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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr18 | genome | chr18:381920..383948 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO18G01080.1 vs.
Match: EWM23329.1 (uncharacterized protein Naga_100053g25 [Nannochloropsis gaditana]) HSP 1 Score: 717.6 bits (1851), Expect = 3.000e-203 Identity = 395/551 (71.69%), Postives = 441/551 (80.04%), Query Frame = 0
Query: 8 RRLALQH--SSPCRRPHLLPAPPPLLRLPHRLAASSSTPPTPPSSTDKLVAKQIMTDRAGYRETLYYAAVPSSSMAEKSKDKETEESTTTSSTTNSKAYHRIDPPPEVLSLRLLAEDGLRALLPRGYPRSVQKGYAEYVKLQMTASLASSAIGVLSTQSLLYAMGLGAGAIPLAAALNWIIKDGIGQVGGIIFASVVNDRFDANPKRWKMVATISLDLSCALELLAPLAPGSFLAIASLANVGKNVCFLSASASRAAIHNSFAKRENLADITAKAGSQFIVTSILGTGLGIALSTALGSSWMALAPICAGLSFVHISCNYLSLRHVCLNTINAERMELIMQHYVLTGRIPAPGDISPIERFMTPAIYDTVAPSALVARLPSLRMGRHLDEVASLEQLPRLARLFEKEKYVLNAKGRRGDGTATVDVLMKEEANVHDVLKACVHSYYVRKEAGREGGWKAPRVQSAWARLMEKKEVERSDTWLIDLVESTHKTLYRPSSGAGGAREGGREDGRGKHLTMVDDIVGQLTRAGWLTDSVFFPHTQNRISFEGGA 557
R LA QH S R+ HLL APPP RL R ASSS+PP + +KL+AKQIMT RAG RETLYYAA+ S S SKDK + YHR+DPPPE+LS RL+ ED LRALLPRGYPRSVQKGY EYVKLQMTASLASSA+GVLSTQSLLYAMGLGAGAIPLAAALNWIIKDGIGQVGGI+FASVVNDRFDANPKRWKMVATISLDLSC LELLAPLAP FLAIASLANVGKNVCFLSASASRAAIHNSFAKRENLADITAKAGSQFIVTSILGTGLGIALSTALGSSWMALAPICAGLSF+HISCNYLSLRHVCLNT+NAER EL++ + GRIP PG++S E FM PAIYDTVAPSAL + LP LRMGR L EVAS QL RLARLF ++ Y+LNA+GR DGTATVDVLMKE+A+V DVL+AC+H+YYVR+EA GWKAP SAW ++ ++ E +TWL++LVE TH+ L +P + G E + +T VDDIVGQ+ +AGWL DSVFFPHTQNR++FEG A
Sbjct: 13 RILASQHGVSGLGRKHHLLKAPPP--RLVLRWTASSSSPPKAHVTNEKLMAKQIMTARAGCRETLYYAALQSDS----SKDKV-------------QIYHRVDPPPEILSPRLVLEDALRALLPRGYPRSVQKGYVEYVKLQMTASLASSAVGVLSTQSLLYAMGLGAGAIPLAAALNWIIKDGIGQVGGIVFASVVNDRFDANPKRWKMVATISLDLSCGLELLAPLAPAYFLAIASLANVGKNVCFLSASASRAAIHNSFAKRENLADITAKAGSQFIVTSILGTGLGIALSTALGSSWMALAPICAGLSFIHISCNYLSLRHVCLNTLNAERAELVLDRFWSQGRIPHPGEVSGEECFMWPAIYDTVAPSALKSGLPILRMGRPLHEVASPRQLVRLARLFARDGYLLNARGRARDGTATVDVLMKEDASVEDVLRACIHAYYVRREASAR-GWKAPPPPSAWTQMTGRRTEEGLETWLLELVEETHRALQQPVVHSPGPSE-------EETITRVDDIVGQVKQAGWLIDSVFFPHTQNRVAFEGVA 536
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO18G01080.1 ID=NO18G01080.1|Name=NO18G01080.1|organism=Nannochloropsis oceanica|type=mRNA|length=2029bp ATGCTGGGAGGAACGCGGCTGCGGCGTCTAGCCCTGCAGCACAGCAGTCC GTGTCGCAGGCCACATCTTTTGCCAGCACCCCCACCTCTCCTTCGCCTCC CGCATCGTTTGGCTGCCTCCTCGTCCACCCCACCCACTCCCCCTTCCTCC ACCGACAAGCTTGTGGCCAAGCAAATCATGACAGACCGGGCAGGCTACCG TGAGACGCTGTACTATGCGGCCGTGCCCTCGTCTTCGATGGCCGAGAAAT CCAAAGACAAGGAAACGGAGGAGAGCACCACCACTAGCAGCACCACAAAT AGCAAGGCATATCACCGTATCGACCCTCCCCCCGAAGTCCTTTCCCTCCG CCTTCTGGCCGAAGACGGCCTCCGCGCCTTGCTTCCAAGAGGCTACCCAC GCTCGGTCCAAAAAGGGTACGCAGAATATGTCAAACTTCAAATGACAGCT TCCCTGGCCAGCTCCGCCATTGGTGTGCTCTCCACTCAATCCCTCCTCTA CGCCATGGGCCTGGGCGCCGGCGCCATCCCCCTCGCCGCGGCCCTTAACT GGATCATAAAAGACGGGATCGGACAAGTCGGCGGCATCATATTCGCCAGT GTCGTGAACGACCGATTCGACGCGAATCCCAAACGCTGGAAAATGGTCGC CACGATTTCCCTTGACCTCTCCTGCGCACTCGAGCTCCTTGCGCCTCTCG CCCCAGGGTCCTTCCTCGCCATCGCCTCCCTCGCCAACGTCGGCAAAAAC GTATGTTTCCTCTCCGCCTCCGCCTCGCGCGCGGCCATCCACAACTCCTT CGCCAAACGGGAGAATCTCGCCGACATCACCGCAAAAGCTGGTTCTCAAT TCATAGTCACTTCAATCCTCGGCACTGGTCTGGGTATCGCCCTCTCCACC GCACTAGGCTCTTCCTGGATGGCGCTCGCTCCCATCTGTGCAGGGCTGTC TTTTGTCCACATTTCTTGTAACTACCTATCCCTACGCCACGTTTGCCTCA ACACAATCAACGCCGAGAGGATGGAGTTGATCATGCAGCACTACGTCCTC ACAGGCCGCATCCCCGCCCCGGGCGACATATCTCCAATCGAACGGTTTAT GACCCCCGCCATCTATGACACAGTGGCCCCTTCCGCATTAGTGGCGCGCT TGCCTTCCTTGAGGATGGGGAGGCACTTAGACGAGGTGGCAAGCCTTGAG CAGCTGCCAAGGTTGGCCCGGTTGTTCGAAAAGGAGAAATATGTTTTGAA TGCGAAGGGAAGGAGGGGGGATGGGACGGCGACCGTTGATGTGTTGATGA AGGAAGAGGCAAATGTCCACGACGTGTTGAAGGCGTGCGTGCATTCGTAC TACGTCAGAAAGGAGGCAGGGAGGGAGGGAGGGTGGAAGGCCCCTCGGGT GCAGTCGGCGTGGGCGAGGTTGATGGAGAAGAAGGAGGTGGAACGGTCAG ATACGTGGCTCATTGACCTCGTGGAAAGCACGCATAAAACATTGTACCGA CCATCGTCGGGGGCTGGAGGGGCAAGGGAGGGAGGGAGGGAGGATGGGAG GGGGAAGCATTTGACTATGGTGGATGATATTGTGGGGCAGTTGACGCGGG CTGGGTGGTTGACGGACAGTGTGTTTTTCCCACATACCCAAAATAGGATT AGCTTTGAAGGGGGCGCGATTCAAGGAGTGCCCTTGTCGTCATCTGACAG CAATAAAAAGGGAGCATGAAGGTGTAAGAATGTCGGATAGTGGGGCAGTG GACGGGTAGTGGTAGTGTCGTGTTGTCTGCAATCACCTTCGGGTTCGACG GGGCCTCCATCTCGATGTCGATTTAAGAGAAGGGTGAGGGGGAAGAAAGC ACAAGCCACTCAAGTGTGTCAATAGGTCGATAAAGGAATGTGTAAAAGTA GACGGAGGTGGCGAGAGTCGTCGAGCACAAGCGCACGCATGGCGCATCTG GACACGAGGCAATAAACGCATCTTTAAAAAGATTAGCATCAATAGGCGAC AGATTCCCAAAATCCATTTCACTTTGTAT back to topprotein sequence of NO18G01080.1 >NO18G01080.1-protein ID=NO18G01080.1-protein|Name=NO18G01080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=573bp MLGGTRLRRLALQHSSPCRRPHLLPAPPPLLRLPHRLAASSSTPPTPPSS TDKLVAKQIMTDRAGYRETLYYAAVPSSSMAEKSKDKETEESTTTSSTTN SKAYHRIDPPPEVLSLRLLAEDGLRALLPRGYPRSVQKGYAEYVKLQMTA SLASSAIGVLSTQSLLYAMGLGAGAIPLAAALNWIIKDGIGQVGGIIFAS VVNDRFDANPKRWKMVATISLDLSCALELLAPLAPGSFLAIASLANVGKN VCFLSASASRAAIHNSFAKRENLADITAKAGSQFIVTSILGTGLGIALST ALGSSWMALAPICAGLSFVHISCNYLSLRHVCLNTINAERMELIMQHYVL TGRIPAPGDISPIERFMTPAIYDTVAPSALVARLPSLRMGRHLDEVASLE QLPRLARLFEKEKYVLNAKGRRGDGTATVDVLMKEEANVHDVLKACVHSY YVRKEAGREGGWKAPRVQSAWARLMEKKEVERSDTWLIDLVESTHKTLYR PSSGAGGAREGGREDGRGKHLTMVDDIVGQLTRAGWLTDSVFFPHTQNRI SFEGGAIQGVPLSSSDSNKKGA* back to topmRNA from alignment at chr18:381920..383948- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO18G01080.1 ID=NO18G01080.1|Name=NO18G01080.1|organism=Nannochloropsis oceanica|type=mRNA|length=2029bp|location=Sequence derived from alignment at chr18:381920..383948- (Nannochloropsis oceanica) ATGCTGGGAGGAACGCGGCTGCGGCGTCTAGCCCTGCAGCACAGCAGTCC
GTGTCGCAGGCCACATCTTTTGCCAGCACCCCCACCTCTCCTTCGCCTCC
CGCATCGTTTGGCTGCCTCCTCGTCCACCCCACCCACTCCCCCTTCCTCC
ACCGACAAGCTTGTGGCCAAGCAAATCATGACAGACCGGGCAGGCTACCG
TGAGACGCTGTACTATGCGGCCGTGCCCTCGTCTTCGATGGCCGAGAAAT
CCAAAGACAAGGAAACGGAGGAGAGCACCACCACTAGCAGCACCACAAAT
AGCAAGGCATATCACCGTATCGACCCTCCCCCCGAAGTCCTTTCCCTCCG
CCTTCTGGCCGAAGACGGCCTCCGCGCCTTGCTTCCAAGAGGCTACCCAC
GCTCGGTCCAAAAAGGGTACGCAGAATATGTCAAACTTCAAATGACAGCT
TCCCTGGCCAGCTCCGCCATTGGTGTGCTCTCCACTCAATCCCTCCTCTA
CGCCATGGGCCTGGGCGCCGGCGCCATCCCCCTCGCCGCGGCCCTTAACT
GGATCATAAAAGACGGGATCGGACAAGTCGGCGGCATCATATTCGCCAGT
GTCGTGAACGACCGATTCGACGCGAATCCCAAACGCTGGAAAATGGTCGC
CACGATTTCCCTTGACCTCTCCTGCGCACTCGAGCTCCTTGCGCCTCTCG
CCCCAGGGTCCTTCCTCGCCATCGCCTCCCTCGCCAACGTCGGCAAAAAC
GTATGTTTCCTCTCCGCCTCCGCCTCGCGCGCGGCCATCCACAACTCCTT
CGCCAAACGGGAGAATCTCGCCGACATCACCGCAAAAGCTGGTTCTCAAT
TCATAGTCACTTCAATCCTCGGCACTGGTCTGGGTATCGCCCTCTCCACC
GCACTAGGCTCTTCCTGGATGGCGCTCGCTCCCATCTGTGCAGGGCTGTC
TTTTGTCCACATTTCTTGTAACTACCTATCCCTACGCCACGTTTGCCTCA
ACACAATCAACGCCGAGAGGATGGAGTTGATCATGCAGCACTACGTCCTC
ACAGGCCGCATCCCCGCCCCGGGCGACATATCTCCAATCGAACGGTTTAT
GACCCCCGCCATCTATGACACAGTGGCCCCTTCCGCATTAGTGGCGCGCT
TGCCTTCCTTGAGGATGGGGAGGCACTTAGACGAGGTGGCAAGCCTTGAG
CAGCTGCCAAGGTTGGCCCGGTTGTTCGAAAAGGAGAAATATGTTTTGAA
TGCGAAGGGAAGGAGGGGGGATGGGACGGCGACCGTTGATGTGTTGATGA
AGGAAGAGGCAAATGTCCACGACGTGTTGAAGGCGTGCGTGCATTCGTAC
TACGTCAGAAAGGAGGCAGGGAGGGAGGGAGGGTGGAAGGCCCCTCGGGT
GCAGTCGGCGTGGGCGAGGTTGATGGAGAAGAAGGAGGTGGAACGGTCAG
ATACGTGGCTCATTGACCTCGTGGAAAGCACGCATAAAACATTGTACCGA
CCATCGTCGGGGGCTGGAGGGGCAAGGGAGGGAGGGAGGGAGGATGGGAG
GGGGAAGCATTTGACTATGGTGGATGATATTGTGGGGCAGTTGACGCGGG
CTGGGTGGTTGACGGACAGTGTGTTTTTCCCACATACCCAAAATAGGATT
AGCTTTGAAGGGGGCGCGATTCAAGGAGTGCCCTTGTCGTCATCTGACAG
CAATAAAAAGGGAGCATGAAGGTGTAAGAATGTCGGATAGTGGGGCAGTG
GACGGGTAGTGGTAGTGTCGTGTTGTCTGCAATCACCTTCGGGTTCGACG
GGGCCTCCATCTCGATGTCGATTTAAGAGAAGGGTGAGGGGGAAGAAAGC
ACAAGCCACTCAAGTGTGTCAATAGGTCGATAAAGGAATGTGTAAAAGTA
GACGGAGGTGGCGAGAGTCGTCGAGCACAAGCGCACGCATGGCGCATCTG
GACACGAGGCAATAAACGCATCTTTAAAAAGATTAGCATCAATAGGCGAC
AGATTCCCAAAATCCATTTCACTTTGTAT back to topCoding sequence (CDS) from alignment at chr18:381920..383948- >NO18G01080.1 ID=NO18G01080.1|Name=NO18G01080.1|organism=Nannochloropsis oceanica|type=CDS|length=1719bp|location=Sequence derived from alignment at chr18:381920..383948- (Nannochloropsis oceanica) ATGCTGGGAGGAACGCGGCTGCGGCGTCTAGCCCTGCAGCACAGCAGTCC GTGTCGCAGGCCACATCTTTTGCCAGCACCCCCACCTCTCCTTCGCCTCC CGCATCGTTTGGCTGCCTCCTCGTCCACCCCACCCACTCCCCCTTCCTCC ACCGACAAGCTTGTGGCCAAGCAAATCATGACAGACCGGGCAGGCTACCG TGAGACGCTGTACTATGCGGCCGTGCCCTCGTCTTCGATGGCCGAGAAAT CCAAAGACAAGGAAACGGAGGAGAGCACCACCACTAGCAGCACCACAAAT AGCAAGGCATATCACCGTATCGACCCTCCCCCCGAAGTCCTTTCCCTCCG CCTTCTGGCCGAAGACGGCCTCCGCGCCTTGCTTCCAAGAGGCTACCCAC GCTCGGTCCAAAAAGGGTACGCAGAATATGTCAAACTTCAAATGACAGCT TCCCTGGCCAGCTCCGCCATTGGTGTGCTCTCCACTCAATCCCTCCTCTA CGCCATGGGCCTGGGCGCCGGCGCCATCCCCCTCGCCGCGGCCCTTAACT GGATCATAAAAGACGGGATCGGACAAGTCGGCGGCATCATATTCGCCAGT GTCGTGAACGACCGATTCGACGCGAATCCCAAACGCTGGAAAATGGTCGC CACGATTTCCCTTGACCTCTCCTGCGCACTCGAGCTCCTTGCGCCTCTCG CCCCAGGGTCCTTCCTCGCCATCGCCTCCCTCGCCAACGTCGGCAAAAAC GTATGTTTCCTCTCCGCCTCCGCCTCGCGCGCGGCCATCCACAACTCCTT CGCCAAACGGGAGAATCTCGCCGACATCACCGCAAAAGCTGGTTCTCAAT TCATAGTCACTTCAATCCTCGGCACTGGTCTGGGTATCGCCCTCTCCACC GCACTAGGCTCTTCCTGGATGGCGCTCGCTCCCATCTGTGCAGGGCTGTC TTTTGTCCACATTTCTTGTAACTACCTATCCCTACGCCACGTTTGCCTCA ACACAATCAACGCCGAGAGGATGGAGTTGATCATGCAGCACTACGTCCTC ACAGGCCGCATCCCCGCCCCGGGCGACATATCTCCAATCGAACGGTTTAT GACCCCCGCCATCTATGACACAGTGGCCCCTTCCGCATTAGTGGCGCGCT TGCCTTCCTTGAGGATGGGGAGGCACTTAGACGAGGTGGCAAGCCTTGAG CAGCTGCCAAGGTTGGCCCGGTTGTTCGAAAAGGAGAAATATGTTTTGAA TGCGAAGGGAAGGAGGGGGGATGGGACGGCGACCGTTGATGTGTTGATGA AGGAAGAGGCAAATGTCCACGACGTGTTGAAGGCGTGCGTGCATTCGTAC TACGTCAGAAAGGAGGCAGGGAGGGAGGGAGGGTGGAAGGCCCCTCGGGT GCAGTCGGCGTGGGCGAGGTTGATGGAGAAGAAGGAGGTGGAACGGTCAG ATACGTGGCTCATTGACCTCGTGGAAAGCACGCATAAAACATTGTACCGA CCATCGTCGGGGGCTGGAGGGGCAAGGGAGGGAGGGAGGGAGGATGGGAG GGGGAAGCATTTGACTATGGTGGATGATATTGTGGGGCAGTTGACGCGGG CTGGGTGGTTGACGGACAGTGTGTTTTTCCCACATACCCAAAATAGGATT AGCTTTGAAGGGGGCGCGATTCAAGGAGTGCCCTTGTCGTCATCTGACAG CAATAAAAAGGGAGCATGA back to top
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