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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr18 | genome | chr18:471959..475823 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO18G01420.1 vs.
Match: EWM23349.1 (hypothetical protein Naga_100057g14 [Nannochloropsis gaditana]) HSP 1 Score: 258.1 bits (658), Expect = 2.600e-65 Identity = 138/225 (61.33%), Postives = 166/225 (73.78%), Query Frame = 0
Query: 1 MKTSLAFLFIAGVAQGYVPTPITCPVGRISQRMTRFAPSHRTWSSMSMVMTARKDAEK-IPFHAFTSLVLKGGMMASAVFGGSFAVDMGGSSSGLLAPVQAAVVNLPRCEGGLGEGCAAMGEGEGELVKKLQERSAKNYESSKKQKLIKYNLNNFKDYFAVKNQKLVVKSDGKFIAIDNKVYKQLEKEGKVEGNYWVSKESPPADGTVDFIPAGSRNDGPTPDFS 225
M+ + LF+ G Q +VP R+ + +P+ R+ + A K + I A +LKGGM+ A+FGGSF + S++G++APV AAV+N+PRCEGGLG+GCAAMGEG E VKKLQERSAKNYESSKKQKLIKYNLNNFKDYFAVKNQKLVVK DGKFIAIDNK+YKQLEKEGKV+GNYW+SKE PP+DGTVDFIP GS+ND P PDF+
Sbjct: 20 MRAVVLLLFMMGPVQAFVP------------RIPKQSPTSRSEILIDDATAAAKSSTTPIIVRAIADSMLKGGMLVGAIFGGSFMAGLS-STTGIMAPVHAAVINMPRCEGGLGDGCAAMGEGN-EFVKKLQERSAKNYESSKKQKLIKYNLNNFKDYFAVKNQKLVVKPDGKFIAIDNKIYKQLEKEGKVDGNYWISKEDPPSDGTVDFIPGGSKNDAPAPDFT 230
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO18G01420.1 ID=NO18G01420.1|Name=NO18G01420.1|organism=Nannochloropsis oceanica|type=mRNA|length=3255bp CCTGCGGAGATGAATAACAAATCGGCGCTGAAAGCCTTGAGCTTCGGCAG CAACAACCTTTCCACCTTGTCCCTGAACTCTTCACTCGCCTTTCTGCAGA ACTCCCTCACTTTTTTGGGGCCTAGCCCTTTCGCCTTGGTCGACCCTGCT GTTGCTGTTGGCGGCCTGACGGGGGAGAGCTCCACGTTGATTATGTTCGG GTATGAGACCTCGTCATTCTCGACTTCTCGCCCCGAACAAGGGTAGAAAT GCGGGCCGTCCACCAGGTTGATGCTCCCGAAGAAGACGTTGTCGGCATCC TCTGCCTCGGACAGCCAGGGCTTGAACAGTTCGTAGGTCTGGGGTGCCCA GGAGGCAGGGAGGGGGAGAGCTAGTCGCGAGGGTTTCAGTGCTCTTACAC AGGCTTCCGTTCCATTTCCGTGGTGAATGTCAAAATCGATGATGGCGACT CGAGCGAAGGGCCCGGAGGGGGGACGGCCATAGGTTTGCCTAGCATATGC CGCGCCGACCGCCACGTTATTGATCAAACAAAATCCCGAGGAGCAGGAGG AGGGGGACTTCCAAAAGCAGTGGCTAGGCACAGCGCCTCGAGGACCGGCG TGGTGGCCCGGAGGACGGGTAGCAACAAAAATACGTTTGCGACCAGCGGC TGCTTGATCGACGGCTTGAATGACGGCCCCGGCAGCAACGCACGCCACTT GAAAGGATTCGCGACAAACACGCGTGTCAGAGTCTAAGAACTGAGAGACA ATGCCCTTGCCATCCTCGTCTTGAGGAAGACTTCCCGCCCGCTCCTTCTT GTCAAAAGCTTCACCGCTGCGGTCCTCCGGGCCTTGCCTTCGCCCGTACT GCTGCTGCTCCTGGGTAGGAGGGTGCCCTCCTTCCTCGCCCCCGCCTTCC TCCTCATCCTCCTCTCTGACCTCCGCCAGCGCTTTCAACAAATGCACGGG AAAGTCACGGATAGACGTGTGGTGCCGCACGCTTAGAGGCGCCCGCCTGC TGCTGTTGCTGCTGCTGCTGCTGCCGTTGCCGCTACAGCTACCTTTCATA TTGCTGCTGGCGTTGTAGGCAGAACCCTCTCTGGTAGAATTTTTCTCACC ATCTGCAGGGGAGGGTGCCTCAGAGGAAGAGGGAGAAAGGGAGTTCGGGG AAGCCAAGGAAGAGGGCCGCAGCAGCTCCGCCGGAGGTTGGGCGGGGGAA TGCCGGGGCTGGAAGAGGGCGGGCAAGGTGGCGAGGAGAGAAGAAGAATC TCCTTCCACTCCTTCTCCTCCCTGCTTTTCCTGGCAGCAAGGGGTGGGCG GCAACGAGTTGCAAATGTTTTGCAAATGCCGGATGTAATCATACTCATGT ACACGAAGCAAGTCCGAGGTGGTAGCAGGAGCGAAATTCGTTCCATCTGC CCATTCCAGGTTCGCAAACCGCTTCCGTCTCAAAACCCCTTTATGCGGGT CCACCAAGCATACTAATCGATCCACACTCTCTTGATGATTTAGCGTCTCA TGTTGGAGGCAGACAGGAGGATAAATGACGAGCATGCGAGTCGACATGGC GGCACTCATCACCTCCTGCGACGGCGGTGGGGGAGGAAAAGCCGCTCCTC CAAAAGAATACAAGGCTGATTCCCCCGGAGATTGCGGAGGTATGCTCTGT TTGAGGGCCCGAATACCCATGGGGGTGTCGTTCCCGTTACTTTTTTTGGT TGAGGGAAGAGTAGTGGAAAAAGCGCAGTTGAGCATGCTTCCTGGTTGGC CTTCGCCTTCCAGCTGCATCTCGACTGAATTAACGGAGCACAGGCGACTT ATACTAGGCGAAGACAGCTCCCGTTTGTGCATGCCGGGAGGGTGGAAGGA AGGCGGTGGAGGGGGCACTACTGTTGTCAACAATGGCGGAGGCGGGGCCG TGGAAGAAGAGGACGAGGACGAAGAAATCTGATTCTCCTGTTGCAGCTGT TGCAGACTCACTTGGCGATGAAACTGCTCACTCAAGAAGTCCTCCGACTC TTGGCTGGGAGCGACGCTGTCGTAATAGGGCGGAGAAGCCATGCTGGCGC TGCTGCTGGCTCCACTGCTGCTGGCTCCACTGCTGCGCCGGCTGCTGCTC CCGTCAACATCTCCTTTCTCCTCGTCGGGAGGCGGCGAAAGGCTATTTGT GTTGCGTCGAGTCGTCCGCCGAGCCGCCATTTAAGTACTAATCGATGCCG ATGGTATGTTGGTGCTTATGCGTGTCGCTGATGTGGATGGGTGCGCTTGG AAGCGTAAGAATGGTACGGGGGCTCCCCAATATATTATGCATCTCGGGAG TTTATAACGAAGCTTCTTTGCGCCTCCTCCTACCTGCATCCAACTTTCAT CATCACTTTTTGCTCCTCAATCCCACCGCAGTACAAGACAGGCCGAACAA TGAAGACGTCTTTGGCCTTCCTGTTCATTGCTGGTGTTGCTCAAGGGTAC GTCCCCACACCCATTACATGCCCGGTTGGGAGGATTTCCCAGCGCATGAC GCGGTTCGCTCCAAGCCACAGAACTTGGAGCAGCATGAGCATGGTGATGA CGGCACGAAAGGATGCGGAGAAAATACCTTTCCATGCATTCACATCCCTG GTACTCAAGGGCGGCATGATGGCGAGTGCTGTCTTTGGCGGTAGCTTTGC AGTGGACATGGGGGGCAGCAGCAGCGGATTATTAGCACCTGTGCAAGCCG CAGTGGTCAATTTGCCTCGTTGCGAAGGCGGGCTGGGCGAAGGGTGCGCA GCCATGGGGGAAGGGGAGGGCGAGCTCGTGAAGAAGCTCCAGGAGCGGTC GGCAAAGAACTATGAGTCTAGCAAGAAGCAAAAGTTGATAAAATACAACC TCAATAACTTCAAGGACTACTTCGCGGTCAAGAACCAAAAGCTCGTGGTC AAGTCTGACGGGAAATTCATCGCCATTGACAACAAAGTCTACAAGCAGCT AGAGAAGGAGGGCAAAGTGGAAGGAAACTACTGGGTGTCGAAGGAGTCTC CACCGGCAGATGGTACGGTTGACTTTATTCCGGCAGGAAGTAGGAATGAC GGGCCGACGCCTGACTTTTCGACGAACTAAGGAACATGGGGAGGATGAAT TTTGGCGTGCAAGGCAGTGAAGCAGTGTTGTTTCTGAGTTTCTAGCTTGG AATTAGATAGCAACAAAAGAAATCAATATGAAGGGCGAATGAGAATGTGA AAAATAGGGTACGGAAATTGCTGCGACGTCTTCCTTGGTTTTCCTCTTCG CAGGT back to topprotein sequence of NO18G01420.1 >NO18G01420.1-protein ID=NO18G01420.1-protein|Name=NO18G01420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp MKTSLAFLFIAGVAQGYVPTPITCPVGRISQRMTRFAPSHRTWSSMSMVM TARKDAEKIPFHAFTSLVLKGGMMASAVFGGSFAVDMGGSSSGLLAPVQA AVVNLPRCEGGLGEGCAAMGEGEGELVKKLQERSAKNYESSKKQKLIKYN LNNFKDYFAVKNQKLVVKSDGKFIAIDNKVYKQLEKEGKVEGNYWVSKES PPADGTVDFIPAGSRNDGPTPDFSTN* back to topmRNA from alignment at chr18:471959..475823+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO18G01420.1 ID=NO18G01420.1|Name=NO18G01420.1|organism=Nannochloropsis oceanica|type=mRNA|length=3865bp|location=Sequence derived from alignment at chr18:471959..475823+ (Nannochloropsis oceanica) CCTGCGGAGATGAATAACAAATCGGCGCTGAAAGCCTTGAGCTTCGGCAG
CAACAACCTTTCCACCTTGTCCCTGAACTCTTCACTCGCCTTTCTGCAGA
ACTCCCTCACTTTTTTGGGGCCTAGCCCTTTCGCCTTGGTCGACCCTGCT
GTTGCTGTTGGCGGCCTGACGGGGGAGAGCTCCACGTTGATTATGTTCGG
GTATGAGACCTCGTCATTCTCGACTTCTCGCCCCGAACAAGGGTAGAAAT
GCGGGCCGTCCACCAGGTTGATGCTCCCGAAGAAGACGTTGTCGGCATCC
TCTGCCTCGGACAGCCAGGGCTTGAACAGTTCGTAGGTCTGGGGTGCCCA
GGAGGCAGGGAGGGGGAGAGCTAGTCGCGAGGGTTTCAGTGCTCTTACAC
AGGCTTCCGTTCCATTTCCGTGGTGAATGTCAAAATCGATGATGGCGACT
CGAGCGAAGGGCCCGGAGGGGGGACGGCCATAGGTTTGCCTAGCATATGC
CGCGCCGACCGCCACGTTATTGATCAAACAAAATCCCGAGGAGCAGGAGG
AGGGGGACTTCCAAAAGCAGTGGCTAGGCACAGCGCCTCGAGGACCGGCG
TGGTGGCCCGGAGGACGGGTAGCAACAAAAATACGTTTGCGACCAGCGGC
TGCTTGATCGACGGCTTGAATGACGGCCCCGGCAGCAACGCACGCCACTT
GAAAGGATTCGCGACAAACACGCGTGTCAGAGTCTAAGAACTGAGAGACA
ATGCCCTTGCCATCCTCGTCTTGAGGAAGACTTCCCGCCCGCTCCTTCTT
GTCAAAAGCTTCACCGCTGCGGTCCTCCGGGCCTTGCCTTCGCCCGTACT
GCTGCTGCTCCTGGGTAGGAGGGTGCCCTCCTTCCTCGCCCCCGCCTTCC
TCCTCATCCTCCTCTCTGACCTCCGCCAGCGCTTTCAACAAATGCACGGG
AAAGTCACGGATAGACGTGTGGTGCCGCACGCTTAGAGGCGCCCGCCTGC
TGCTGTTGCTGCTGCTGCTGCTGCCGTTGCCGCTACAGCTACCTTTCATA
TTGCTGCTGGCGTTGTAGGCAGAACCCTCTCTGGTAGAATTTTTCTCACC
ATCTGCAGGGGAGGGTGCCTCAGAGGAAGAGGGAGAAAGGGAGTTCGGGG
AAGCCAAGGAAGAGGGCCGCAGCAGCTCCGCCGGAGGTTGGGCGGGGGAA
TGCCGGGGCTGGAAGAGGGCGGGCAAGGTGGCGAGGAGAGAAGAAGAATC
TCCTTCCACTCCTTCTCCTCCCTGCTTTTCCTGGCAGCAAGGGGTGGGCG
GCAACGAGTTGCAAATGTTTTGCAAATGCCGGATGTAATCATACTCATGT
ACACGAAGCAAGTCCGAGGTGGTAGCAGGAGCGAAATTCGTTCCATCTGC
CCATTCCAGGTTCGCAAACCGCTTCCGTCTCAAAACCCCTTTATGCGGGT
CCACCAAGCATACTAATCGATCCACACTCTCTTGATGATTTAGCGTCTCA
TGTTGGAGGCAGACAGGAGGATAAATGACGAGCATGCGAGTCGACATGGC
GGCACTCATCACCTCCTGCGACGGCGGTGGGGGAGGAAAAGCCGCTCCTC
CAAAAGAATACAAGGCTGATTCCCCCGGAGATTGCGGAGGTATGCTCTGT
TTGAGGGCCCGAATACCCATGGGGGTGTCGTTCCCGTTACTTTTTTTGGT
TGAGGGAAGAGTAGTGGAAAAAGCGCAGTTGAGCATGCTTCCTGGTTGGC
CTTCGCCTTCCAGCTGCATCTCGACTGAATTAACGGAGCACAGGCGACTT
ATACTAGGCGAAGACAGCTCCCGTTTGTGCATGCCGGGAGGGTGGAAGGA
AGGCGGTGGAGGGGGCACTACTGTTGTCAACAATGGCGGAGGCGGGGCCG
TGGAAGAAGAGGACGAGGACGAAGAAATCTGATTCTCCTGTTGCAGCTGT
TGCAGACTCACTTGGCGATGAAACTGCTCACTCAAGAAGTCCTCCGACTC
TTGGCTGGGAGCGACGCTGTCGTAATAGGGCGGAGAAGCCATGCTGGCGC
TGCTGCTGGCTCCACTGCTGCTGGCTCCACTGCTGCGCCGGCTGCTGCTC
CCGTCAACATCTCCTTTCTCCTCGTCGGGAGGCGGCGAAAGGCTATTTGT
GTTGCGTCGAGTCGTCCGCCGAGCCGCCATTTAAGTACTAATCGATGCCG
ATGGTATGTTGGTGCTTATGCGTGTCGCTGATGTGGATGGGTGCGCTTGG
AAGCGTAAGAATGGTACGGGGGCTCCCCAATATATTATGCATCTCGGGAG
TTTATAACGAAGCTTCTTTGCGCCTCCTCCTACCTGCATCCAACTTTCAT
CATCACTTTTTGCTCCTCAATCCCACCGCAGTACAAGACAGGCCGAACAA
TGAAGACGTCTTTGGCCTTCCTGTTCATTGCTGGTGTTGCTCAAGGTACG
TTGCTATATTAGAGTTGCACTATGCTTAGCAAGGCGTCGGGGTTGGACAT
CAGACAGCGATGGCACGACGCCGTATTCTATATCCACCTTCTCACACCAC
ACACTCGACAGGGTACGTCCCCACACCCATTACATGCCCGGTTGGGAGGA
TTTCCCAGCGCATGACGCGGTTCGCTCCAAGCCACAGAACTTGGAGCAGC
ATGAGCATGGTGATGACGGCACGAAAGGATGCGGAGAAAATGTCAGTAGG
CCGCTTTCCCAGCATGATATATACAATTGGTGAGCCTTAATTTAAGGTTA
TATTTCTCGCTCCACCATGTCCTTTCCTCCCAGACCTTTCCATGCATTCA
CATCCCTGGTACTCAAGGGCGGCATGATGGCGAGTGCTGTCTTTGGCGGT
AGCTTTGCAGTGGACATGGGGGGCAGCAGCAGCGGATTATTAGCACCTGG
TACGTTGTATAGGGGTGGTAGTAGGATTATCGTTTGTACGCGTGTTTGAG
TAATGTGCCGCCTCCAGCATCCCCTCTTCCAGGCTTCTCGTTCTCCACGC
CGCATGACTCACTTCTTTTCTTAGGCATCAGCTAAATCTCAATATGAGGA
GCTAACATTCTTTGTATCTTTTGCATATAATATAATCTACCAGTGCAAGC
CGCAGTGGTCAATTTGCCTCGTTGCGAAGGCGGGCTGGGCGAAGGGTGCG
CAGCCATGGGGGAAGGGGAGGGCGAGCTCGTGAAGAAGCTCCAGGAGCGG
TCGGCAAAGAACTATGTATGTACAGAGCCGAGAGTAGTGATTGAAAATCA
ACGATCGTCTGCTGCATATAAATGTTGTGGCTAGACGTATGCAGGTTTTT
AATCTACACGAATTCGGGGGGGGGGCTTGAATGACAAGTGTGAGACTGAG
AGACGACAAGGTTGCATGGATTAGTATAATCACACGTTCCCTTCCTCCCT
CCCTTCCTACTGCTCAATTAAAGGAGTCTAGCAAGAAGCAAAAGTTGATA
AAATACAACCTCAATAACTTCAAGGACTACTTCGCGGTCAAGAACCAAAA
GCTCGTGGTCAAGTCTGACGGGAAATTCATCGCCATTGACAACAAAGTCT
ACAAGCAGCTAGAGAAGGAGGGCAAAGTGGAAGGAAACTACTGGGTGTCG
AAGGAGTCTCCACCGGCAGATGGTACGGTTGACTTTATTCCGGCAGGAAG
TAGGAATGACGGGCCGACGCCTGACTTTTCGACGAACTAAGGAACATGGG
GAGGATGAATTTTGGCGTGCAAGGCAGTGAAGCAGTGTTGTTTCTGAGTT
TCTAGCTTGGAATTAGATAGCAACAAAAGAAATCAATATGAAGGGCGAAT
GAGAATGTGAAAAATAGGGTACGGAAATTGCTGCGACGTCTTCCTTGGTT
TTCCTCTTCGCAGGT back to topCoding sequence (CDS) from alignment at chr18:471959..475823+ >NO18G01420.1 ID=NO18G01420.1|Name=NO18G01420.1|organism=Nannochloropsis oceanica|type=CDS|length=681bp|location=Sequence derived from alignment at chr18:471959..475823+ (Nannochloropsis oceanica) ATGAAGACGTCTTTGGCCTTCCTGTTCATTGCTGGTGTTGCTCAAGGGTA CGTCCCCACACCCATTACATGCCCGGTTGGGAGGATTTCCCAGCGCATGA CGCGGTTCGCTCCAAGCCACAGAACTTGGAGCAGCATGAGCATGGTGATG ACGGCACGAAAGGATGCGGAGAAAATACCTTTCCATGCATTCACATCCCT GGTACTCAAGGGCGGCATGATGGCGAGTGCTGTCTTTGGCGGTAGCTTTG CAGTGGACATGGGGGGCAGCAGCAGCGGATTATTAGCACCTGTGCAAGCC GCAGTGGTCAATTTGCCTCGTTGCGAAGGCGGGCTGGGCGAAGGGTGCGC AGCCATGGGGGAAGGGGAGGGCGAGCTCGTGAAGAAGCTCCAGGAGCGGT CGGCAAAGAACTATGAGTCTAGCAAGAAGCAAAAGTTGATAAAATACAAC CTCAATAACTTCAAGGACTACTTCGCGGTCAAGAACCAAAAGCTCGTGGT CAAGTCTGACGGGAAATTCATCGCCATTGACAACAAAGTCTACAAGCAGC TAGAGAAGGAGGGCAAAGTGGAAGGAAACTACTGGGTGTCGAAGGAGTCT CCACCGGCAGATGGTACGGTTGACTTTATTCCGGCAGGAAGTAGGAATGA CGGGCCGACGCCTGACTTTTCGACGAACTAA back to top
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