NO18G01260, NO18G01260 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO18G01260 vs. NCBI_GenBank
Match: XP_005855971.1 (tpr repeat-containing protein [Nannochloropsis gaditana CCMP526] >EKU20380.1 tpr repeat-containing protein [Nannochloropsis gaditana CCMP526] >EWM23341.1 tetratricopeptide tpr_1 repeat-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 506.9 bits (1304), Expect = 5.800e-140 Identity = 253/340 (74.41%), Postives = 292/340 (85.88%), Query Frame = 0 Query: 75 NRKGALRRYVRVTLGLTAGASWTGLTVGNAGAALPSA-----QAYTSTSTAAVGTVTHKSLQELQFEMLKRGLDLTHAFRYEEAEDVYTELIGLFDSDYAALNDRDKQLVAKAFSNRGNVRCSLSRVSEALLDYSRSIELAP-SAEYYTNRGLAFEMMADSLLPDRESDAFQFYETAIADYDHALVLDPENHRLYLNAGDVLTRTRQHDMALEYYRRALVLLPASPATRGKVALLEVENGNVARGIFMLETITQRNPDYAEMLLAIAALDWTLGRFVVGIDYYREAIARDPRLLDSDYLKMDCHWPPTMLKMVGKLREAGTMDGLRSTAVSWFDSRGNLI 409 NRK A+R TLG TAGA+W LT+G + A PS A +S+ G V KS+ EL+FEMLK+GLDLTHAF++EEAEDVYTELIGLFDSDY +L+D++KQLVAKAFSNRGNVRCSL+RVSEALLDYSRSIEL P +AEY+TNRGLAFE++AD+LL RE DAFQFYETAIADY+HALV+DPENHRLYLNAGDVLTRTR+HD+ALEYYRRAL L P SPA+RGKVALLEVENGNV RG++MLE+I +RNPD+AEMLLA AALDWTLGRFV G+D YREA++RDPRL D YLKMDCHWPPTMLKM+ KLREAGT++GLRSTAVSWFDSRG++I Sbjct: 75 NRKDAVRSLNAWTLGATAGATWAALTMGGSRANSPSVPDLAPMAASSSDGPVEGAVVRKSVPELRFEMLKKGLDLTHAFQFEEAEDVYTELIGLFDSDYTSLSDQEKQLVAKAFSNRGNVRCSLTRVSEALLDYSRSIELCPDTAEYWTNRGLAFEVIADALLATREKDAFQFYETAIADYEHALVMDPENHRLYLNAGDVLTRTRRHDLALEYYRRALALFPMSPASRGKVALLEVENGNVGRGMYMLESINRRNPDFAEMLLASAALDWTLGRFVEGVDSYREAVSRDPRLFDDSYLKMDCHWPPTMLKMLDKLREAGTIEGLRSTAVSWFDSRGDII 414
BLAST of NO18G01260 vs. NCBI_GenBank
Match: EWM23342.1 (tetratricopeptide tpr_1 repeat-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 353.6 bits (906), Expect = 8.200e-94 Identity = 184/255 (72.16%), Postives = 214/255 (83.92%), Query Frame = 0 Query: 75 NRKGALRRYVRVTLGLTAGASWTGLTVGNAGAALPSA-----QAYTSTSTAAVGTVTHKSLQELQFEMLKRGLDLTHAFRYEEAEDVYTELIGLFDSDYAALNDRDKQLVAKAFSNRGNVRCSLSRVSEALLDYSRSIELAP-SAEYYTNRGLAFEMMADSLLPDRESDAFQFYETAIADYDHALVLDPENHRLYLNAGDVLTRTRQHDMALEYYRRALVLLPASPATRGKVALLEVENGNVARGIFMLETITQR 324 NRK A+R TLG TAGA+W LT+G + A PS A +S+ G V KS+ EL+FEMLK+GLDLTHAF++EEAEDVYTELIGLFDSDY +L+D++KQLVAKAFSNRGNVRCSL+RVSEALLDYSRSIEL P +AEY+TNRGLAFE++AD+LL RE DAFQFYETAIADY+HALV+DPENHRLYLNAGDVLTRTR+HD+ALEYYRRAL L P SPA+RGKVALLEVENGNV RG++MLE+I +R Sbjct: 75 NRKDAVRSLNAWTLGATAGATWAALTMGGSRANSPSVPDLAPMAASSSDGPVEGAVVRKSVPELRFEMLKKGLDLTHAFQFEEAEDVYTELIGLFDSDYTSLSDQEKQLVAKAFSNRGNVRCSLTRVSEALLDYSRSIELCPDTAEYWTNRGLAFEVIADALLATREKDAFQFYETAIADYEHALVMDPENHRLYLNAGDVLTRTRRHDLALEYYRRALALFPMSPASRGKVALLEVENGNVGRGMYMLESINRR 329
BLAST of NO18G01260 vs. NCBI_GenBank
Match: CEM05563.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 205.7 bits (522), Expect = 2.800e-49 Identity = 103/256 (40.23%), Postives = 164/256 (64.06%), Query Frame = 0 Query: 134 QFEMLKRGLDLTHAFRYEEAEDVYTELIGLFDSDYAALNDRDKQLVAKAFSNRGNVRCSLSRVSEALLDYSRSIELAP-SAEYYTNRGLAFEMMADSLLPDRESDAFQFYETAIADYDHALVLDPENHRLYLNAGDVLTRTRQHDMALEYYRRALVLLPASPATRGKVALLEVENGNVARGIFMLETITQRNPDYAEMLLAIAALDWTLGRFVVGIDYYREAIARDPRLLDSDYLKMDCHWPPTMLKMVGKLREAG 389 Q+ + K GL+ T F ++EAE ++TE+I +++ A ++R + ++A+A+++RGN R SL +++AL+DYS +IE AP A+++ NR +A E A+ L A Q+Y+ A+ DY+HALVL P + RLY N G++LT D ALE +R+A L P++ A + ++ALL+ + G+V R F++ I +R+PDY EM+LA + LDW +GRF G Y ++ +P LLD +L D WPP ++ + LR AG Sbjct: 141 QYSLFKAGLEETAKFDFKEAEGIFTEIIDSYETPKAKESERARFMLARAYTDRGNTRVSLGELNKALVDYSCAIEYAPDEADFWLNRAIACEQKAEQSLTSSLQFANQWYKEALEDYEHALVLKPSDPRLYANTGEILTLLEDFDAALEKFRQASALAPSNVAYKARIALLDAQLGDVRRSHFIINDIVRRSPDYWEMVLAKSMLDWNVGRFAEGAYLYDISVQENPLLLDDRHLVRDLRWPPYFVEGLRNLRMAG 396
BLAST of NO18G01260 vs. NCBI_GenBank
Match: CBJ28868.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 133.3 bits (334), Expect = 1.700e-27 Identity = 80/181 (44.20%), Postives = 118/181 (65.19%), Query Frame = 0 Query: 120 AAVGTVTHKSLQELQFEMLKRGLDLTHAFRYEEAEDVYTELIGLFDS-DYAALNDRDKQLVAKAFSNRGNVRCSLSRVSEALLDYSRSIELAP-SAEYYTNRGLAFEMMADSLL---PDRESD-AFQFYETAIADYDHALVLDPENHRLYLNAGDVLTRTRQHDMALEYYRRALVLLPASP 295 A+ + ++S E+Q+E+ KRG++L + AE +TE+I F+S ++ A N +K L+A+A+SNRGN R SL + EA+LDYS SI+L P E++ RG+AFE MAD + DR + A FYE+A+ADYDHA+VLDP++ R+Y++ GD T Q AL+ Y RA+ L P +P Sbjct: 137 ASSDVLPNRSPFEMQYELFKRGMELEDDDDFVGAERQWTEIIENFNSPNFRATNPGNKVLLARAYSNRGNTRLSLQKTREAILDYSESIDLVPEKGEFWLARGVAFEDMADRKVLARADRNVEVARTFYESALADYDHAVVLDPQDPRVYISRGDANTLLGQGRDALDNYIRAVNLSPMTP 317
BLAST of NO18G01260 vs. NCBI_GenBank
Match: XP_024398472.1 (uncharacterized protein LOC112293384 [Physcomitrella patens] >PNR59545.1 hypothetical protein PHYPA_002336 [Physcomitrella patens]) HSP 1 Score: 115.2 bits (287), Expect = 4.900e-22 Identity = 81/284 (28.52%), Postives = 138/284 (48.59%), Query Frame = 0 Query: 101 VGNAGAALPSAQAYTSTSTAAVGTVTHKSLQELQFEMLKRGLDLTHAFRYEEAEDVYTELIGLFDSDYAALNDRDKQLVAKAFSNRGNVRCSLSRVSEALLDYSRSIELAPSAEY-YTNRGLAFEMMADSLLPDRESDAFQFYETAIADYDHALVLDPENHRLYLNAGDVLTRTRQHDMALEYYRRALVLLPASPATRGKVALLEVENGNVARGIFMLETITQRNPDYAEMLLAIAALDWTLGRFVVGIDYYREAIARDPRLLDSDYLKMDCHWPPTMLKMVGK 384 +G G +LP + S A + + + L+++++ L+ L A E+AE +++ELI + A +SNRG+VR SL + +A D++++I LAP A + NR +++E M ++ AIAD A++ DPE + + N G+V R R +D AL Y RA L P R K AL+ E + +++ + ++ P+YAE +AA+ W G + + EA R+PR D ++ + WPP ++ +GK Sbjct: 69 LGLFGISLPLLAGFASNLEAEAASRSVR-LKDVEYPKLQEALRAAVAGDLEKAETMFSELI------------EEDPKSASVWSNRGSVRVSLQKYEQAAEDFTKAIALAPDAPVPFLNRAISYEAMGR-------------FDDAIADCKTAIINDPEEYAAWFNLGNVEVRVRDYDAALNAYSRASRLAPGIAGYRLKEALVLFELNRLEECRKLVQGLVRKYPNYAEAHAVLAAVLWKEGNRDLAEGQFSEATVREPRYKDIRWVGNELQWPPGLMTAMGK 326
BLAST of NO18G01260 vs. NCBI_GenBank
Match: XP_005645919.1 (TPR-like protein [Coccomyxa subellipsoidea C-169] >EIE21375.1 TPR-like protein [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 111.7 bits (278), Expect = 5.400e-21 Identity = 65/206 (31.55%), Postives = 107/206 (51.94%), Query Frame = 0 Query: 180 AKAFSNRGNVRCSLSRVSEALLDYSRSIELAPSAEY-YTNRGLAFEMM-ADSLLPDRESDAFQFYETAIADYDHALVLDPENHRLYLNAGDVLTRTRQHDMALEYYRRALVLLPASPATRGKVALLEVENGNVARGIFMLETITQRNPDYAEMLLAIAALDWTLGRFVVGIDYYREAIARDPRLLDSDYLKMDCHWPPTMLKMVGK 384 A A+SN GNV S R EA+ D+SR+I +AP+A Y NR +A E + ++ +++A + YE A+ D A D + + N G+V R Q++ AL Y RA L P R + A L +N A M+ + ++NP+YAE A+AA++W G+ +++ +A++ D R +++ WPP + + K Sbjct: 31 ASAYSNLGNVHLSEGRAEEAVRDFSRAIAIAPTAPVPYLNRAIAEEQLGVNAASSGNQAEAERHYEAALRDCRDAQDRDSKEFAAFFNEGNVQVRVGQYEAALAAYSRAADLAPGIAGYRLRQAELLFQNARPADADSMMRGVVRKNPNYAEAQAALAAVEWVSGQQGKAEEHFDKAVSLDGRWRKMGFIRQQTRWPPALYDAMEK 236
BLAST of NO18G01260 vs. NCBI_GenBank
Match: ABR16086.1 (unknown [Picea sitchensis]) HSP 1 Score: 109.8 bits (273), Expect = 2.100e-20 Identity = 80/282 (28.37%), Postives = 132/282 (46.81%), Query Frame = 0 Query: 99 LTVGNAGAALPSAQAYTSTSTAAVGTVTHKSLQELQFEMLKRGLDLTHAFRYEEAEDVYTELIGLFDSDYAALNDRDKQLVAKAFSNRGNVRCSLSRVSEALLDYSRSIELAPSAEY-YTNRGLAFEMMADSLLPDRESDAFQFYETAIADYDHALVLDPENHRLYLNAGDVLTRTRQHDMALEYYRRALVLLPASPATRGKVALLEVENGNVARGIFMLETITQRNPDYAEMLLAIAALDWTLGRFVVGIDYYREAIARDPRLLDSDYLKMDCHWPPTMLK 380 L +G A + + Y + A L++++ L+ L A E +E ++TELI + D + A +SNRG+VR S+ + EA D+S++I LAP A + NR +A+E A +Y+ AI D A+V DPE + N G+V + + +D AL Y RA L P R K AL+ + ++E + ++ P+YAE A+AA+ W+ R D + EA R+P + ++ WPP++++ Sbjct: 95 LVMGLISAVFCAQKNYGHVAVARAAVSKRVRLKDVENPKLQEALRAAVAGDLENSERIFTELI-----------EEDPE-NASGWSNRGSVRLSMDKFDEATADFSKAINLAPEAPVPFLNRAIAYE-------------ALGYYKDAIEDCKSAIVNDPEEFAAWYNLGNVDVKVQDYDGALVAYERASALAPGIAGYRLKQALVLFQLNRPVEARKLVEGLVRKYPNYAEAHAALAAILWSEDRRSSAEDQFTEATIREPLYREIGWVNTALQWPPSIVQ 351
BLAST of NO18G01260 vs. NCBI_GenBank
Match: XP_024536157.1 (UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit-like [Selaginella moellendorffii]) HSP 1 Score: 107.5 bits (267), Expect = 1.000e-19 Identity = 77/280 (27.50%), Postives = 131/280 (46.79%), Query Frame = 0 Query: 108 LPSAQAYTSTSTAAVGTVTHKSLQELQFEMLKRGLDLTHAFRYEEAEDVYTELIGLFDSDYAALNDRDKQLVAKAFSNRGNVRCSLSRVSEALLDYSRSIELAPSAEY-YTNRGLAFEMMADSLLPDRESDAFQFYETAIADYDHALVLDPENHRLYLNAGDVLTRTRQHDMALEYYRRALVLLPASPATRGKVALLEVENGNVARGIFMLETITQRNPDYAEMLLAIAALDWTLGRFVVGIDYYREAIARDPRLLDSDYLKMDCHWPPTMLKMVGKLRE 387 +P+ + TS A V L+++ L+ + + ++ AE +++EL+ D++ A +SNRGNVR SL + +AL DY++++ LAP A NR +A E + + Y AIAD + A+ +DP + + N G+V R + + A Y RA L P R K AL+ + V +L+ + ++ P+YAE A+AAL W G D + +A ++P D+ ++ WPP ++ + K E Sbjct: 45 VPATLLFGLTSVARCEQV---RLEDVDNPKLREAIRAAVSGDFDYAEALFSELLSEDDTN------------ASVWSNRGNVRVSLKKYQQALEDYTKAVILAPGAPVPLLNRAIANEALGN-------------YGDAIADCEAAIKIDPREYAAWYNLGNVDVRVKNYAAAASAYERAATLAPGIAGYRFKQALVLFQLDQVQAAKKLLQGLVRKYPNYAEAHAALAALLWKEGNRSQAEDQFNQAGVQNPNFSDARWISSSLEWPPAVVDAMDKFLE 296
BLAST of NO18G01260 vs. NCBI_GenBank
Match: XP_024534367.1 (small glutamine-rich tetratricopeptide repeat-containing protein alpha-like isoform X1 [Selaginella moellendorffii]) HSP 1 Score: 106.7 bits (265), Expect = 1.800e-19 Identity = 77/280 (27.50%), Postives = 131/280 (46.79%), Query Frame = 0 Query: 108 LPSAQAYTSTSTAAVGTVTHKSLQELQFEMLKRGLDLTHAFRYEEAEDVYTELIGLFDSDYAALNDRDKQLVAKAFSNRGNVRCSLSRVSEALLDYSRSIELAPSAEY-YTNRGLAFEMMADSLLPDRESDAFQFYETAIADYDHALVLDPENHRLYLNAGDVLTRTRQHDMALEYYRRALVLLPASPATRGKVALLEVENGNVARGIFMLETITQRNPDYAEMLLAIAALDWTLGRFVVGIDYYREAIARDPRLLDSDYLKMDCHWPPTMLKMVGKLRE 387 +P+ + TS A V L+++ L+ + + ++ AE +++EL+ D++ A +SNRGNVR SL + +AL DY++++ LAP A NR +A E + + Y AIAD + A+ +DP + + N G+V R + + A Y RA L P R K AL+ + V +L+ + ++ P+YAE A+AAL W G D + +A ++P D+ ++ WPP ++ + K E Sbjct: 45 VPATLLFGLTSVARCEQV---RLEDVDNPKLREAIRAAVSGDFDYAEALFSELLSEDDTN------------ASVWSNRGNVRVSLKKYQQALEDYTKAVILAPGAPVPLLNRAIANEALGN-------------YGDAIADCEAAIKIDPREYAAWYNLGNVDVRVKNYAAAASAYERAATLAPGIAGYRFKQALVLFQLDQVQAAKKLLQGLVRKYPNYAEAHAALAALLWKEGNRSQAEDQFNQAGVQNPNFSDARWIGSSLEWPPAVVDAMDKFLE 296
BLAST of NO18G01260 vs. NCBI_GenBank
Match: PRW60068.1 (tetratricopeptide repeat [Chlorella sorokiniana]) HSP 1 Score: 100.9 bits (250), Expect = 9.600e-18 Identity = 71/250 (28.40%), Postives = 117/250 (46.80%), Query Frame = 0 Query: 130 LQELQFEMLKRGLDLTHAFRYEEAEDVYTELIGLFDSDYAALNDRDKQLVAKAFSNRGNVRCSLSRVSEALLDYSRSIELAPSAEY-YTNRGLAFEMMADSLLPDRESDAFQ-FYETAIADYDHALVLDPENHRLYLNAGDVLTRTRQHDMALEYYRRALVLLPASPATRGKVALLEVENGNVARGIFMLETITQRNPDYAEMLLAIAALDWTLGRFVVGIDYYREAIARDPRLLDSDYLKMDCHWPPTM 378 L++++ L+ GL R E+AE ++ + LN+ + A A SN GNV + A+ DYSR++ELAP A Y NR +A E + +S Q + +A D A+ LDP+ + + G++ R D AL +RRA L P R + A L + G+ M++ + ++ P YAE +AA+DW G + + A+ +PR D +++ + WPP + Sbjct: 15 LEDVESSTLRAGLRAAVEGRLEDAERLFQVYL---------LNEDPQS--ASAHSNLGNVHQQQGKPELAVQDYSRAVELAPQAPVPYLNRAIAKETLGVQAAQRGDSQGAQTLWRSAAEDASRAIELDPKEFAAWFDRGNIDMRLSDFDGALADFRRAADLAPGLAGYRLREATLLFQTGDTGGARRMIQGVVRKVPAYAEAHACLAAVDWAQGEGERAEEQFLRALEIEPRWGDVAWVQANTRWPPAL 253 The following BLAST results are available for this feature:
BLAST of NO18G01260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO18G01260 ID=NO18G01260|Name=NO18G01260|organism=Nannochloropsis oceanica|type=gene|length=3300bpback to top protein sequence of NO18G01260.1 >NO18G01260.1-protein ID=NO18G01260.1-protein|Name=NO18G01260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=409bpback to top Synonyms
Publications
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