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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr18 | genome | chr18:384490..385967 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO18G01090.1 vs.
Match: EWM23322.1 (Kinase phosphorylation domain protein [Nannochloropsis gaditana]) HSP 1 Score: 260.4 bits (664), Expect = 8.300e-66 Identity = 174/297 (58.59%), Postives = 207/297 (69.70%), Query Frame = 0
Query: 1 MSFGPKTGYRDGGNRGGQDRFKWEDVKDEHYREHYLGHSLKAPVGRWQKGKDLMWYTKADKGGEKGKEDAEAQRRRELAEFRRRDEDMINAALGLAPARQAVVETTLDASELKQLLARGASERGDMDAERVEGLGAAPAARHEHLPKGKSMVEREIERMKKEQAEGRGFEYEEDASHMHEEEGNDVVKDGGGKRKKNRDEDKEKKEKKK------RKKEEKKKEEKKKKKVVKKERKKAKKAMRKEE---------DDEGAGREGGRGQGRSERGRSSSDNSCRSSSAGPEHRMRHV 283
MSFGPKTGYRDGG RGGQDRFKWEDVKDEHYREHYLGHSLKAPVGRWQKGKDLMWYTKA K ED EAQR+RE+AE R+RDE+MINAALG+AP QAVVE+ L+ASELKQLL +G SER D+ ERVEG+GAAPA RHEHLPKG SMVEREIERMK QA+G F+YE+DA+H++ E+ + GG N+ +D K+E K R++++ KKEEK++KK K+ERK+ KK RKE+ R G+ RS + + RS S R R V
Sbjct: 35 MSFGPKTGYRDGGTRGGQDRFKWEDVKDEHYREHYLGHSLKAPVGRWQKGKDLMWYTKAGKVKSGEAEDPEAQRQREVAEIRQRDEEMINAALGMAPKYQAVVESRLEASELKQLLGKGLSERDDLHGERVEGVGAAPAPRHEHLPKGLSMVEREIERMKSAQAQGVAFKYEDDATHLYAEQ---EAEGGGHTHAGNKRKDSSKRESLKDYGGSTREEKKLKKEEKRRKKEEKRERKQDKKRQRKEKILAVAEEAMPSRHTSRPARNGRSRSPDQKHRRQDGGRSCSPAHGSRGRRV 328
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO18G01090.1 ID=NO18G01090.1|Name=NO18G01090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1352bp AGCTAGCTGGACTGAATCAAGGACAGCAAGCATGTCGTTCGGGCCGAAAA CGGGCTACCGCGACGGCGGCAATAGAGGCGGACAGGACCGATTCAAGTGG GAGGATGTGAAAGACGAACACTACCGTGAGCATTATTTGGGACACAGCCT CAAGGCCCCCGTCGGACGCTGGCAGAAAGGCAAAGACCTAATGTGGTACA CCAAAGCAGACAAAGGAGGGGAGAAAGGGAAAGAGGATGCGGAGGCGCAA CGACGGAGGGAGTTAGCGGAGTTTCGACGACGGGACGAAGACATGATTAA TGCTGCCTTGGGGTTGGCACCGGCACGTCAGGCAGTAGTAGAGACTACAC TCGATGCAAGTGAGCTGAAACAGCTGCTGGCAAGGGGGGCGAGCGAGAGG GGGGATATGGATGCAGAGCGCGTGGAGGGTCTCGGAGCAGCGCCTGCAGC GAGGCACGAGCACTTGCCCAAGGGAAAGAGTATGGTTGAGCGAGAGATTG AAAGGATGAAGAAAGAACAGGCGGAGGGGAGAGGTTTTGAATACGAGGAG GATGCGAGTCATATGCATGAGGAAGAAGGGAACGATGTGGTGAAGGACGG AGGGGGAAAGAGGAAGAAGAATAGAGATGAAGACAAGGAGAAGAAGGAGA AGAAAAAGAGGAAGAAGGAGGAAAAGAAAAAGGAGGAAAAGAAGAAAAAG AAGGTGGTGAAAAAGGAGCGAAAGAAGGCAAAGAAAGCGATGCGCAAGGA AGAAGATGATGAGGGGGCAGGAAGGGAGGGAGGTCGTGGCCAAGGACGCT CCGAGAGGGGTCGAAGCTCGAGCGACAACAGCTGCAGGAGCAGCAGCGCC GGCCCCGAGCATCGCATGCGACACGTATCGATAGACAAAACTCACCATGA TGGTGCAGAGGAGAGGCAGAGGGAGGCGGGGCGCTGTGGGGGAAAACGCC CTGAAAGAGAGAGAGGCCGAAGCGCCAGCCGCAGCAGTAGGAGCGCCAGT CCCGATGACCGGAAGCGACGGCGACTACGGACAGAGAGCATATCACGCTC CAGGTCCAGACCTCGTAATTCTTATGTCCGTGAGCAGGGCCGCCGCCGCG GGAGATAATCATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGCAAGGGGGTCAAGAGAAAAAAATGGCAAGTA AATGGAAGGAAACCTGTACAAAGAAAGCCGCGAAACGTTAACGGGAGAAC GTGAACAATTCTCCGAGAAAGAAGGGCAAAAAGGAAGAAGAACGGCACAT GCACGACCCAGCCATTCAATGTGTCGTGGGAACTCTCTGACCATTACATT TC back to topprotein sequence of NO18G01090.1 >NO18G01090.1-protein ID=NO18G01090.1-protein|Name=NO18G01090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp MSFGPKTGYRDGGNRGGQDRFKWEDVKDEHYREHYLGHSLKAPVGRWQKG KDLMWYTKADKGGEKGKEDAEAQRRRELAEFRRRDEDMINAALGLAPARQ AVVETTLDASELKQLLARGASERGDMDAERVEGLGAAPAARHEHLPKGKS MVEREIERMKKEQAEGRGFEYEEDASHMHEEEGNDVVKDGGGKRKKNRDE DKEKKEKKKRKKEEKKKEEKKKKKVVKKERKKAKKAMRKEEDDEGAGREG GRGQGRSERGRSSSDNSCRSSSAGPEHRMRHVSIDKTHHDGAEERQREAG RCGGKRPERERGRSASRSSRSASPDDRKRRRLRTESISRSRSRPRNSYVR EQGRRRGR* back to topmRNA from alignment at chr18:384490..385967+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO18G01090.1 ID=NO18G01090.1|Name=NO18G01090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1478bp|location=Sequence derived from alignment at chr18:384490..385967+ (Nannochloropsis oceanica) AGCTAGCTGGACTGAATCAAGGACAGCAAGCATGTCGTTCGGGCCGAAAA
CGGGCTACCGCGACGGCGGCAATAGAGGCGGACAGGACCGATTCAAGTGG
GAGGATGTGAAAGACGGTAGGCGTGGTGCTTGATTGGGTGGGTGGGGTGA
GGAATGATCAGCATGGACATGACTCATATCTCTATTTTCCTCCTTGCCCG
TTCTCCTTCCCTCCTTCCCCGCTCCTTCCAACCCCTTCGTAGAACACTAC
CGTGAGCATTATTTGGGACACAGCCTCAAGGCCCCCGTCGGACGCTGGCA
GAAAGGCAAAGACCTAATGTGGTACACCAAAGCAGACAAAGGAGGGGAGA
AAGGGAAAGAGGATGCGGAGGCGCAACGACGGAGGGAGTTAGCGGAGTTT
CGACGACGGGACGAAGACATGATTAATGCTGCCTTGGGGTTGGCACCGGC
ACGTCAGGCAGTAGTAGAGACTACACTCGATGCAAGTGAGCTGAAACAGC
TGCTGGCAAGGGGGGCGAGCGAGAGGGGGGATATGGATGCAGAGCGCGTG
GAGGGTCTCGGAGCAGCGCCTGCAGCGAGGCACGAGCACTTGCCCAAGGG
AAAGAGTATGGTTGAGCGAGAGATTGAAAGGATGAAGAAAGAACAGGCGG
AGGGGAGAGGTTTTGAATACGAGGAGGATGCGAGTCATATGCATGAGGAA
GAAGGGAACGATGTGGTGAAGGACGGAGGGGGAAAGAGGAAGAAGAATAG
AGATGAAGACAAGGAGAAGAAGGAGAAGAAAAAGAGGAAGAAGGAGGAAA
AGAAAAAGGAGGAAAAGAAGAAAAAGAAGGTGGTGAAAAAGGAGCGAAAG
AAGGCAAAGAAAGCGATGCGCAAGGAAGAAGATGATGAGGGGGCAGGAAG
GGAGGGAGGTCGTGGCCAAGGACGCTCCGAGAGGGGTCGAAGCTCGAGCG
ACAACAGCTGCAGGAGCAGCAGCGCCGGCCCCGAGCATCGCATGCGACAC
GTATCGATAGACAAAACTCACCATGATGGTGCAGAGGAGAGGCAGAGGGA
GGCGGGGCGCTGTGGGGGAAAACGCCCTGAAAGAGAGAGAGGCCGAAGCG
CCAGCCGCAGCAGTAGGAGCGCCAGTCCCGATGACCGGAAGCGACGGCGA
CTACGGACAGAGAGCATATCACGCTCCAGGTCCAGACCTCGTAATTCTTA
TGTCCGTGAGCAGGGCCGCCGCCGCGGGAGATAATCATGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCAAGG
GGGTCAAGAGAAAAAAATGGCAAGTAAATGGAAGGAAACCTGTACAAAGA
AAGCCGCGAAACGTTAACGGGAGAACGTGAACAATTCTCCGAGAAAGAAG
GGCAAAAAGGAAGAAGAACGGCACATGCACGACCCAGCCATTCAATGTGT
CGTGGGAACTCTCTGACCATTACATTTC back to topCoding sequence (CDS) from alignment at chr18:384490..385967+ >NO18G01090.1 ID=NO18G01090.1|Name=NO18G01090.1|organism=Nannochloropsis oceanica|type=CDS|length=1077bp|location=Sequence derived from alignment at chr18:384490..385967+ (Nannochloropsis oceanica) ATGTCGTTCGGGCCGAAAACGGGCTACCGCGACGGCGGCAATAGAGGCGG ACAGGACCGATTCAAGTGGGAGGATGTGAAAGACGAACACTACCGTGAGC ATTATTTGGGACACAGCCTCAAGGCCCCCGTCGGACGCTGGCAGAAAGGC AAAGACCTAATGTGGTACACCAAAGCAGACAAAGGAGGGGAGAAAGGGAA AGAGGATGCGGAGGCGCAACGACGGAGGGAGTTAGCGGAGTTTCGACGAC GGGACGAAGACATGATTAATGCTGCCTTGGGGTTGGCACCGGCACGTCAG GCAGTAGTAGAGACTACACTCGATGCAAGTGAGCTGAAACAGCTGCTGGC AAGGGGGGCGAGCGAGAGGGGGGATATGGATGCAGAGCGCGTGGAGGGTC TCGGAGCAGCGCCTGCAGCGAGGCACGAGCACTTGCCCAAGGGAAAGAGT ATGGTTGAGCGAGAGATTGAAAGGATGAAGAAAGAACAGGCGGAGGGGAG AGGTTTTGAATACGAGGAGGATGCGAGTCATATGCATGAGGAAGAAGGGA ACGATGTGGTGAAGGACGGAGGGGGAAAGAGGAAGAAGAATAGAGATGAA GACAAGGAGAAGAAGGAGAAGAAAAAGAGGAAGAAGGAGGAAAAGAAAAA GGAGGAAAAGAAGAAAAAGAAGGTGGTGAAAAAGGAGCGAAAGAAGGCAA AGAAAGCGATGCGCAAGGAAGAAGATGATGAGGGGGCAGGAAGGGAGGGA GGTCGTGGCCAAGGACGCTCCGAGAGGGGTCGAAGCTCGAGCGACAACAG CTGCAGGAGCAGCAGCGCCGGCCCCGAGCATCGCATGCGACACGTATCGA TAGACAAAACTCACCATGATGGTGCAGAGGAGAGGCAGAGGGAGGCGGGG CGCTGTGGGGGAAAACGCCCTGAAAGAGAGAGAGGCCGAAGCGCCAGCCG CAGCAGTAGGAGCGCCAGTCCCGATGACCGGAAGCGACGGCGACTACGGA CAGAGAGCATATCACGCTCCAGGTCCAGACCTCGTAATTCTTATGTCCGT GAGCAGGGCCGCCGCCGCGGGAGATAA back to top
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