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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr18 | genome | chr18:417760..420684 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO18G01200.1 vs.
Match: EWM23303.1 (stage iv sporulation protein fb [Nannochloropsis gaditana]) HSP 1 Score: 586.3 bits (1510), Expect = 7.500e-164 Identity = 310/412 (75.24%), Postives = 340/412 (82.52%), Query Frame = 0
Query: 1 MNR-TGTGNNPAGVADNPFPKQWAWQMGTIHLKGQVVPVKLHFLLPIFWVLSLLSGLAYGGTYIGFRFIIDVLILFVTVFAHELGHSYAAIQYSGKCHCITLWPLGGFAEVTHEQGPKEDLWVSFAGPLTHVPMCAIWYGIVAAVVRGPFNIMTIPCDLFNSQPCFWTNVCVSAGFLNICLFLFNLLIPAYPLDASRILVDFFALCKVEVNKAALITAGISMPIGLGLLCYGFWGFSRGAANYTMTLFLAIFILYSTWGVFKAARSGNAARHPMFVHYYRTSVPVDASSSSSSSSSTTGFGAANATAGGRIMSLWGGGSATAGADGDPAGTGGPVATSGGVTAFSKMEAGKGHRLGGKAAPTGVPAAAPVGGGRSTSQSALLSSQGSSSS---SNILGGPPGGKGGHRLGSK 409
MNR TGTGNNPAGVADNPFP QWAWQ+G I L+GQ VPVKLHFLLPIFWVLSLLSGLAYGGTYIGFRFI+DVLILF+TVF HE+GHS AAIQYSGKCHCITLWPLGGFAEVTHE+GPKEDLWVSFAGPLTH+PMCAIWYGIVAAVV+ PFNIM IPCDL +SQ CFWTNV VSAGFLN+CLFLFNL IPAYPLDASRILVDFFALC VEVN+AALITA IS PIGL LL YGFW F+RGAANYTMT+FLAIFILYSTWGV KAARSG AARHPMF+HYYRTS P +++++SSS++ G A++TAGG+I SLWG G A G G GG S G SKMEAGKGHRLGGK + PA G R+TSQSALL+ SSS+ S+ LGG KGG+RLGSK
Sbjct: 1 MNRNTGTGNNPAGVADNPFPNQWAWQIGAITLRGQRVPVKLHFLLPIFWVLSLLSGLAYGGTYIGFRFIVDVLILFMTVFIHEMGHSLAAIQYSGKCHCITLWPLGGFAEVTHEKGPKEDLWVSFAGPLTHIPMCAIWYGIVAAVVKRPFNIMAIPCDLLHSQACFWTNVAVSAGFLNMCLFLFNLFIPAYPLDASRILVDFFALCNVEVNRAALITACISFPIGLALLGYGFWAFARGAANYTMTIFLAIFILYSTWGVIKAARSGTAARHPMFIHYYRTSEPPVSATAASSSNA----GTASSTAGGQITSLWGSGLVGTSAAG--TGVGG---ESTGGNVLSKMEAGKGHRLGGKPVTSSTPAGNLAVGARTTSQSALLTGSSSSSAAAGSSTLGG--ASKGGYRLGSK 401
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO18G01200.1 ID=NO18G01200.1|Name=NO18G01200.1|organism=Nannochloropsis oceanica|type=mRNA|length=2831bp ATAGAGAGATGATGCCCAAGTTATGCCTTCTCCCCGAAACAGTGCATAGC ATACCCCTCAAACGCCGAGTCCCATTGATCCTTCAATGCGCACAACCCAC AACCAGCACTTTGTTGCCTCGGAGCTGTCGCACGCTCCTTCTATTCCTCC CACCGCATACTTGACAGGCGCAAACTAAAGCTGCTTCTGGGCCTTGCTTC GTCGTGCTCTGGGTTGTTCTGCTATCGCTTCCCGCGCTACGACGTCCAAG CGCACAATACCGACGCTCATCTCTTTTCTCGAACCTGTCACCATCACAGT ATACTCAGAAGCCTGTCTATTCTTACTTCTCCGCGGTTTTCTTTTCACCC AAGTCCCCTATTCAGCCACGGCCAGTAACACGCCCCTCATCATGAACCGC ACTGGCACGGGCAACAACCCGGCTGGCGTTGCGGACAATCCCTTCCCGAA GCAATGGGCATGGCAAATGGGCACGATTCATCTCAAGGGGCAGGTGGTGC CGGTCAAGCTTCATTTCCTGCTCCCCATTTTCTGGGTCTTGAGCTTGCTG TCCGGCCTGGCGTATGGAGGGACTTACATTGGTTTTCGGTTTATCATCGA TGTGCTCATCTTATTCGTGACAGTGTTTGCCCACGAGCTCGGGCATAGTT ACGCCGCCATTCAGTACAGTGGGAAATGCCATTGTATTACTCTGTGGCCC CTTGGGGGTTTTGCGGAAGTCACGCATGAGCAGGGCCCGAAGGAGGACTT GTGGGTGTCGTTTGCTGGCCCGTTGACGCACGTGCCGATGTGCGCTATTT GGTATGGAATTGTCGCGGCGGTTGTAAGGGGACCCTTCAATATTATGACC ATCCCGTGCGATCTTTTCAACTCTCAACCCTGCTTCTGGACCAATGTCTG CGTCTCCGCCGGCTTTTTGAATATCTGCCTGTTTCTCTTCAACCTGTTGA TCCCCGCCTACCCCCTGGACGCCTCCCGCATTCTCGTCGATTTTTTCGCT TTGTGCAAAGTAGAAGTAAACAAGGCGGCGCTCATAACGGCAGGGATTTC TATGCCCATCGGTTTGGGGTTGCTATGCTATGGGTTTTGGGGTTTTTCCA GGGGGGCAGCTAACTATACAATGACTCTTTTTCTTGCTATTTTTATCCTG TACTCCACCTGGGGGGTGTTTAAGGCCGCCCGATCGGGCAACGCTGCCAG GCATCCTATGTTTGTTCATTACTATCGCACCAGCGTGCCAGTCGACGCCT CAAGCAGCAGTAGCAGCAGCAGTAGCACTACGGGTTTTGGAGCAGCGAAC GCAACAGCTGGAGGGAGAATCATGTCGCTGTGGGGAGGGGGGAGTGCCAC GGCTGGCGCGGATGGGGATCCTGCTGGTACGGGCGGACCTGTTGCTACAA GTGGTGGGGTCACTGCCTTCTCAAAAATGGAAGCAGGCAAGGGGCATCGG TTGGGAGGGAAGGCGGCACCAACAGGAGTGCCTGCAGCAGCACCAGTGGG AGGAGGGAGGAGCACGAGTCAATCGGCCTTGTTGTCCTCGCAGGGGTCCT CGTCGTCATCTAATATTTTGGGAGGGCCACCCGGTGGGAAGGGTGGTCAT CGGTTGGGCTCAAAATAACAAGGAGGGGGAAAGGAAGGGTAGAAGGATGT GAGATGCGATGTGAAAAAATGAGTGTTGCGGAAATTGAGTCTTTCTGTGA CCGTGGTATGCAAACAGAAGAAGCAATCAAGTGAGGGAAAAGAGAAGCAT AAGGAATCAGTAGTCAAAAAGAGGAAGAAGAGGTCGTGTACATTGATGGC GGGATCTGCCACGGACTTGAGAGAGACGCCTTATATTTCATAAAGTTATC CCTTCCATTACTCTCGTACAATCACAATATAACAAGAAAAAGAAACAGAC GAAAGTATGATAAAAAAGAGGCCAAAGCATCAGCGGCACACCATCATCCA ACACAAAAAGAATGAACTAAGAGTGAGGAGGAAACTGATTGACAACGAGA GGACAAATGATTTCATCTCTCTTTTGGGATTGTTCAGGAGGAAAATGATA GGCAATGAGAAAGCAACTTGTTTCATCTCTCTTTTCGGGTTGTTCTTTCC TTGTGCAAATCGCTCCTTCCGCCGCCCTTCCTTTTTACACCATCCTAGTT GGCCGCTTCTCCTACTTTTCTTAGACCTTTTCCTAGTCTTGCCCCTCTTC TTCTCTTCGGGGCTGTCCCCCACCTTGCCACTCTTTCTGTCGACCCACCA AGCTCCTAATTGACTCTTTCTCCGTCGTTTTTCATCCAAGCCCAATGCCA TCTTTCACCTCCATCTCTTTCCCCGCACCTGCTGGCCTGAGGGTATGGAA ATAAACCTCACTTTATCTCTATATTCCTTTCGCTGCCATCCCCCTCGTGT TGTTTCCCTCCTCCCTATCCCGCGATTCCTACGTCTCCTCTCTTCCTCCC TTCCACCTCTCCACCGGCGTGGAGAGGGAAAGACAATAGCAGCAGCAGCA GCAGCAGCAGCGAGTAGCGGGCATGCTTGCATATTGTGCATTGTGATTAT TTTATTTTTCCCACCCACAAATGGAAAGCCCGCACGCGAGCTTCCTTCAT ATTTGCCTACCATCCACCGCTATCCACTCGACGCATCAGTCCTATCGCAC CCGATTTTCTCTCTGTTCGCACTCTCTTGTTCCTCTCCTCCTTCTGTCTG TATGTAACTCTTTCGCAGCCCAAAAGAGAGCAAGAAGTAAGACAAGACGA CTTTTTCCTCTTCTTCAGTCTACCAGTTGGAACACACAAGAAATGCGCAC AACACATACACACACACACACACACACACAC back to topprotein sequence of NO18G01200.1 >NO18G01200.1-protein ID=NO18G01200.1-protein|Name=NO18G01200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=409bp MNRTGTGNNPAGVADNPFPKQWAWQMGTIHLKGQVVPVKLHFLLPIFWVL SLLSGLAYGGTYIGFRFIIDVLILFVTVFAHELGHSYAAIQYSGKCHCIT LWPLGGFAEVTHEQGPKEDLWVSFAGPLTHVPMCAIWYGIVAAVVRGPFN IMTIPCDLFNSQPCFWTNVCVSAGFLNICLFLFNLLIPAYPLDASRILVD FFALCKVEVNKAALITAGISMPIGLGLLCYGFWGFSRGAANYTMTLFLAI FILYSTWGVFKAARSGNAARHPMFVHYYRTSVPVDASSSSSSSSSTTGFG AANATAGGRIMSLWGGGSATAGADGDPAGTGGPVATSGGVTAFSKMEAGK GHRLGGKAAPTGVPAAAPVGGGRSTSQSALLSSQGSSSSSNILGGPPGGK GGHRLGSK* back to topmRNA from alignment at chr18:417760..420684+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO18G01200.1 ID=NO18G01200.1|Name=NO18G01200.1|organism=Nannochloropsis oceanica|type=mRNA|length=2925bp|location=Sequence derived from alignment at chr18:417760..420684+ (Nannochloropsis oceanica) ATAGAGAGATGATGCCCAAGTTATGCCTTCTCCCCGAAACAGTGCATAGC
ATACCCCTCAAACGCCGAGTCCCATTGATCCTTCAATGCGCACAACCCAC
AACCAGCACTTTGTTGCCTCGGAGCTGTCGCACGCTCCTTCTATTCCTCC
CACCGCATACTTGACAGGCGCAAACTAAAGCTGCTTCTGGGCCTTGCTTC
GTCGTGCTCTGGGTTGTTCTGCTATCGCTTCCCGCGCTACGACGTCCAAG
CGCACAATACCGACGCTCATCTCTTTTCTCGAACCTGTCACCATCACAGT
ATACTCAGAAGCCTGTCTATTCTTACTTCTCCGCGGTTTTCTTTTCACCC
AAGTCCCCTATTCAGCCACGGCCAGTAACACGCCCCTCATCATGAACCGC
ACTGGCACGGGCAACAACCCGGCTGGCGTTGCGGACAATCCCTTCCCGAA
GCAATGGGCATGGCAAATGGGCACGATTCATCTCAAGGGGCAGGTGGTGC
CGGTCAAGCTTCATTTCCTGCTCCCCATTTTCTGGGTCTTGAGCTTGCTG
TCCGGCCTGGCGTATGGAGGGACTTACATTGGTTTTCGGTTTATCATCGA
TGTGCTCATCTTATTCGTGACAGTGTTTGCCCACGAGCTCGGGCATAGTT
ACGCCGCCATTCAGTACAGTGGGAAATGCCATTGTATTACTCTGTGGCCC
CTTGGGGGTTTTGCGGAAGTCACGCATGAGCAGGGCCCGAAGGAGGACTT
GTGGGTGTCGTTTGCTGGCCCGTTGACGCACGTGCCGATGTGCGCTATTT
GGTATGGAATTGTCGCGGCGGTTGTAAGGGGACCCTTCAATATTATGAGT
ACGTACGAGGGTTGTGTGTGTCATTATTGAGGGTTTGTTCCATCCAACGC
AATCCTCAACCTCCTCTCTCTTCTCTCCCCCATCCCCTTTAGCCATCCCG
TGCGATCTTTTCAACTCTCAACCCTGCTTCTGGACCAATGTCTGCGTCTC
CGCCGGCTTTTTGAATATCTGCCTGTTTCTCTTCAACCTGTTGATCCCCG
CCTACCCCCTGGACGCCTCCCGCATTCTCGTCGATTTTTTCGCTTTGTGC
AAAGTAGAAGTAAACAAGGCGGCGCTCATAACGGCAGGGATTTCTATGCC
CATCGGTTTGGGGTTGCTATGCTATGGGTTTTGGGGTTTTTCCAGGGGGG
CAGCTAACTATACAATGACTCTTTTTCTTGCTATTTTTATCCTGTACTCC
ACCTGGGGGGTGTTTAAGGCCGCCCGATCGGGCAACGCTGCCAGGCATCC
TATGTTTGTTCATTACTATCGCACCAGCGTGCCAGTCGACGCCTCAAGCA
GCAGTAGCAGCAGCAGTAGCACTACGGGTTTTGGAGCAGCGAACGCAACA
GCTGGAGGGAGAATCATGTCGCTGTGGGGAGGGGGGAGTGCCACGGCTGG
CGCGGATGGGGATCCTGCTGGTACGGGCGGACCTGTTGCTACAAGTGGTG
GGGTCACTGCCTTCTCAAAAATGGAAGCAGGCAAGGGGCATCGGTTGGGA
GGGAAGGCGGCACCAACAGGAGTGCCTGCAGCAGCACCAGTGGGAGGAGG
GAGGAGCACGAGTCAATCGGCCTTGTTGTCCTCGCAGGGGTCCTCGTCGT
CATCTAATATTTTGGGAGGGCCACCCGGTGGGAAGGGTGGTCATCGGTTG
GGCTCAAAATAACAAGGAGGGGGAAAGGAAGGGTAGAAGGATGTGAGATG
CGATGTGAAAAAATGAGTGTTGCGGAAATTGAGTCTTTCTGTGACCGTGG
TATGCAAACAGAAGAAGCAATCAAGTGAGGGAAAAGAGAAGCATAAGGAA
TCAGTAGTCAAAAAGAGGAAGAAGAGGTCGTGTACATTGATGGCGGGATC
TGCCACGGACTTGAGAGAGACGCCTTATATTTCATAAAGTTATCCCTTCC
ATTACTCTCGTACAATCACAATATAACAAGAAAAAGAAACAGACGAAAGT
ATGATAAAAAAGAGGCCAAAGCATCAGCGGCACACCATCATCCAACACAA
AAAGAATGAACTAAGAGTGAGGAGGAAACTGATTGACAACGAGAGGACAA
ATGATTTCATCTCTCTTTTGGGATTGTTCAGGAGGAAAATGATAGGCAAT
GAGAAAGCAACTTGTTTCATCTCTCTTTTCGGGTTGTTCTTTCCTTGTGC
AAATCGCTCCTTCCGCCGCCCTTCCTTTTTACACCATCCTAGTTGGCCGC
TTCTCCTACTTTTCTTAGACCTTTTCCTAGTCTTGCCCCTCTTCTTCTCT
TCGGGGCTGTCCCCCACCTTGCCACTCTTTCTGTCGACCCACCAAGCTCC
TAATTGACTCTTTCTCCGTCGTTTTTCATCCAAGCCCAATGCCATCTTTC
ACCTCCATCTCTTTCCCCGCACCTGCTGGCCTGAGGGTATGGAAATAAAC
CTCACTTTATCTCTATATTCCTTTCGCTGCCATCCCCCTCGTGTTGTTTC
CCTCCTCCCTATCCCGCGATTCCTACGTCTCCTCTCTTCCTCCCTTCCAC
CTCTCCACCGGCGTGGAGAGGGAAAGACAATAGCAGCAGCAGCAGCAGCA
GCAGCGAGTAGCGGGCATGCTTGCATATTGTGCATTGTGATTATTTTATT
TTTCCCACCCACAAATGGAAAGCCCGCACGCGAGCTTCCTTCATATTTGC
CTACCATCCACCGCTATCCACTCGACGCATCAGTCCTATCGCACCCGATT
TTCTCTCTGTTCGCACTCTCTTGTTCCTCTCCTCCTTCTGTCTGTATGTA
ACTCTTTCGCAGCCCAAAAGAGAGCAAGAAGTAAGACAAGACGACTTTTT
CCTCTTCTTCAGTCTACCAGTTGGAACACACAAGAAATGCGCACAACACA
TACACACACACACACACACACACAC back to topCoding sequence (CDS) from alignment at chr18:417760..420684+ >NO18G01200.1 ID=NO18G01200.1|Name=NO18G01200.1|organism=Nannochloropsis oceanica|type=CDS|length=1227bp|location=Sequence derived from alignment at chr18:417760..420684+ (Nannochloropsis oceanica) ATGAACCGCACTGGCACGGGCAACAACCCGGCTGGCGTTGCGGACAATCC CTTCCCGAAGCAATGGGCATGGCAAATGGGCACGATTCATCTCAAGGGGC AGGTGGTGCCGGTCAAGCTTCATTTCCTGCTCCCCATTTTCTGGGTCTTG AGCTTGCTGTCCGGCCTGGCGTATGGAGGGACTTACATTGGTTTTCGGTT TATCATCGATGTGCTCATCTTATTCGTGACAGTGTTTGCCCACGAGCTCG GGCATAGTTACGCCGCCATTCAGTACAGTGGGAAATGCCATTGTATTACT CTGTGGCCCCTTGGGGGTTTTGCGGAAGTCACGCATGAGCAGGGCCCGAA GGAGGACTTGTGGGTGTCGTTTGCTGGCCCGTTGACGCACGTGCCGATGT GCGCTATTTGGTATGGAATTGTCGCGGCGGTTGTAAGGGGACCCTTCAAT ATTATGACCATCCCGTGCGATCTTTTCAACTCTCAACCCTGCTTCTGGAC CAATGTCTGCGTCTCCGCCGGCTTTTTGAATATCTGCCTGTTTCTCTTCA ACCTGTTGATCCCCGCCTACCCCCTGGACGCCTCCCGCATTCTCGTCGAT TTTTTCGCTTTGTGCAAAGTAGAAGTAAACAAGGCGGCGCTCATAACGGC AGGGATTTCTATGCCCATCGGTTTGGGGTTGCTATGCTATGGGTTTTGGG GTTTTTCCAGGGGGGCAGCTAACTATACAATGACTCTTTTTCTTGCTATT TTTATCCTGTACTCCACCTGGGGGGTGTTTAAGGCCGCCCGATCGGGCAA CGCTGCCAGGCATCCTATGTTTGTTCATTACTATCGCACCAGCGTGCCAG TCGACGCCTCAAGCAGCAGTAGCAGCAGCAGTAGCACTACGGGTTTTGGA GCAGCGAACGCAACAGCTGGAGGGAGAATCATGTCGCTGTGGGGAGGGGG GAGTGCCACGGCTGGCGCGGATGGGGATCCTGCTGGTACGGGCGGACCTG TTGCTACAAGTGGTGGGGTCACTGCCTTCTCAAAAATGGAAGCAGGCAAG GGGCATCGGTTGGGAGGGAAGGCGGCACCAACAGGAGTGCCTGCAGCAGC ACCAGTGGGAGGAGGGAGGAGCACGAGTCAATCGGCCTTGTTGTCCTCGC AGGGGTCCTCGTCGTCATCTAATATTTTGGGAGGGCCACCCGGTGGGAAG GGTGGTCATCGGTTGGGCTCAAAATAA back to top
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