NO18G01280, NO18G01280 (gene) Nannochloropsis oceanica

Overview
NameNO18G01280
Unique NameNO18G01280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1797
Alignment locationchr18:436559..438355 -

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Properties
Property NameValue
Descriptionheat shock protein 17.6A
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:436559..438355 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008978HSP20-like_chaperone
IPR002068A-crystallin/Hsp20_dom
Homology
BLAST of NO18G01280 vs. NCBI_GenBank
Match: XP_010912721.1 (PREDICTED: 22.7 kDa class IV heat shock protein-like [Elaeis guineensis])

HSP 1 Score: 70.1 bits (170), Expect = 1.100e-8
Identity = 49/144 (34.03%), Postives = 64/144 (44.44%), Query Frame = 0
Query:  101 AIGIITTFCADAIETQNTYIISADLPGVKRDDIRIAFLQEGVLSITAERQSLYEVTSKATENGGAGDIGKARRSPGWTNQQQEIDVSKEAADAFPKFLMREVTYGKTTRSFKLPPDADIDSTTAGFENGVLIVTMKKREVPKEK 245
            A+  +   CAD  ET   ++IS D+PGVKR+DI+I      VL IT ER+S  EV  +                                     K+   E T GK  R F+LP  AD+DS  A  ENGVL VT+ K    K++
Sbjct:   61 AVDALALACADWKETPQAHVISLDVPGVKREDIKIEVEDNRVLRITGERKSEEEVEGE-------------------------------------KWHRAERTAGKFWRQFRLPASADMDSIKAHLENGVLTVTVPKLAEEKKR 167          
BLAST of NO18G01280 vs. NCBI_GenBank
Match: ORY46173.1 (HSP20-like chaperone [Neocallimastix californiae])

HSP 1 Score: 68.9 bits (167), Expect = 2.500e-8
Identity = 48/162 (29.63%), Postives = 79/162 (48.77%), Query Frame = 0
Query:   83 LWRKVIQHQTTDMTQQNPAIGIITTFCADAIETQNTYIISADLPGVKRDDIRIAFLQEGVLSITAERQSLYEVTSKATENGGAGDIGKARRSPGWTNQQQEIDVSKEAADAFPKFLMREVTYGKTTRSFKLPPDADIDSTTAGFENGVLIVTMKKREVPKEK 245
            L R +  ++  D+ + +P I I         E +  Y I ADLPG+ +D ++I    E +L+I+ ER+S++                  ++     N + +  +S E  +   K+ + E  YGK +RSF++P DADI++  A  ENGVL V   K E  K +
Sbjct:   62 LSRALRNNELFDIVKFSPKINI--------SEDEKNYYIHADLPGMTKDQVKIELNDEHILTISGERKSIF------------------KKKESNENIKSKETISLEENNKV-KYNIMESNYGKFSRSFRIPEDADIENIHAKMENGVLEVVFNKIEPQKHQ 196          
BLAST of NO18G01280 vs. NCBI_GenBank
Match: ORY74014.1 (HSP20-like chaperone [Neocallimastix californiae])

HSP 1 Score: 68.6 bits (166), Expect = 3.200e-8
Identity = 42/132 (31.82%), Postives = 65/132 (49.24%), Query Frame = 0
Query:  114 ETQNTYIISADLPGVKRDDIRIAFLQEG-VLSITAERQSLYEVTSKATENGGAGDIGKARRSPGWTNQQQEIDVSKEAADAFPKFLMREVTYGKTTRSFKLPPDADIDSTTAGFENGVLIVTMKKREVPKEK 245
            E +N Y I ADLPG+K+D +++    E  VL+I+ ER+++ + + KA++                                       E +YGK +RSF +P +ADI++  A  ENGVL VT+KK E  K +
Sbjct:   86 EDENNYYIHADLPGMKKDQVKMELSDEDRVLTISGERETIIDDSDKASKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRIECSYGKFSRSFSIPENADINNIQAKMENGVLEVTLKKMEPQKNE 217          
BLAST of NO18G01280 vs. NCBI_GenBank
Match: BAS04462.1 (HSP20-like chaperones superfamily protein [Marchantia polymorpha] >OAE29559.1 hypothetical protein AXG93_702s1120 [Marchantia polymorpha subsp. ruderalis] >PTQ34757.1 hypothetical protein MARPO_0076s0004 [Marchantia polymorpha])

HSP 1 Score: 68.2 bits (165), Expect = 4.200e-8
Identity = 44/134 (32.84%), Postives = 60/134 (44.78%), Query Frame = 0
Query:  111 DAIETQNTYIISADLPGVKRDDIRIAFLQEGVLSITAERQSLYEVTSKATENGGAGDIGKARRSPGWTNQQQEIDVSKEAADAFPKFLMREVTYGKTTRSFKLPPDADIDSTTAGFENGVLIVTMKKREVPKEK 245
            D +ET   ++  ADLPG+K+D+I+I    +GVLSI+ ER                                     SKE  D    +   E ++GK  R FKLP +A     +A  ENGVL VT+ K E  K+K
Sbjct:   53 DWVETPEAHVFKADLPGMKKDEIKIQVADDGVLSISGER-------------------------------------SKEKVDEKDNYRRSERSFGKFFRQFKLPANAKAQEISAKVENGVLTVTVPKTEESKKK 149          
BLAST of NO18G01280 vs. NCBI_GenBank
Match: BAS04463.1 (HSP20-like chaperones superfamily protein [Marchantia polymorpha] >OAE29560.1 hypothetical protein AXG93_702s1130 [Marchantia polymorpha subsp. ruderalis] >PTQ34758.1 hypothetical protein MARPO_0076s0005 [Marchantia polymorpha])

HSP 1 Score: 68.2 bits (165), Expect = 4.200e-8
Identity = 44/134 (32.84%), Postives = 60/134 (44.78%), Query Frame = 0
Query:  111 DAIETQNTYIISADLPGVKRDDIRIAFLQEGVLSITAERQSLYEVTSKATENGGAGDIGKARRSPGWTNQQQEIDVSKEAADAFPKFLMREVTYGKTTRSFKLPPDADIDSTTAGFENGVLIVTMKKREVPKEK 245
            D +ET   ++  ADLPG+K+D+I+I    +GVLSI+ ER                                     SKE  D    +   E ++GK  R FKLP +A     +A  ENGVL VT+ K E  K+K
Sbjct:   53 DWVETPEAHVFKADLPGMKKDEIKIQVADDGVLSISGER-------------------------------------SKEKVDEEDNYRRSERSFGKFFRQFKLPANAKAQEISAKVENGVLTVTVPKTEESKKK 149          
BLAST of NO18G01280 vs. NCBI_GenBank
Match: BAS04464.1 (HSP20-like chaperones superfamily protein [Marchantia polymorpha] >PTQ34759.1 hypothetical protein MARPO_0076s0006 [Marchantia polymorpha])

HSP 1 Score: 68.2 bits (165), Expect = 4.200e-8
Identity = 44/134 (32.84%), Postives = 60/134 (44.78%), Query Frame = 0
Query:  111 DAIETQNTYIISADLPGVKRDDIRIAFLQEGVLSITAERQSLYEVTSKATENGGAGDIGKARRSPGWTNQQQEIDVSKEAADAFPKFLMREVTYGKTTRSFKLPPDADIDSTTAGFENGVLIVTMKKREVPKEK 245
            D +ET   ++  ADLPG+K+D+I+I    +GVLSI+ ER                                     SKE  D    +   E ++GK  R FKLP +A     +A  ENGVL VT+ K E  K+K
Sbjct:   53 DWVETPEAHVFKADLPGMKKDEIKIQVADDGVLSISGER-------------------------------------SKEKVDEKDNYRRSERSFGKFFRQFKLPANAKAQEISAKVENGVLTVTVPKTEESKKK 149          
BLAST of NO18G01280 vs. NCBI_GenBank
Match: ORY75258.1 (HSP20-like chaperone, partial [Neocallimastix californiae])

HSP 1 Score: 67.8 bits (164), Expect = 5.500e-8
Identity = 41/142 (28.87%), Postives = 67/142 (47.18%), Query Frame = 0
Query:  114 ETQNTYIISADLPGVKRDDIRIAFLQEGVLSITAERQSLYEVTSKATEN-----------GGAGDIGKARRSPGWTNQQQEIDVSKEAADAFPKFLMREVTYGKTTRSFKLPPDADIDSTTAGFENGVLIVTMKKREVPKEK 245
            E +N Y I ADLPG+K+D +++   ++ +L+I+ ER+S+Y+     +EN                                            K+ + E +YGK +RSF +P DA++++  A  ENGVL V + K E PK +
Sbjct:   18 EDENNYYIHADLPGMKKDQVKMEINEDRILTISGERKSIYDNYQNKSENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKYSIIESSYGKFSRSFNIPEDANLENIQAKMENGVLEVIINKIEPPKNQ 159          
BLAST of NO18G01280 vs. NCBI_GenBank
Match: BAS04465.1 (HSP20-like chaperones superfamily protein [Marchantia polymorpha] >PTQ34760.1 hypothetical protein MARPO_0076s0007 [Marchantia polymorpha])

HSP 1 Score: 67.4 bits (163), Expect = 7.200e-8
Identity = 44/134 (32.84%), Postives = 60/134 (44.78%), Query Frame = 0
Query:  111 DAIETQNTYIISADLPGVKRDDIRIAFLQEGVLSITAERQSLYEVTSKATENGGAGDIGKARRSPGWTNQQQEIDVSKEAADAFPKFLMREVTYGKTTRSFKLPPDADIDSTTAGFENGVLIVTMKKREVPKEK 245
            D +ET   ++  ADLPG+K+++I+I    +GVLSI+ ER                                     SKE  D    +   E ++GK  R FKLP +A     TA  ENGVL VT+ K E  K+K
Sbjct:   53 DWVETPEAHVFKADLPGMKKEEIKIQVADDGVLSISGER-------------------------------------SKEKVDEKDNYRRSERSFGKFFRQFKLPANAKAREITAKVENGVLTVTVPKTEESKKK 149          
BLAST of NO18G01280 vs. NCBI_GenBank
Match: ORY23505.1 (HSP20-like chaperone, partial [Neocallimastix californiae])

HSP 1 Score: 67.4 bits (163), Expect = 7.200e-8
Identity = 42/136 (30.88%), Postives = 63/136 (46.32%), Query Frame = 0
Query:  114 ETQNTYIISADLPGVKRDDIRIAFLQEGVLSITAERQSLYEVTSKATENGGAGDIGKARRSPGWTNQQQEIDVSKEAADAFPKFLMREVTYGKTTRSFKLPPDADIDSTTAGFENGVLIVTMKKREVPKEKLVMIK 250
            E +N Y I ADLPG+K+D +++    +   +I+ ER+S  +          + D                             F M E +YGK  RSF +P DAD+++  A  ENGVL V+ KK E PK +  +I+
Sbjct:   40 EDENNYYIHADLPGMKKDQVKMEISDDRTFTISGERESFKD----------SDDKEXXXXXXXXXXXXXXXXXXXXXXXXXXXFHMMECSYGKFERSFSIPEDADLNNIQAKMENGVLEVSFKKMEPPKSQKRIIQ 165          
BLAST of NO18G01280 vs. NCBI_GenBank
Match: XP_001749677.1 (hypothetical protein [Monosiga brevicollis MX1] >EDQ85486.1 predicted protein [Monosiga brevicollis MX1])

HSP 1 Score: 67.0 bits (162), Expect = 9.400e-8
Identity = 42/142 (29.58%), Postives = 66/142 (46.48%), Query Frame = 0
Query:  111 DAIETQNTYIISADLPGVKRDDIRIAFLQEGVLSITAERQSLYEVTSKATE--------NGGAGDIGKARRSPGWTNQQQEIDVSKEAADAFPKFLMREVTYGKTTRSFKLPPDADIDSTTAGFENGVLIVTMKKREVPKEK 245
            D  E  + Y +  D PG+  +DI I    +  L+++ +R    E    A            GAGD+      P    ++   D  K+A  A P++   E ++G   R+F LP DA++D+ TA   NG L+VT+ K   P+ K
Sbjct:   72 DVREEADHYSLHIDTPGMSEEDISIELTGDHALAVSGKRSRRVETKGPALPATTKTDAITDGAGDVMDTDAEP--VPRKPAADQQKDATVAAPRWHRVERSFGSFQRTFNLPEDANVDNITASMHNGELVVTVPKLPTPQPK 211          
The following BLAST results are available for this feature:
BLAST of NO18G01280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_010912721.11.100e-834.03PREDICTED: 22.7 kDa class IV heat shock protein-li... [more]
ORY46173.12.500e-829.63HSP20-like chaperone [Neocallimastix californiae][more]
ORY74014.13.200e-831.82HSP20-like chaperone [Neocallimastix californiae][more]
BAS04462.14.200e-832.84HSP20-like chaperones superfamily protein [Marchan... [more]
BAS04463.14.200e-832.84HSP20-like chaperones superfamily protein [Marchan... [more]
BAS04464.14.200e-832.84HSP20-like chaperones superfamily protein [Marchan... [more]
ORY75258.15.500e-828.87HSP20-like chaperone, partial [Neocallimastix cali... [more]
BAS04465.17.200e-832.84HSP20-like chaperones superfamily protein [Marchan... [more]
ORY23505.17.200e-830.88HSP20-like chaperone, partial [Neocallimastix cali... [more]
XP_001749677.19.400e-829.58hypothetical protein [Monosiga brevicollis MX1] >E... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR060ncniR060Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01280.1NO18G01280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607932gene_9054Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01280.1NO18G01280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01280 ID=NO18G01280|Name=NO18G01280|organism=Nannochloropsis oceanica|type=gene|length=1797bp
AAGTTGAAGGAAGAACAAAACTGCGAAATACGTGCCTGGAGAAGGATGAG
AGTCCTCGCTCTGCCTTCGAAGTACGAAAACCTTTCTGATTGGCTGAGTT
GACCAGCCAGGGATGCGTGTGTCTCTATTTTTGGTGTCCTTATTTGGATG
TGCCCTGCTTGTTTGCATCATTTTTTGCATACAATCTTCATTCCTTTTGC
TCTATTGCGTGGTCCAGAACACGCGCCCTCATTCCGACATTCTACCGCAT
CAATGCGGCTGCTGCTTATCCTCCCTTTCTCGTGCCGCACGGTTGCCTGG
ATATTTCAACATTGTACGAGGGGAGCGTAGTCCTTCCTTAACTCACATTA
GCTCCTTTCCCATCGTCAAGCTATCAATTGCACAAAGACACAAGCAATAA
CGTACAGCAGCTACATGAAGTTGAGTAGCACCACAGGCGCCAGCATCATC
GGTATCACCTCTCCGGCGCGCATTCTTACCCTTACATCTCTGGGCCTCTG
GCTTTTAAGCTTTGGTCCTCCGAATGCTCAGGGTCACATGATGATGGTTG
CCTCACCCTTTAATGGGCTTGGCCGAGGCGACAGgtaagccactcttttc
ccaccttgcgctagaggataccgattaccccgctgcctcccgtcatccaa
atatcttcaccttgagcacagaatagggcttctaatagtctagtctctca
acaaatagGGCTCTCGGACGCTTCACACGTATGGTGGACGAGCTAGTGAA
CGAGCAAAACCTCCTGCCACAGACCGTACTTCCTCTTTGGCGGAAGGTGA
TACAGCATCAGACGACTGACATGACCCAGCAAAATCCCGCCATTGGCATC
ATTACGACCTTCTGCGCCGATGCAATTGAGgtacgacacgtgatcaagcc
agaacaggaagaacattatagtcagacagcgataatttcataatttcaaa
cagaaagtagggaaggaattggtgttgggaaagctgttggtggaatgaaa
aaacaatgattttcaggctggtgggcaggcagggcagcatagaatttgga
ttagtaacgcagaaaagggtttagggagaaggaggatggggatgggaaaa
gaatgtacaatcaatttgtcagtgtcgatcagggaggtacaagggtaaaa
ataaaacaggatgtgtcacgaatcaatccatatctattccagtaatgcta
acaaaacccgaccccattcccatccatttttcaaacctcttcactgtaca
cagACTCAAAATACCTACATCATTTCCGCCGATCTACCAGGGGTCAAGCG
AGATGATATTCGGATTGCCTTCCTTCAGGAGGGCGTCCTGTCTATCACAG
CTGAGCGCCAGAGCTTATACGAGGTAACTTCCAAGGCGACAGAGAATGGA
GGGGCCGGGGATATAGGGAAGGCACGGCGGTCTCCGGGCTGGACGAATCA
GCAGCAAGAAATTGACGTGTCGAAGGAAGCTGCGGATGCCTTTCCCAAGT
TTTTAATGCGCGAGGTGACGTACGGCAAAACAACGCGCTCATTCAAACTG
CCGCCGGATGCCGACATTGACTCAACCACAGCAGGGTTTGAGAACGGAGT
GCTGATTGTTACAATGAAAAAGCGCGAGGTACCGAAAGAAAAGCTGGTCA
TGATCAAATGATCGAGAGAAAAAGCCAAGATGTTCCCATGACAAATGAAA
GGAGATGGTCAATGGTCCGATCATAATGGTTTCATTAACCGTTTCGTTAC
CAGAGCATGAAAAGGAAAGAAAAAAGAAAGCGCGACGTATGGATTGG
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protein sequence of NO18G01280.1

>NO18G01280.1-protein ID=NO18G01280.1-protein|Name=NO18G01280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=250bp
MKLSSTTGASIIGITSPARILTLTSLGLWLLSFGPPNAQGHMMMVASPFN
GLGRGDRALGRFTRMVDELVNEQNLLPQTVLPLWRKVIQHQTTDMTQQNP
AIGIITTFCADAIETQNTYIISADLPGVKRDDIRIAFLQEGVLSITAERQ
SLYEVTSKATENGGAGDIGKARRSPGWTNQQQEIDVSKEAADAFPKFLMR
EVTYGKTTRSFKLPPDADIDSTTAGFENGVLIVTMKKREVPKEKLVMIK*
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Synonyms
Publications