NameNO18G01820
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1703
Alignment locationchr18:564430..566132 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:564430..566132 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036361SAP_dom_sf
IPR003034SAP_dom
Homology
The following BLAST results are available for this feature:
BLAST of NO18G01820 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR046ncniR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004034NSK004034Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01820.1NO18G01820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|223522gene_8869Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01820.1NO18G01820.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01820 ID=NO18G01820|Name=NO18G01820|organism=Nannochloropsis oceanica|type=gene|length=1703bp
ATGGACTCCAGCTGCGGCAGCCTCACGATGAGGAGAAGAAGACGCCTGAC
CACCCCCTCTTCCGCCTCCGCCTCCTCCCTCGTCCTCCTCCTTGTCCTGC
TCTCGTCCTCCTTCTTTCCTGCACCTACCACCCACGCGTTTTTGCTTCAC
TCCTTCACGCCTTCCGTGCATTTGTACGGTGGCAGCAGTAGTAGTAGTAC
CATCAGCAGTAGTAGTAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCC
GAAGCCTACACAGGGCCTTGCGGATGAGTGATGAAGCATACTATGGCGAG
GGAGGAGACACAAAGGGAGGGGCCAATGCACGGgtacgagttttgtatgg
gtaccgtgagatgtccattccccctttctgtctgtgaagtcagtggcgac
agcagtacgaaaatgagaaggataagattcgcatgccatttctcttacta
ccgcttctgtgggaggcagcaggcagccttttatcccattcccctttcaa
tctccttctttaaattatttatttaacaacagCAACAGAAAAGAAACCGC
CGCCCTACCCGCCCCCCACCCCCGCCTGTTCGCCGCACCGACGGGGAGGG
AGGTAAAGGAGGAGGAGGACCTCCAAGGCGAGGTAGCGGCCAGGGTGTAC
CGCAGAGGGATATTGCACAGTTGATTGAACGgtacgtgtgacggaaggga
gggagagagggagggagggccggagggagagagagagagagaggaaggtg
aaggtggctgctcttggaggaatgacaagcccatctccacacctcacacg
ccctctttccctccctccctcccttcctccttcatgtagGACGGGGCAGA
ACGAGCCAGCCTGGAAACGAGCTGTGAATTTGGACGAGGTGGGGCTGGTG
GGAGGCCGGGATCCACGGCCCCCTCGCTCGCGACCGCAGGGAGGGGGGGG
TGGAGGGCAGAGGCATCAGGGAGGAGGGCGGGGACCGGGGGAAGCTGCGA
GTGGATATCGAGGGAAGGGGGGAGGAGGGGGGAGGAGGCCGGTGCAGCAG
AAGAAGAGTTGGTGGACAAGTGAGTTTAACAAGATGGATGGAGAGCTTGA
GGTGCCCTTGCCCTGGTGGGCGGAGGGAGCGAGGGAAGGAGGGATGGAGG
GGGATTGGAAGTATGGGGACAGGAAGGTGGTGGAGCTGAAGGAGGAGCTG
GCAAGGAGGGGGGCGAAAGTGAGTGGCACCAAGGCGGAGCTAATTGAGCG
GTTGGAGAGgtgagaaggggagggaaggatggatcgagggagagaggaaa
ggaaggacgtttctcttgtcagcggggaatagagggaaaggggggaggga
aagagagagggacatggaggccactcgatggtgcgacggacatgctacga
attactcgtttatacctgaatttaatttctttctcccaagcttcatattt
tcgtcctctgacttccacttatatacttcttcttccctttttccctgtct
tcctgttcctctttcccccccttagTCTCGACAAGCTCTACACCCTGACC
GACGACGGCTTCCGGGAAGTGACGATTTTGCATGACGAGGAGGAGGATTC
AAACCTCCCTCCGTGTTTCCCTAACACCTACGGCGATGAGTTCGAGCAGC
GCCTCCTGGAAGAGCAGGAGGCGGGTGTAGATGTCAAGAATTATGCTCCC
TAG
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protein sequence of NO18G01820.1

>NO18G01820.1-protein ID=NO18G01820.1-protein|Name=NO18G01820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MDSSCGSLTMRRRRRLTTPSSASASSLVLLLVLLSSSFFPAPTTHAFLLH
SFTPSVHLYGGSSSSSTISSSSSSSSSSSSSSSRSLHRALRMSDEAYYGE
GGDTKGGANARQQKRNRRPTRPPPPPVRRTDGEGGKGGGGPPRRGSGQGV
PQRDIAQLIERTGQNEPAWKRAVNLDEVGLVGGRDPRPPRSRPQGGGGGG
QRHQGGGRGPGEAASGYRGKGGGGGRRPVQQKKSWWTSEFNKMDGELEVP
LPWWAEGAREGGMEGDWKYGDRKVVELKEELARRGAKVSGTKAELIERLE
SLDKLYTLTDDGFREVTILHDEEEDSNLPPCFPNTYGDEFEQRLLEEQEA
GVDVKNYAP*
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Synonyms
Publications