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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr18 | genome | chr18:467698..469217 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO18G01390.1 vs.
Match: EWM23362.1 (hypothetical protein Naga_100057g11 [Nannochloropsis gaditana]) HSP 1 Score: 337.4 bits (864), Expect = 7.000e-89 Identity = 202/465 (43.44%), Postives = 274/465 (58.92%), Query Frame = 0
Query: 5 VPMPSLP-PSVAILSTDLVVFMLQFLGAKDTARMCRISSAFHHLVQANDEALFRPHVLRQRLVSQPIPLTPQQNLAAAHTLRTALAPPGGWKGLYHVTKYLLGVPCLGYFRRVPRDFGTDYKGQLMRLR-PTLEVNVGVEISSNF-RPTPGLGLSLEVLTPTGT-SITNGTSFFRLCEQRETAHGLCMKGRTVDQKIEIEWCAHIAV--RGHEDEDDAAGSQNSNEDGQSPCFDMTLHPDEMVDGQTIIIQQCFHALLSEPPSLMLCESA-YCQELEGLRGFWVGTYGSHGQEIIQVRFTTTNKATATTTDDVSTTAGIAVAPVAVPLPVIMEGIKIVGDANVPANEWSFRVDVSTGPLDKARALGADMRPVYTLDSHMQPRPRILSQEAGRIQSVYRGKGQINMVPGIWSPQEVGVDVVVLRPEENEGKGGLWVIWHDVEYTSRHCIDLTRLVETKADEEHHGQ 463
V PS P P + LS D ++ +LQFL D R+C + + V +DE LF+ HVL ++LVS P P+T +Q + AA TL+TALA GGW+GL +VT+++ G PCLGYFR++PRDF +D++G+L R+R EV+ R G GL LE +T + T + +R Q G C+ G D + ++W A + RG ED AA +Q CF+ + AL P L L S +E E L+G W G YGSHG EIIQVR T G A ++ VI+EG+K+VGDANVPANEW+FR DV+ PLD+A ALGAD RP+Y+L + M P+ +L++EAGRI++VYRGKGQ+NMVPGIW PQEVGVDV++LR EEN G+GG+W++WHD ++SRHCI+LTRL+E + E G+
Sbjct: 4 VTTPSTPRPFLGTLSGDTLLTVLQFLEVADGTRVCLVCPYLNKSVCEHDEVLFKAHVLNEQLVSLPTPVTLKQKVRAAQTLQTALALKGGWRGLSYVTRHVTGRPCLGYFRQIPRDFRSDFRGKLFRVRLEDTEVSDMAWAPEGLPRGREGRGLVLEEVTFSCTHEVVKALRLYRAPGQS----GSCLGG-VCDGEPLVKWTARVEPKGRGRSREDRAADTQ--------VCFE--------------VFHSRVGALHPLAPCLSLSASGGQLREFEDLQGLWRGVYGSHGWEIIQVRLRRL------------WTDGSAGTSPSIGGRVILEGLKLVGDANVPANEWTFRADVTAPPLDRAEALGADTRPIYSLTTRMVPQSWVLAEEAGRIRAVYRGKGQVNMVPGIWEPQEVGVDVMLLRREENGGRGGIWLLWHDEGFSSRHCIELTRLIEGEEAGEGEGR 429
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO18G01390.1 ID=NO18G01390.1|Name=NO18G01390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1413bp ATGGCTGACGCAGTACCGATGCCCTCGTTGCCGCCTTCCGTAGCCATCCT CTCCACTGACCTAGTGGTCTTTATGCTGCAATTTCTTGGCGCCAAAGACA CGGCGCGCATGTGCCGAATTAGCTCTGCCTTCCACCATCTTGTCCAGGCG AATGACGAGGCCCTTTTTCGCCCGCACGTGCTTAGGCAGCGTCTGGTCTC CCAACCCATCCCCCTTACGCCCCAGCAGAACCTTGCCGCTGCCCATACCT TGCGAACCGCCTTGGCGCCACCGGGCGGTTGGAAAGGGCTGTATCACGTC ACGAAGTACTTGCTAGGAGTGCCGTGCCTTGGATACTTCCGGCGCGTGCC CCGAGATTTCGGAACGGATTACAAAGGACAGCTCATGCGTCTGCGGCCCA CCCTCGAGGTGAATGTTGGTGTAGAGATAAGCAGCAACTTCCGTCCCACG CCGGGGCTTGGGCTGTCTCTGGAAGTTCTCACGCCCACAGGAACGAGTAT TACAAATGGTACTTCTTTCTTTCGGCTATGTGAACAGCGAGAGACAGCAC ACGGCTTGTGCATGAAAGGGCGCACAGTCGACCAGAAAATCGAGATAGAA TGGTGCGCCCACATTGCGGTTAGAGGCCACGAAGACGAGGACGATGCGGC AGGCAGTCAGAACTCTAACGAAGATGGGCAAAGTCCTTGTTTCGACATGA CCCTTCACCCGGATGAGATGGTGGACGGCCAGACAATTATTATTCAACAA TGTTTTCACGCATTGCTTTCAGAGCCACCGTCACTGATGCTCTGTGAAAG TGCCTACTGCCAAGAGCTGGAGGGCCTGCGTGGATTTTGGGTGGGGACGT ATGGGAGCCACGGGCAGGAGATCATCCAAGTGCGTTTCACGACCACAAAC AAGGCGACTGCGACTACAACAGACGACGTCAGCACTACAGCAGGGATAGC AGTAGCACCAGTGGCAGTACCACTACCCGTCATTATGGAGGGCATAAAGA TCGTGGGTGACGCCAACGTGCCCGCGAACGAGTGGTCATTCCGCGTGGAC GTGTCGACCGGGCCACTCGACAAGGCTCGAGCTCTCGGAGCAGACATGCG GCCTGTCTACACGCTTGACAGCCACATGCAGCCCAGGCCTCGTATCTTGT CGCAGGAGGCGGGCCGGATTCAGTCAGTTTATCGGGGCAAAGGGCAGATT AACATGGTGCCTGGAATTTGGAGCCCACAGGAGGTGGGGGTGGATGTTGT GGTGTTACGACCAGAGGAAAATGAGGGAAAGGGCGGGTTGTGGGTGATCT GGCATGATGTGGAGTATACTTCCCGACATTGTATCGACTTGACTCGCTTA GTGGAGACGAAAGCGGACGAGGAACATCACGGACAACAGGAAGAAGACAA TATGGGGGACTGA back to topprotein sequence of NO18G01390.1 >NO18G01390.1-protein ID=NO18G01390.1-protein|Name=NO18G01390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=471bp MADAVPMPSLPPSVAILSTDLVVFMLQFLGAKDTARMCRISSAFHHLVQA NDEALFRPHVLRQRLVSQPIPLTPQQNLAAAHTLRTALAPPGGWKGLYHV TKYLLGVPCLGYFRRVPRDFGTDYKGQLMRLRPTLEVNVGVEISSNFRPT PGLGLSLEVLTPTGTSITNGTSFFRLCEQRETAHGLCMKGRTVDQKIEIE WCAHIAVRGHEDEDDAAGSQNSNEDGQSPCFDMTLHPDEMVDGQTIIIQQ CFHALLSEPPSLMLCESAYCQELEGLRGFWVGTYGSHGQEIIQVRFTTTN KATATTTDDVSTTAGIAVAPVAVPLPVIMEGIKIVGDANVPANEWSFRVD VSTGPLDKARALGADMRPVYTLDSHMQPRPRILSQEAGRIQSVYRGKGQI NMVPGIWSPQEVGVDVVVLRPEENEGKGGLWVIWHDVEYTSRHCIDLTRL VETKADEEHHGQQEEDNMGD* back to topmRNA from alignment at chr18:467698..469217+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO18G01390.1 ID=NO18G01390.1|Name=NO18G01390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1520bp|location=Sequence derived from alignment at chr18:467698..469217+ (Nannochloropsis oceanica) ATGGCTGACGCAGTACCGATGCCCTCGTTGCCGCCTTCCGTAGGTGAGTC
TCGTATGTCTACACACGTAGGGCTTTCCTTTTTTCTCTTTCCACGCGTAC
GCTCCCTCCACCGCCTTCACATCAAACCCTTCCGCACCCCTGTCCCGTAG
CCATCCTCTCCACTGACCTAGTGGTCTTTATGCTGCAATTTCTTGGCGCC
AAAGACACGGCGCGCATGTGCCGAATTAGCTCTGCCTTCCACCATCTTGT
CCAGGCGAATGACGAGGCCCTTTTTCGCCCGCACGTGCTTAGGCAGCGTC
TGGTCTCCCAACCCATCCCCCTTACGCCCCAGCAGAACCTTGCCGCTGCC
CATACCTTGCGAACCGCCTTGGCGCCACCGGGCGGTTGGAAAGGGCTGTA
TCACGTCACGAAGTACTTGCTAGGAGTGCCGTGCCTTGGATACTTCCGGC
GCGTGCCCCGAGATTTCGGAACGGATTACAAAGGACAGCTCATGCGTCTG
CGGCCCACCCTCGAGGTGAATGTTGGTGTAGAGATAAGCAGCAACTTCCG
TCCCACGCCGGGGCTTGGGCTGTCTCTGGAAGTTCTCACGCCCACAGGAA
CGAGTATTACAAATGGTACTTCTTTCTTTCGGCTATGTGAACAGCGAGAG
ACAGCACACGGCTTGTGCATGAAAGGGCGCACAGTCGACCAGAAAATCGA
GATAGAATGGTGCGCCCACATTGCGGTTAGAGGCCACGAAGACGAGGACG
ATGCGGCAGGCAGTCAGAACTCTAACGAAGATGGGCAAAGTCCTTGTTTC
GACATGACCCTTCACCCGGATGAGATGGTGGACGGCCAGACAATTATTAT
TCAACAATGTTTTCACGCATTGCTTTCAGAGCCACCGTCACTGATGCTCT
GTGAAAGTGCCTACTGCCAAGAGCTGGAGGGCCTGCGTGGATTTTGGGTG
GGGACGTATGGGAGCCACGGGCAGGAGATCATCCAAGTGCGTTTCACGAC
CACAAACAAGGCGACTGCGACTACAACAGACGACGTCAGCACTACAGCAG
GGATAGCAGTAGCACCAGTGGCAGTACCACTACCCGTCATTATGGAGGGC
ATAAAGATCGTGGGTGACGCCAACGTGCCCGCGAACGAGTGGTCATTCCG
CGTGGACGTGTCGACCGGGCCACTCGACAAGGCTCGAGCTCTCGGAGCAG
ACATGCGGCCTGTCTACACGCTTGACAGCCACATGCAGCCCAGGCCTCGT
ATCTTGTCGCAGGAGGCGGGCCGGATTCAGTCAGTTTATCGGGGCAAAGG
GCAGATTAACATGGTGCCTGGAATTTGGAGCCCACAGGAGGTGGGGGTGG
ATGTTGTGGTGTTACGACCAGAGGAAAATGAGGGAAAGGGCGGGTTGTGG
GTGATCTGGCATGATGTGGAGTATACTTCCCGACATTGTATCGACTTGAC
TCGCTTAGTGGAGACGAAAGCGGACGAGGAACATCACGGACAACAGGAAG
AAGACAATATGGGGGACTGA back to topCoding sequence (CDS) from alignment at chr18:467698..469217+ >NO18G01390.1 ID=NO18G01390.1|Name=NO18G01390.1|organism=Nannochloropsis oceanica|type=CDS|length=1413bp|location=Sequence derived from alignment at chr18:467698..469217+ (Nannochloropsis oceanica) ATGGCTGACGCAGTACCGATGCCCTCGTTGCCGCCTTCCGTAGCCATCCT CTCCACTGACCTAGTGGTCTTTATGCTGCAATTTCTTGGCGCCAAAGACA CGGCGCGCATGTGCCGAATTAGCTCTGCCTTCCACCATCTTGTCCAGGCG AATGACGAGGCCCTTTTTCGCCCGCACGTGCTTAGGCAGCGTCTGGTCTC CCAACCCATCCCCCTTACGCCCCAGCAGAACCTTGCCGCTGCCCATACCT TGCGAACCGCCTTGGCGCCACCGGGCGGTTGGAAAGGGCTGTATCACGTC ACGAAGTACTTGCTAGGAGTGCCGTGCCTTGGATACTTCCGGCGCGTGCC CCGAGATTTCGGAACGGATTACAAAGGACAGCTCATGCGTCTGCGGCCCA CCCTCGAGGTGAATGTTGGTGTAGAGATAAGCAGCAACTTCCGTCCCACG CCGGGGCTTGGGCTGTCTCTGGAAGTTCTCACGCCCACAGGAACGAGTAT TACAAATGGTACTTCTTTCTTTCGGCTATGTGAACAGCGAGAGACAGCAC ACGGCTTGTGCATGAAAGGGCGCACAGTCGACCAGAAAATCGAGATAGAA TGGTGCGCCCACATTGCGGTTAGAGGCCACGAAGACGAGGACGATGCGGC AGGCAGTCAGAACTCTAACGAAGATGGGCAAAGTCCTTGTTTCGACATGA CCCTTCACCCGGATGAGATGGTGGACGGCCAGACAATTATTATTCAACAA TGTTTTCACGCATTGCTTTCAGAGCCACCGTCACTGATGCTCTGTGAAAG TGCCTACTGCCAAGAGCTGGAGGGCCTGCGTGGATTTTGGGTGGGGACGT ATGGGAGCCACGGGCAGGAGATCATCCAAGTGCGTTTCACGACCACAAAC AAGGCGACTGCGACTACAACAGACGACGTCAGCACTACAGCAGGGATAGC AGTAGCACCAGTGGCAGTACCACTACCCGTCATTATGGAGGGCATAAAGA TCGTGGGTGACGCCAACGTGCCCGCGAACGAGTGGTCATTCCGCGTGGAC GTGTCGACCGGGCCACTCGACAAGGCTCGAGCTCTCGGAGCAGACATGCG GCCTGTCTACACGCTTGACAGCCACATGCAGCCCAGGCCTCGTATCTTGT CGCAGGAGGCGGGCCGGATTCAGTCAGTTTATCGGGGCAAAGGGCAGATT AACATGGTGCCTGGAATTTGGAGCCCACAGGAGGTGGGGGTGGATGTTGT GGTGTTACGACCAGAGGAAAATGAGGGAAAGGGCGGGTTGTGGGTGATCT GGCATGATGTGGAGTATACTTCCCGACATTGTATCGACTTGACTCGCTTA GTGGAGACGAAAGCGGACGAGGAACATCACGGACAACAGGAAGAAGACAA TATGGGGGACTGA back to top
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