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Properties
| Property Name | Value |
|---|
| Description | Pentatricopeptide repeat-containing protein At2g31400, chloroplastic |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr18 | genome | chr18:392950..397824 + |
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Homology
BLAST of NO18G01120 vs. NCBI_GenBank
Match: XP_005855114.1 (hypothetical protein NGA_2092600 [Nannochloropsis gaditana CCMP526] >EKU21246.1 hypothetical protein NGA_2092600 [Nannochloropsis gaditana CCMP526] >EWM23318.1 Tetratricopeptide-like helical [Nannochloropsis gaditana]) HSP 1 Score: 293.5 bits (750), Expect = 1.600e-75 Identity = 166/236 (70.34%), Postives = 181/236 (76.69%), Query Frame = 0
Query: 15 YTSSTPRGSGRIRRLAGLCCLASCTSTVHAFMGPAAAKATPVAT--RPSTFRFLPSSSPSTPATAS----RTALHVAQIPVPMDWNVAAWPDLPFVNETAISGRDKDIRAGWARLSQMGVTLGRSPTSTLSTTARVILSPSHTKKSSADRAVRQIVAQGRLGKAVDLLVYLSEEEDGHQAIDRALVNFVLYNCMRRRDWTRALTVLDAPMIEVDIVGFTMAIKACGQARRWREALG 245
+ S T RG RIRRLAG CCLASC V AF+G A P++T R TF L S S RT L VAQIP PMDWNVAAWPDLP VNETA+SGR+ ++RAGWA+LS MG TL R S+ T +VILSPS +KKSSADRAVRQ+VAQGRLGKAVDLLV LSEEEDG AIDRALVNFVLYNCMRRRDWTRALTVLDAP+IEVD+VGFTMAIKACGQARRWREALG
Sbjct: 16 HASGTSRGHKRIRRLAGFCCLASCV-PVKAFLG-AGMGVGPMSTPVRAQTFHPLTYQSRHDGVANSILNGRTRLQVAQIPAPMDWNVAAWPDLPIVNETAMSGRNNEMRAGWAKLSHMGSTLTRPAQSSSGT--KVILSPSPSKKSSADRAVRQVVAQGRLGKAVDLLVSLSEEEDGLHAIDRALVNFVLYNCMRRRDWTRALTVLDAPLIEVDVVGFTMAIKACGQARRWREALG 247
The following BLAST results are available for this feature:
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO18G01120 ID=NO18G01120|Name=NO18G01120|organism=Nannochloropsis oceanica|type=gene|length=4875bp
GACATGCCTGTGCGTCCGCTTCTGGTCATGGTTGGTGTTAGAGTCGAGTG
TAAGGAAGTGAGTGCTTCGACAGCACCTCAAGCGGATCACTGCATCCCTA
TATATAGCTACAGGCGCTAATATGGCGGGCGTCACTTCTTGACATTGCGC
CCACACCTCTGAGTTAAGGTCATTCATTTCAGACAAGCGAATCCATGAGG
TTGGCAGATGCTCGGGCCACGGGATGTCCATCCGGGGAAGCTGGGTTGGT
CAAAGAAAGCTCCCAAATATGGAACACTCGGCCGCGAAGGATGCGAACGA
GATCGAGCGAGGCTTTCCAAAGACAGCTGACTGAATGGATATAATGCGAC
GTCACGTTTCGCGGACTTTGAGAATGGGCCGGACATGATTTATTTTGACA
CGATGACACCGTGGCAAGACGCCGTCTGTTTCCATACTTAGCTTAGCGTT
TGCTTTCACACATTTTAAATTGTTTCAAAGAAAGGATAGTGGCTGGATAT
ATATACACATAATATTTTTCTTTTTTATATATTTATCAATTACCTGTTCA
TTTTTTTATTCAATTTTCCCTTTTTTTTCTCTATCTTCTTATCTAATTTC
TCGCAAAAGCTCCATGTGACCATAATTATCGTTCACGCCGGACAGGTAGA
TTATGCTTAACCACGTTACATTCTAAAAGAAAAACGTGACACTTGGAGAA
GCACATCGGGTGGAGGAAAAATGAATACAGAGCGAAGGTAAGGTGCAAGG
GCGGGACCACTTGCTGGTAGACGCTCGGTGGGCAAATCCTTACAGTCATC
TGTAAATCTAAAGCTATACTGAAGGGTTGGTATTGTCACAGGGGCTGCAG
TCTCTTTTTCTCGCCTCAAGAGGCAAAGAAAGGACTGCTGACCGATGGCT
TAGATTGTGAGAGTTTTTTTCAGACACTAGGACAGGGGATAGGCGATGCC
GCCTTAACGAAAATGTTATCGACATATTGGATGTACAATGAGAGTGTAGG
TGCCAATCGTGATAATTACGCTGAGCAAAAGCCAACCCCCCAAGGTAGTG
CTGGACCATAAATACTACATTGAGAGATTGTATTGCTTGCCTGCCTCTGC
GATATTATCCTTGAGAATGTACCTCAAACGCACACATCAAGGGACCATAT
TCTCAACCCCATCTTGACAACGCGGTCGCACAAGGACACCAGCGGCAACG
GAACATATGACTCGAGTGGCGTCTGGTGCGCATATTCAACAGCAAGAGGA
AAAGAGGCAAGGTTGAAGTGTAGGTGGATCCGATTTTTTTCAAGTCCACG
ATTGCATGGTTTCAAGCACCCCACACGCTTCCTACATCTCTGAAACACAA
AAATGGCGTAATTCAGCGGTCTAAGTGGGGAAGAGAAGCCAACTTGTGAT
CGAACGAGCAAACACAGGAGGAAAAAGTGATTGGAAGGCGAGCTAGCCGA
ATTCGTTCGACCGTCGACCGGGCGGGCGACATGGCACGCTTATCGTATCA
AGAGTGCGTGTGGCTTCCTATTTTGCTCGCGTGGCGGATGTCTGGTTTGT
GTGCCTGGTGTACGCTTTAGCGCGGGTCTACTGGCGGAATTGACCTCCTG
TGTTGGTGAGGGGGAAAAGCAAGGCCTCGATTTCAAGATGCTTCTCTCAC
CACCACTCCTCCACTCCCCCTCCTGGCAGCTCTTATCGGATCGTCGCCGT
GTCGTCGTCGATGGATGTGTCACCCATTTTCCAACTTATTCTCCACACCA
CATTCCCTCCACAACTATATACAGCACCCACGCACGCGAGATTGAAGTCA
GAGATCGTTGACCGCTGATTGGGTAGTTATCCCAATCGAGGAAGTCACAA
GTCCGCCTCCGCAAGCCACACGTTCAGCAAGCAAAGCCAAACGAGCGCCT
GCCTGCTTCGACCATGACGACCGCATCCACAAGCACAACCCCCCAAGATC
TCCAGTACACCTCTAGTACGCCCCGCGGGAGCGGAAGAATAAGACGGCTG
GCTGGGCTTTGTTGCTTGGCCTCGTGCACTAGCACTGTCCACGCCTTCAT
GGGTCCAGCGGCGGCAAAGGCGACACCTGTTGCCACGCGGCCCTCCACGT
TCAGATTCCTACCTAGTAGCAGCCCGAGTACCCCCGCCACGGCCAGCAGA
ACAGCCCTTCATGTGGCACAGgtgcgtaggcaggcatggttgtgttggga
agggaaaatattgaggggggttccgatgagagtggcttggcgacggcggt
tgtatttgccttcaaatgaatgaggacgtgcgcacttttacgcgacatac
aacctgttttgaattggtttcgttgaaagggatatgtatacgtgatgtgt
acgaggagaaggggttgtgcgggtttcctgtcttcctgctcagatccctc
tccagacttgtcccgatggtatcgcgcctcgtagatgcctgcctctcgtt
ctgcccgacatcgcactcaacccacccttacactatctcattatttgctt
tcccatagtcatgcctaacgacatccacatcatttgcacccaaaacgtcg
acacactcatagccgcccaactttccttcctcccctaccctccctccgta
gATCCCAGTCCCCATGGACTGGAATGTCGCCGCCTGGCCAGACCTGCCCT
TTGTCAATGAAACAGCCATCAGCGGAAGAGACAAAGACATCCGTGCCGGC
TGGGCCAGGCTAAGTCAAATGGGTGTCACTCTCGGCCGTTCCCCCACCTC
CACACTCTCCACCACTGCCCGCGTCATCCTCTCTCCTTCCCATACCAAGA
AATCCTCCGCTGACCGGGCCGTGAGGCAAATTGTCGCTCAAGGACGGCTT
GGCAAAGCTGTGGATCTGCTAGTCTATCTAAGTGAAGAGGAAGATGGCCA
CCAAGCCATCGACCGCGCCCTTGTAAACTTTGTTCTATACAACTGCATGC
GTCGGAGGGACTGGACCCGGGCGCTCACGGTGCTGGACGCGCCGATGATC
GAGGTGGATATCGTGGGGTTCACCATGGCAATCAAGGCGTGTGGTCAAGC
CAGACGATGGAGGGAAGCGCTTGGCGTGCTCGGCGAGATGCAAGCACGAG
GACTACAGCCTGATTTGGTGACGTTCAACACCGCGATGGACGCGCTGGGG
AAGGCGGGGCAGTACGACAAGGCGCTCGATCTCTTCGCTGAGATTGAAAG
GCAAGGAATGGCGCCTAATCTGGTCAGCTACAATACAGCCATCCACGCGT
GTGGCCGGGCAGGCTCGGTGGAACGAGCGCGGGAGCTGTTGAGTGAGATG
CAGGCCAAGGGGAAGGGTGTACGTCCCGACTCTGTATCTTACAACACCGT
CATGGCAGCATTTGCCAAGAAAAATCAGTGGAAGACAGCTTTGGAACTCC
TCAGTGAGATGGAGACGGCACCAGGGGTGGAGCCTGACCTGATCTCTTAC
AACACTGCCATGCACGTGTGTGCGAAGGCTGGCAAATGGGAGAGGGCCAC
TGAGCTCCTGACTGAGGCATTAGGCCGGGGCCTTAAGCCGGATGTGGTGA
GCTATAACACGGTGATGCATGCGTGTGGGAGGGCAGGGGAGTACCTGCAG
GCACTGGATTTGTTTGGGATGATGGAGGAGGTGGGGGTGGTGCCCGATAG
GGTCAGCTTTAACACTGCCATGAATGCGTGTAATCGTGCGCTGAAATGGC
AGGCGGCATTGCAGATTTTAAGGGAGATGGAATCGAGAAACATCAAGGCG
AATGTGAAGAGCTACACGATTGCGGTGGATGCGTGTGGACGGGCGGGGGA
GTGGGAGCGGGCGTTGGAGCTGATGGAAGAGATGGAAGTGCGAGGGGTTC
CTGCAAATGTGCGCACGTACACGGCGGCCATGGATGCGTGTTGTAGGGGG
GGGGATGTGGATCGGGTCATGACTCTTTTGGAAGAGATGGATGGCAAGGG
GGTGGAGCCGAACGTTGTGAGTTACACGATAGCCATGGACGCAATGAACA
GGGTGGGGAGGTGGGAGAAAGCCTCGGCGGTGCTTGAGCAGATGGTGCAA
CGAGGGTTGAAGTTCGACTCAGTGTCATACCGCACGGCCTTATCCACGGC
GGGGAGGGCGACAGGGGAGGGGGAGAGAGATCGGCTGGTAAAGCTGCTGG
AGGGGAGCAGGCCGGTGCACGATCACAGAGAGCAAGAAGGGCAGCAGCAG
CAGCAGCAGCTGGAGACGATGATGGCGGAGGAGGGGGAGGGTTGGGAGGG
GGAGGAGATGAGGGGTGGTGGAGTGGGTGGGTGGCAGCAACAGAGAGAAG
AGGAGAAGAGGGCTAGTGGAAGCAGTACCCTCTGGGGGCTATAGCGTTTA
TTCATGTGTTCAGCGTCGCTTTAATCGAATATTTGTGTGTCTGTTATATC
TTTCTGTGTCTGTGCCTGTAGCTGTGTTGTACATGCTGTGGGTGGGTGTA
GGTGGGGATGTGTGGTTGCTGTTGCCTCTCTCCCTGTAAGGAAGGTAACT
TCTGATTAGAGACTATTTACGATTGCGGAGGAGAGGAGATCCGCAGTCAT
CACCGCAACAGCGGCACCACCAACTTGTAGGAATAGACGTGCGTGCCGAA
GAGAGAGAGAGAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGGGGGGGGGGGAAAGAAAGAGAGAGAGGGGGAGAGAAAAGTCAAAAGC
TATGTCTTGTCTCCGCTTTCCTTTTTTAATAAGTGGCTCTCACTTTTATT
AAACAACGACACATCAAGCAACAAACGATTTGGCAAGATGAGACGTCGGT
CAATTGTGGTAATTCTAGCGAGAGATAGAATGACAGGTGAATGAAGAAAA
CAGAGTAAATCATCGCGTAGAAGAG back to topprotein sequence of NO18G01120.1 >NO18G01120.1-protein ID=NO18G01120.1-protein|Name=NO18G01120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=667bp
MTTASTSTTPQDLQYTSSTPRGSGRIRRLAGLCCLASCTSTVHAFMGPAA
AKATPVATRPSTFRFLPSSSPSTPATASRTALHVAQIPVPMDWNVAAWPD
LPFVNETAISGRDKDIRAGWARLSQMGVTLGRSPTSTLSTTARVILSPSH
TKKSSADRAVRQIVAQGRLGKAVDLLVYLSEEEDGHQAIDRALVNFVLYN
CMRRRDWTRALTVLDAPMIEVDIVGFTMAIKACGQARRWREALGVLGEMQ
ARGLQPDLVTFNTAMDALGKAGQYDKALDLFAEIERQGMAPNLVSYNTAI
HACGRAGSVERARELLSEMQAKGKGVRPDSVSYNTVMAAFAKKNQWKTAL
ELLSEMETAPGVEPDLISYNTAMHVCAKAGKWERATELLTEALGRGLKPD
VVSYNTVMHACGRAGEYLQALDLFGMMEEVGVVPDRVSFNTAMNACNRAL
KWQAALQILREMESRNIKANVKSYTIAVDACGRAGEWERALELMEEMEVR
GVPANVRTYTAAMDACCRGGDVDRVMTLLEEMDGKGVEPNVVSYTIAMDA
MNRVGRWEKASAVLEQMVQRGLKFDSVSYRTALSTAGRATGEGERDRLVK
LLEGSRPVHDHREQEGQQQQQQLETMMAEEGEGWEGEEMRGGGVGGWQQQ
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