NO18G01340, NO18G01340 (gene) Nannochloropsis oceanica

Overview
NameNO18G01340
Unique NameNO18G01340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1540
Alignment locationchr18:454179..455718 -

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Properties
Property NameValue
DescriptionTransmembrane adaptor Erv26
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:454179..455718 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007277Transmembrane_adaptor_Erv26
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO18G01340 vs. NCBI_GenBank
Match: EWM23359.1 (Transmembrane adaptor Erv26 [Nannochloropsis gaditana])

HSP 1 Score: 305.8 bits (782), Expect = 1.100e-79
Identity = 161/229 (70.31%), Postives = 183/229 (79.91%), Query Frame = 0
Query:    1 MGYVLVAIGYVAGYLAILFQAICIACGLYYAAELAEEYASATKRIIAYSVLAVVALHGLLLVESFPIFLLAGGIACHAVYGWLIIDFPNVEVFSLKFLFALGALCADHYIWFQYLQSRPPTIKSAFQSMAIFFLLVWFVPFALFVSLSVNDNVLPSIGSSATSGYSSTSSDAMYYSDYSTASGSLXXXXXXXXXXYSKGTSKNTTRKGGIRGMLDSLNSHIAPGIVKNV 230
            MGYVL A+GY+AGY+AILFQ ICIACGLYYAAELAEEYASATKR+I +S+ AVV +H LL  ESFP+ +L GGIACH  Y WL++DFP VE+FS KFL  L ALCADHYIWFQYL  RP  + SA  S+AIFFLLVWFVPFA+FVSLSVNDNVLPS+ SS    YSS+SSDAMYYSDYS    S           YSKGTS+NT++KGGIRGMLD+LN+HIAPGI KNV
Sbjct:    1 MGYVLAAVGYIAGYMAILFQTICIACGLYYAAELAEEYASATKRMIMWSISAVVGVHVLLYFESFPLLVLLGGIACHGAYAWLLMDFPKVEIFSYKFLLGLVALCADHYIWFQYLHGRPSIVPSALTSIAIFFLLVWFVPFAIFVSLSVNDNVLPSMTSSPQ--YSSSSSDAMYYSDYS----STRSLSMSDSGSYSKGTSRNTSKKGGIRGMLDTLNAHIAPGIAKNV 223          
BLAST of NO18G01340 vs. NCBI_GenBank
Match: XP_005855982.1 (hypothetical protein NGA_0524700 [Nannochloropsis gaditana CCMP526] >EKU20391.1 hypothetical protein NGA_0524700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 183.7 bits (465), Expect = 6.300e-43
Identity = 90/129 (69.77%), Postives = 104/129 (80.62%), Query Frame = 0
Query:    1 MGYVLVAIGYVAGYLAILFQAICIACGLYYAAELAEEYASATKRIIAYSVLAVVALHGLLLVESFPIFLLAGGIACHAVYGWLIIDFPNVEVFSLKFLFALGALCADHYIWFQYLQSRPPTIKSAFQSM 130
            MGYVL A+GY+AGY+AILFQ ICIACGLYYAAELAEEYASATKR+I +S+ AVV +H LL  ESFP+ +L GGIACH  Y WL++DFP VE+FS KFL  L ALCADHYIWFQYL  RP  + SA  S+
Sbjct:    1 MGYVLAAVGYIAGYMAILFQTICIACGLYYAAELAEEYASATKRMIMWSISAVVGVHVLLYFESFPLLVLLGGIACHGAYTWLLMDFPKVEIFSYKFLLGLVALCADHYIWFQYLHGRPSIVPSALTSI 129          
BLAST of NO18G01340 vs. NCBI_GenBank
Match: XP_009032872.1 (hypothetical protein AURANDRAFT_6594, partial [Aureococcus anophagefferens] >EGB11794.1 hypothetical protein AURANDRAFT_6594, partial [Aureococcus anophagefferens])

HSP 1 Score: 137.9 bits (346), Expect = 4.000e-29
Identity = 67/145 (46.21%), Postives = 95/145 (65.52%), Query Frame = 0
Query:   11 VAGYLAILFQAICIACGLYYAAELAEEYASATKRIIAYSVLAVVALHGLLLVESFPIFLLAGGIACHAVYGWLIIDFPNVEVFSLKFLFALGALCADHYIWFQYLQSRPPTIKSAFQSMAIFFLLVWFVPFALFVSLSVNDNVLP 156
            + GYLA+    +C++CGLYYAAELAEE++  T R++ Y+  AVVA H +L ++ +P+  +A G+ACHA Y WL+ D+P +E+ S  FL ++ A    HY WFQ+L            S+  F L VW VPF+LF+SLS+NDN LP
Sbjct:    4 LGGYLAVFGATLCLSCGLYYAAELAEEHSVLTGRLLGYATRAVVAAHAVLWLDGYPLRRVAAGVACHACYAWLLNDYPRLELSSPAFLASVAAFLGGHYSWFQHLADLSVEPLPFINSLGFFTLFVWLVPFSLFISLSINDNALP 148          
BLAST of NO18G01340 vs. NCBI_GenBank
Match: XP_005835276.1 (hypothetical protein GUITHDRAFT_86075 [Guillardia theta CCMP2712] >EKX48296.1 hypothetical protein GUITHDRAFT_86075 [Guillardia theta CCMP2712])

HSP 1 Score: 126.3 bits (316), Expect = 1.200e-25
Identity = 78/160 (48.75%), Postives = 95/160 (59.38%), Query Frame = 0
Query:   10 YVAGYLAILFQAICIACGLYYAAELAEEYASATKRIIAYSVLAVVALHGLLLV-ESFPIFLLAGGIACHAVYGWLIIDFPNVEVFSLKFLFALGALCADHYIWFQYL----QSRPPTIKSAFQSMAIFFLLVWFVPFALFVSLSVNDNVLPSIGSSATSG 165
            Y +GYL +LF AIC+ACGLYY AELAEEY+  TK+++ YS+  V+A+HGLLLV + FP F    GIA H VY   + DFP V   S  FL A   L  +H++W  Y     Q R P      Q MA F   VW VPF  FVS+S+ D VLPS   S   G
Sbjct:    8 YASGYLVLLFLAICMACGLYYMAELAEEYSRLTKKVLKYSIWVVLAIHGLLLVLDGFPFFTTMFGIALHVVYYQFLKDFPFVNFSSPLFLGACAGLLVNHWLWIVYFREQYQYRVP------QIMAFFVPCVWLVPFGFFVSVSLGDTVLPSATHSGGLG 161          
BLAST of NO18G01340 vs. NCBI_GenBank
Match: XP_022839820.1 (Transmembrane adaptor Erv26 [Ostreococcus tauri] >CEF99403.1 Transmembrane adaptor Erv26 [Ostreococcus tauri])

HSP 1 Score: 114.8 bits (286), Expect = 3.600e-22
Identity = 64/156 (41.03%), Postives = 95/156 (60.90%), Query Frame = 0
Query:    1 MGYVLVAIGYVAGYLAILFQAICIACGLYYAAELAEEYASATKRIIAYSVLAVVALHGLLLV-ESFPIFLLAGGIACHAVYGWLIIDFPNVEVFSLKFLFALGALCADHYIWFQYLQSRPPTIKSAFQSMAIFFLLVWFVPFALFVSLSVNDNVLP 156
            M +V  A+ Y+ GYL ++F A+C+A GLYY AE+ EEY   TKR++ YS+ A   LH LLLV +  P F LA        Y  ++  FP ++  S++FL +L AL A H++W ++      T  S    +  FF++VWFVPF  F+S++ N++VLP
Sbjct:    1 MEFVSDALVYIGGYLFLVFVAVCLATGLYYLAEMVEEYTRLTKRVLDYSIKASYGLHALLLVFDRLPFFTLAISAGSQFAYSRMLRRFPFIDFTSVEFLGSLAALAASHWVWVRHFHG---TYHSTEYVLGFFFMIVWFVPFGFFISIAANESVLP 153          
BLAST of NO18G01340 vs. NCBI_GenBank
Match: OAQ28798.1 (DUF396-domain-containing protein [Mortierella elongata AG-77])

HSP 1 Score: 113.2 bits (282), Expect = 1.100e-21
Identity = 66/157 (42.04%), Postives = 95/157 (60.51%), Query Frame = 0
Query:    2 GYVLVAIGYVAGYLAILFQAICIACGLYYAAELAEEYASATKRIIAYSVLAVVALHGLL-LVESFPIFLLAGGIACHAVYGWLIIDFPNVEVFSLKFLFALGALCADHYIWFQYLQSRPPTIKSAFQSMAIFF-LLVWFVPFALFVSLSVNDNVLPS 157
            G  L+ I Y+   +A +F  + +ACGLYY AEL EEY   TK+II    L VV LH +L +V+  P   +   +ACHAVY   + +FP + + S+ FL ++  +  DH++WF+Y  ++      +F S+A FF + VW VPF  F+SLS NDN LPS
Sbjct:    4 GVTLLLISYIGTAIAFVFATLSLACGLYYLAELVEEYTVLTKKIIKGLTLGVVGLHLMLWIVDGLPFTKILFSLACHAVYSTNLSNFPYISLVSIPFLSSVVLVLVDHFMWFKYFANK----YYSFMSIASFFGICVWLVPFTYFISLSANDNALPS 156          
BLAST of NO18G01340 vs. NCBI_GenBank
Match: XP_021878568.1 (transmembrane adaptor Erv26-domain-containing protein [Lobosporangium transversale] >ORZ08785.1 transmembrane adaptor Erv26-domain-containing protein [Lobosporangium transversale])

HSP 1 Score: 113.2 bits (282), Expect = 1.100e-21
Identity = 68/161 (42.24%), Postives = 91/161 (56.52%), Query Frame = 0
Query:    2 GYVLVAIGYVAGYLAILFQAICIACGLYYAAELAEEYASATKRIIAYSVLAVVALH-GLLLVESFPIFLLAGGIACHAVYGWLIIDFPNVEVFSLKFLFALGALCADHYIWFQYLQSRPPTIKSAFQSMAIFF-LLVWFVPFALFVSLSVNDNVLPSIGSS 161
            G+    I +    LA LF  + +ACGLYY AEL EEY   TK+II    + VV LH  L L++  P   +   + CHAVY + + +FP + + S+ FL +   +  DH++WFQY      T    F S+A FF + VW VPFA F+SLS NDN LPS   S
Sbjct:    4 GFTFTLISFAGAVLAFLFTTLSLACGLYYMAELVEEYTVWTKKIIKGLTMVVVVLHISLWLLDGLPFTKILFSLGCHAVYSFNLTNFPFISLTSVPFLLSCVLVLVDHFMWFQYFSRHYHT----FASIASFFGICVWMVPFAYFISLSANDNALPSFDKS 160          
BLAST of NO18G01340 vs. NCBI_GenBank
Match: EXX52911.1 (Svp26p [Rhizophagus irregularis DAOM 197198w] >GBC41037.1 transmembrane adaptor erv26-like protein [Rhizophagus irregularis DAOM 181602] >PKC18033.1 transmembrane adaptor Erv26 [Rhizophagus irregularis] >PKC71938.1 transmembrane adaptor Erv26 [Rhizophagus irregularis] >PKY15453.1 transmembrane adaptor Erv26 [Rhizophagus irregularis] >PKY42556.1 transmembrane adaptor Erv26 [Rhizophagus irregularis] >POG63532.1 hypothetical protein GLOIN_2v1685259 [Rhizophagus irregularis DAOM 181602=DAOM 197198])

HSP 1 Score: 112.1 bits (279), Expect = 2.300e-21
Identity = 69/155 (44.52%), Postives = 92/155 (59.35%), Query Frame = 0
Query:    4 VLVAIGYVAGYLAILFQAICIACGLYYAAELAEEYASATKRIIAYSVLAVVALHGLL-LVESFPIFLLAGGIACHAVYGWLIIDFPNVEVFSLKFLFALGALCADHYIWFQYLQSRPPTIKSAFQSMAIFF-LLVWFVPFALFVSLSVNDNVLPS 157
            +L  + Y A  LA LF  + +ACGLYY AEL EEY   T++II    L VV +H LL L +SFP + +   I CH VY   +  FP + + SL F+ +   + ADH++WFQY  SR       F  +A FF + VW +PF+ F+SLS NDN LPS
Sbjct:    3 LLHLLSYGAAVLAFLFLTLSLACGLYYLAELVEEYTVLTRKIIKNVTLMVVVIHVLLWLFDSFPFWRILFSIMCHGVYTMNLETFPFINLTSLPFIASCVLVIADHFLWFQYFTSR----YFVFVDVAAFFGICVWLIPFSYFISLSANDNALPS 153          
BLAST of NO18G01340 vs. NCBI_GenBank
Match: GAQ92289.1 (hypothetical protein KFL_009680010 [Klebsormidium nitens])

HSP 1 Score: 111.3 bits (277), Expect = 4.000e-21
Identity = 69/183 (37.70%), Postives = 104/183 (56.83%), Query Frame = 0
Query:    8 IGYVAGYLAILFQAICIACGLYYAAELAEEYASATKRIIAYSVLAVVALH-GLLLVESFPIFLLAGGIACHAVYGWLIIDFPNVEVFSLKFLFALGALCADHYIWFQYL--QSRPPTIKSAFQSMAIFFLLVWFVPFALFVSLSVNDNVLPSIGSSATS--GYSSTSSDAMYYSDYSTASGSL 186
            I YV GYL ++F A+C+A GLYY AEL EEY   TKR+I  ++  V+ +H  LLL +  P+  +A GI  H VY  L+  FP + + S  FL ++G +   H +WF++     + P +   +  +  F ++VW +PFA F+SL+ N++VLP  G    S  GY+   SD  Y      + G+L
Sbjct:    8 IVYVGGYLFLVFFAVCLATGLYYIAELVEEYTRLTKRVIGTAIKVVIGIHVALLLWDRLPVLPIAVGIGSHVVYYRLLKTFPYISLTSPDFLGSVGLVVLSHIVWFRFFAYDYQRPYLTLEY-VIGFFLIMVWLIPFAYFISLAANESVLPGAGGPGASYGGYTRQESDPTYMGGGKRSRGTL 189          
BLAST of NO18G01340 vs. NCBI_GenBank
Match: KFH73033.1 (hypothetical protein MVEG_00258 [Mortierella verticillata NRRL 6337])

HSP 1 Score: 110.9 bits (276), Expect = 5.200e-21
Identity = 68/161 (42.24%), Postives = 91/161 (56.52%), Query Frame = 0
Query:    5 LVAIGYVAGYLAILFQAICIACGLYYAAELAEEYASATKRIIAYSVLAVVALH-GLLLVESFPIFLLAGGIACHAVYGWLIIDFPNVEVFSLKFLFALGALCADHYIWFQYLQSRPPTIKSAFQSMAIFF-LLVWFVPFALFVSLSVNDNVLPSIGSSATS 164
            L  I Y    +A LF  + +ACGLYY AEL EEY   TK+II    +AV  LH  L L++ FP   +   + CHAVY   +  FP + + SL FL +   +  DH++WFQ+   R      +F S+A FF + VW +PFA F+SLS NDN LPS   +  S
Sbjct:    7 LTLISYAGTGIAFLFSTLSLACGLYYLAELVEEYTVLTKKIIKGLTVAVAVLHLALWLLDGFPFSKILFSLFCHAVYSLNLGKFPYISLLSLPFLASCALVLCDHFMWFQFFTRR----YYSFMSIASFFGICVWMIPFAYFISLSANDNALPSFDKTEQS 163          
The following BLAST results are available for this feature:
BLAST of NO18G01340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23359.11.100e-7970.31Transmembrane adaptor Erv26 [Nannochloropsis gadit... [more]
XP_005855982.16.300e-4369.77hypothetical protein NGA_0524700 [Nannochloropsis ... [more]
XP_009032872.14.000e-2946.21hypothetical protein AURANDRAFT_6594, partial [Aur... [more]
XP_005835276.11.200e-2548.75hypothetical protein GUITHDRAFT_86075 [Guillardia ... [more]
XP_022839820.13.600e-2241.03Transmembrane adaptor Erv26 [Ostreococcus tauri] >... [more]
OAQ28798.11.100e-2142.04DUF396-domain-containing protein [Mortierella elon... [more]
XP_021878568.11.100e-2142.24transmembrane adaptor Erv26-domain-containing prot... [more]
EXX52911.12.300e-2144.52Svp26p [Rhizophagus irregularis DAOM 197198w] >GBC... [more]
GAQ92289.14.000e-2137.70hypothetical protein KFL_009680010 [Klebsormidium ... [more]
KFH73033.15.200e-2142.24hypothetical protein MVEG_00258 [Mortierella verti... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR060ncniR060Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003990NSK003990Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01340.1NO18G01340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607977gene_9063Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100057g5gene7107Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01340.1NO18G01340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01340 ID=NO18G01340|Name=NO18G01340|organism=Nannochloropsis oceanica|type=gene|length=1540bp
ATGGGTTACGTCCTTGTCGCCATTGGGTATGTCGCAGGCTACCTGGCCAT
CCTTTTTCAAGCCATTTGTATTGgtacgtagagcttcaagtgggctcctc
cttgttctatctttaaagggttagtgggttgtaccgccagcgaaattcag
agggtgtgggcaagtatggcaaacaggcgttagactactacgcacacctg
ctactcaagacactagtttggctctaaatgttaagtggttcggcaagcca
gattctaaagcgtgagctaaagcatcgacagggcctaaatcgccgctgac
atctcgccacgcccaagctcaggtgcgaaacacacatagacgtgcaaacc
tcactcacgtactatacacgcacataaacacaatatacaccagCATGTGG
GTTGTACTACGCCGCTGAGCTGGCCGAGGAGTACGCGTCTGCCACCAAGC
GTATCATCGCCTACTCCGTCCTTGCCGTCGTCGCCCTGCACGGCCTCCTA
CTTGTGGAGTCTTTCCCCATCTTCCTTCTGGCCGGCGGTATTGCCTGTCA
TGCCGTTTATGGCTGGCTGATTATAGACTTCCCCAACGTGGAGGTTTTTA
GCCTTAAGTTTTTGTTCGCCCTGGGCGCCCTGTGCGCTGACCACTACATT
TGGTTCCAGTACCTTCAAAGCCGCCCCCCCACCATCAAGAGCGCTTTCCA
GAGTATGgtgcgtttgatagtcaagggtgactgggatgggatggatgcag
gggaaaatgggtctgtttgagacgtttgcgatgaaagaggggctggcttc
tgaagggggggttacagtgctggcatccgtggcggtgataccgagagtaa
ggaatcagatttctcactttcgtgtttcacaagcttctacttttctcgtg
tgtcgctttgatctcctgtgcgggacgagcgaggaatgaatggagggtcg
gacatttggatacgagaggctgcatcgagttagggtgggaggaggcatat
gcttaccctcctccaaaggacatgtgacctggcactcatccatctccaca
ttttctaatgtcatatttctagGCAATCTTTTTCCTCCTCGTCTGGTTCG
TGCCGTTTGCGCTCTTTGTCTCCCTCTCAGTAAATGACAACGTCCTGCCT
TCCATAGGCTCTTCTGCGACTTCCGGCTACTCAAGCACCTCCAGTGgtac
gtgtcatcttaccatttttttctatcatttgaaaaaaacttcttgtaatg
agctttcgaggagacaaagctgctgcaaacaatccacgctccgttttctt
ttttatggtcaatcattcacgcatatgcaaacatacaatgccacccaacg
acccatcgcagATGCCATGTATTACTCGGACTATTCTACCGCCTCTGGAT
CCCTCTCTATGTCAGGCTCTGGTTCCTCCCTCTCCTACAGCAAGGGCACC
AGCAAGAACACTACCAGAAAGGGCGGCATCCGAGGCATGCTCGACTCGCT
CAACTCCCACATTGCCCCTGGCATTGTCAAAAATGTTTAG
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protein sequence of NO18G01340.1

>NO18G01340.1-protein ID=NO18G01340.1-protein|Name=NO18G01340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=230bp
MGYVLVAIGYVAGYLAILFQAICIACGLYYAAELAEEYASATKRIIAYSV
LAVVALHGLLLVESFPIFLLAGGIACHAVYGWLIIDFPNVEVFSLKFLFA
LGALCADHYIWFQYLQSRPPTIKSAFQSMAIFFLLVWFVPFALFVSLSVN
DNVLPSIGSSATSGYSSTSSDAMYYSDYSTASGSLSMSGSGSSLSYSKGT
SKNTTRKGGIRGMLDSLNSHIAPGIVKNV*
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Synonyms
Publications