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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr18 | genome | chr18:455802..457610 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO18G01350.1 vs.
Match: XP_005855972.1 (hypothetical protein NGA_0523700, partial [Nannochloropsis gaditana CCMP526]; EKU20381.1 hypothetical protein NGA_0523700, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 278.9 bits (712), Expect = 2.500e-71 Identity = 173/273 (63.37%), Postives = 203/273 (74.36%), Query Frame = 0
Query: 119 PCARGRGSAQCEEDAKYDMAPSGLDSDEERFGGTGGGQKRRRQERRWAKDALRDNEYIEELESQALKKRKKQLPQASIQPKQPNESMKAFQHRVRQDQKALLRESNLANSTTKTRRREYMKKKKQDKKRKAQGLPALPDPRAEVEDKEEEEEHGERASQRAWMGPVPSFARAESITFGERNDAPPNLRLPRLPYERKAQAQSVAAAEARQKQTGKERVEKRELKRWVTGRKEEGQSAAAAAARTKQPPAEKAKWARLREEAQQAYRTMKEGKQ 392
PCARG+ A EEDAKYD+ P+GLDSDEE+ GGG+KRRRQERRWA+DALRD+EYIE LE++A +KRKKQLP+ SIQP+QPNESMKAFQHRVRQD KALLRESNLANSTTK RRREY++ +K +KKRKAQGLP LP +EE R +Q M P PSFA AE++ FG+ NDAPP+L LPRLP + KA A+ + + Q R ++ELK +G K EG A AAAAR KQ PAEKA WA+LREEAQQAYR MKEGKQ
Sbjct: 1 PCARGQ--APREEDAKYDLPPAGLDSDEEK----GGGRKRRRQERRWAQDALRDDEYIEMLENEATRKRKKQLPEISIQPRQPNESMKAFQHRVRQDSKALLRESNLANSTTKARRREYLRIRKANKKRKAQGLPPLP------HRSRGQEECDGRENQGGLMDPAPSFAAAETVPFGQTNDAPPDLHLPRLPDKLKAGARPIDGRHGQAPQRPGGR--RQELKANESGEK-EGPVAKAAAARAKQSPAEKADWAKLREEAQQAYRAMKEGKQ 258
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO18G01350.1 ID=NO18G01350.1|Name=NO18G01350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1333bp GGATACGCTGGCTGCTTGCGTAACGCCACATCGTTTCGCTCATGGCCCAC CGATGGAGTGTGCTTTGGGTTGCCCAACCACCGACTGGCAACGACCAAAA GGTAAGTAAATCATGCAGGAAACACGGTCATATCATAAAGCATGTGGTTA TAAAGAAACGAGGCCGTTGGTGACAGAACCCGATTCGGAAACAGAGGCCC GCTGGACACCAAGACTTTGTCTCTGGCAGTTGGGTCGGGGGAGGAGTTTC CCACGTTTCCTCGCGGGGGCAACGATCACGATTGAGCTTTTTCAAAATGC TTCGCTCCCCATTTTTGCGCCAAAGCTCATTTCACAAAAGCTGTCATACT ATGTGGCACTCTGCTTATGCATGCATGACCCAACGAGATCAAGATCCCGT CACATCCTCGACACAGGAAGCAAGATGGGGCGGGTCCGGCGGTATAAGAA GCTCAAGGCCTGTGATCCTTGTGCGCGCGGGCGGGGCTCAGCGCAGTGCG AAGAGGATGCCAAGTATGATATGGCCCCGTCAGGGCTTGACTCGGACGAG GAGAGATTTGGCGGAACAGGCGGCGGCCAAAAAAGACGGCGACAAGAGCG ACGATGGGCAAAAGATGCCTTAAGGGACAACGAATATATCGAGGAGCTCG AGAGCCAAGCCTTGAAGAAGCGAAAGAAGCAACTGCCGCAGGCCTCCATC CAACCCAAGCAGCCGAATGAGAGCATGAAGGCCTTCCAACACCGCGTCAG ACAAGATCAAAAAGCGCTCCTCCGCGAAAGCAATTTGGCAAACAGTACTA CCAAGACCCGGCGTCGTGAGTACATGAAAAAGAAGAAGCAGGACAAGAAA CGCAAGGCTCAGGGTCTGCCTGCTCTCCCTGACCCTCGAGCAGAGGTCGA AGACAAGGAGGAGGAGGAGGAGCACGGGGAGCGTGCAAGTCAGCGCGCGT GGATGGGGCCGGTGCCATCGTTTGCACGAGCAGAATCGATAACATTTGGG GAGAGGAACGATGCGCCGCCAAATTTGCGCTTACCTCGTTTGCCGTATGA GCGCAAGGCTCAAGCTCAATCCGTCGCTGCGGCCGAAGCAAGGCAAAAAC AGACTGGAAAGGAGAGAGTAGAGAAGAGGGAGTTGAAGAGGTGGGTGACA GGCAGGAAGGAGGAGGGGCAAAGTGCAGCGGCGGCGGCTGCGAGGACGAA GCAACCACCTGCGGAGAAGGCAAAGTGGGCCCGGCTGAGAGAGGAGGCCC AGCAAGCCTACCGCACTATGAAGGAAGGCAAGCAGGGTTCGGTCAAAACA TAAAGAAAGACAAGATACACTCGATGCTTGAGT back to topprotein sequence of NO18G01350.1 >NO18G01350.1-protein ID=NO18G01350.1-protein|Name=NO18G01350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=397bp MQETRSYHKACGYKETRPLVTEPDSETEARWTPRLCLWQLGRGRSFPRFL AGATITIELFQNASLPIFAPKLISQKLSYYVALCLCMHDPTRSRSRHILD TGSKMGRVRRYKKLKACDPCARGRGSAQCEEDAKYDMAPSGLDSDEERFG GTGGGQKRRRQERRWAKDALRDNEYIEELESQALKKRKKQLPQASIQPKQ PNESMKAFQHRVRQDQKALLRESNLANSTTKTRRREYMKKKKQDKKRKAQ GLPALPDPRAEVEDKEEEEEHGERASQRAWMGPVPSFARAESITFGERND APPNLRLPRLPYERKAQAQSVAAAEARQKQTGKERVEKRELKRWVTGRKE EGQSAAAAAARTKQPPAEKAKWARLREEAQQAYRTMKEGKQGSVKT* back to topmRNA from alignment at chr18:455802..457610+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO18G01350.1 ID=NO18G01350.1|Name=NO18G01350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1809bp|location=Sequence derived from alignment at chr18:455802..457610+ (Nannochloropsis oceanica) GGATACGCTGGCTGCTTGCGTAACGCCACATCGTTTCGCTCATGGCCCAC
CGATGGAGTGTGCTTTGGGTTGCCCAACCACCGACTGGCAACGACCAAAA
GGTAAGTAAATCATGCAGGAAACACGGTCATATCATAAAGCATGTGGTTA
TAAAGAAACGAGGCCGTTGGTGACAGAACCCGATTCGGAAACAGAGGCCC
GCTGGACACCAAGACTTTGTCTCTGGCAGTTGGGTCGGGGGAGGAGTTTC
CCACGTTTCCTCGCGGGGGCAACGATCACGATTGAGCTTTTTCAAAATGC
TTCGCTCCCCATTTTTGCGCCAAAGCTCATTTCACAAAAGCTGTCATACT
ATGTGGCACTCTGCTTATGCATGCATGACCCAACGAGATCAAGATCCCGT
CACATCCTCGACACAGGAAGCAAGATGGGGCGGGTCCGGCGGTATAAGAA
GCTCAAGGCCTGTGATCCTTGTGCGCGCGGGCGGGGCTCAGCGCAGTGCG
AAGAGGATGCCAAGTATGATATGGCCCCGTCAGGGCTTGACTCGGACGAG
GAGAGATGTACGTACGGCAAGGGGACAGAAACAAGACAGCAGGAGAGAGG
AGGGAGGTATAGCAAGCCTATTAAGATTGATGAATTATTAGATATCGTAT
CTGATATTAGATGTATGGCTCCATTCTTCCTTTACACATTTTATGCATCC
GTATCACTTTTCACCTGTCATCAGTGCCAGCCATCAATCATGGAATCATG
GCCATGTTTGAGACATATTGTTCAACGCGCGTGTCACATTACGGCTATTC
GCTGCCTCTCCCGTCACTATCTCATCCTCCCCATTATCCGCATCAATCTG
TGTACCCCACAAATCCCCTTTCATCACACTCACCCACCCTCCCCTCCACA
ATACAAATACACAGTTGGCGGAACAGGCGGCGGCCAAAAAAGACGGCGAC
AAGAGCGACGATGGGCAAAAGATGCCTTAAGGGACAACGAATATATCGAG
GAGCTCGAGAGCCAAGCCTTGAAGAAGCGAAAGAAGCAACTGCCGCAGGC
CTCCATCCAACCCAAGCAGCCGAATGAGGTTTGTTGGTAGATATAACGGC
TTGATGACCATATCTCAAGTCACCGTAGAAATCCTCCAGCTTCTCTCTCT
TGTTCGTCTTGCTTACTTGCCCCTCCCCTCTTACATCCTTCCTACAGAGC
ATGAAGGCCTTCCAACACCGCGTCAGACAAGATCAAAAAGCGCTCCTCCG
CGAAAGCAATTTGGCAAACAGTACTACCAAGACCCGGCGTCGTGAGTACA
TGAAAAAGAAGAAGCAGGACAAGAAACGCAAGGCTCAGGGTCTGCCTGCT
CTCCCTGACCCTCGAGCAGAGGTCGAAGACAAGGAGGAGGAGGAGGAGCA
CGGGGAGCGTGCAAGTCAGCGCGCGTGGATGGGGCCGGTGCCATCGTTTG
CACGAGCAGAATCGATAACATTTGGGGAGAGGAACGATGCGCCGCCAAAT
TTGCGCTTACCTCGTTTGCCGTATGAGCGCAAGGCTCAAGCTCAATCCGT
CGCTGCGGCCGAAGCAAGGCAAAAACAGACTGGAAAGGAGAGAGTAGAGA
AGAGGGAGTTGAAGAGGTGGGTGACAGGCAGGAAGGAGGAGGGGCAAAGT
GCAGCGGCGGCGGCTGCGAGGACGAAGCAACCACCTGCGGAGAAGGCAAA
GTGGGCCCGGCTGAGAGAGGAGGCCCAGCAAGCCTACCGCACTATGAAGG
AAGGCAAGCAGGGTTCGGTCAAAACATAAAGAAAGACAAGATACACTCGA
TGCTTGAGT back to topCoding sequence (CDS) from alignment at chr18:455802..457610+ >NO18G01350.1 ID=NO18G01350.1|Name=NO18G01350.1|organism=Nannochloropsis oceanica|type=CDS|length=1191bp|location=Sequence derived from alignment at chr18:455802..457610+ (Nannochloropsis oceanica) ATGCAGGAAACACGGTCATATCATAAAGCATGTGGTTATAAAGAAACGAG GCCGTTGGTGACAGAACCCGATTCGGAAACAGAGGCCCGCTGGACACCAA GACTTTGTCTCTGGCAGTTGGGTCGGGGGAGGAGTTTCCCACGTTTCCTC GCGGGGGCAACGATCACGATTGAGCTTTTTCAAAATGCTTCGCTCCCCAT TTTTGCGCCAAAGCTCATTTCACAAAAGCTGTCATACTATGTGGCACTCT GCTTATGCATGCATGACCCAACGAGATCAAGATCCCGTCACATCCTCGAC ACAGGAAGCAAGATGGGGCGGGTCCGGCGGTATAAGAAGCTCAAGGCCTG TGATCCTTGTGCGCGCGGGCGGGGCTCAGCGCAGTGCGAAGAGGATGCCA AGTATGATATGGCCCCGTCAGGGCTTGACTCGGACGAGGAGAGATTTGGC GGAACAGGCGGCGGCCAAAAAAGACGGCGACAAGAGCGACGATGGGCAAA AGATGCCTTAAGGGACAACGAATATATCGAGGAGCTCGAGAGCCAAGCCT TGAAGAAGCGAAAGAAGCAACTGCCGCAGGCCTCCATCCAACCCAAGCAG CCGAATGAGAGCATGAAGGCCTTCCAACACCGCGTCAGACAAGATCAAAA AGCGCTCCTCCGCGAAAGCAATTTGGCAAACAGTACTACCAAGACCCGGC GTCGTGAGTACATGAAAAAGAAGAAGCAGGACAAGAAACGCAAGGCTCAG GGTCTGCCTGCTCTCCCTGACCCTCGAGCAGAGGTCGAAGACAAGGAGGA GGAGGAGGAGCACGGGGAGCGTGCAAGTCAGCGCGCGTGGATGGGGCCGG TGCCATCGTTTGCACGAGCAGAATCGATAACATTTGGGGAGAGGAACGAT GCGCCGCCAAATTTGCGCTTACCTCGTTTGCCGTATGAGCGCAAGGCTCA AGCTCAATCCGTCGCTGCGGCCGAAGCAAGGCAAAAACAGACTGGAAAGG AGAGAGTAGAGAAGAGGGAGTTGAAGAGGTGGGTGACAGGCAGGAAGGAG GAGGGGCAAAGTGCAGCGGCGGCGGCTGCGAGGACGAAGCAACCACCTGC GGAGAAGGCAAAGTGGGCCCGGCTGAGAGAGGAGGCCCAGCAAGCCTACC GCACTATGAAGGAAGGCAAGCAGGGTTCGGTCAAAACATAA back to top
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