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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr18 | genome | chr18:375411..377615 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO18G01060.1 vs.
Match: EWM23333.1 (Zinc finger, CCCH-type [Nannochloropsis gaditana]) HSP 1 Score: 625.2 bits (1611), Expect = 2.600e-175 Identity = 361/583 (61.92%), Postives = 414/583 (71.01%), Query Frame = 0
Query: 189 RPPTSAPPTQQQQQQQQQQQQQQQQQKKKQFPAGPATNATPVTIGNKKNNTSNTK--------------------PPPVAKTIVPAPIAAAV---APIERRPAARVTAAALTNNKPAN-------------GNGVGMLGKISALPVTPFTITHNHKMEMKQEEVEVEDGEVVEEGGGVEEEQHFKEEIEEEKPVGAVAKKVKKQQQLQQQRQEEVVMEEEVCVHGESNWSCCVKATLDHARFEPNYRVVASKTKGEGEWIAAKKHGAWCKDLPHVLALDCEMCATRDPVSMEQDGKALIRLSVVSGHDENQVLLDTLVLPSLPVVDYRTDIHGIRPEDLRSVMFTFRHAQAAMLHLCCTETVLVGHGLANDLTALKMKHSKVVDTALLFEREDAPNHTPALKDVAGALLGLDMPDMHDSVADAQVTLRIARHFLEQGPVAPVPRLPAASNKKGRRAEAQQSCLLLHRIPLYVKAEHILEMFQSRTHVMPVAVDPVVATG-DGSLGRATARFLSKHHADLAFSTLTGPARPDKDGRPQKRVHLAGKKDYVQVRLMYAPGKEEGEEGGEGVVKEDATSSPPAKIF 735
R P T + ++ +++ + K GP T VT ++KNN ++T PPP A + + P+AAA AP+ R +AL+ + P GNGV ML K+SALPVTPFTI + ++ E EDGE+V+ G G E E + VGA + K++ Q + ++EEVC H S W+ CVKAT++HARFE NYR +A++ KGE +WI AKKHGAWC+DLPHVLALDCEMCATRDPVSMEQDGKALIRLSVV GHDE QVLLDTLVLPSLPV+DYRTDIHGIRPEDLR VMFTFRHAQAAMLHLCCTETVL+GHGL NDLTALKMKHS+VVDTALLFEREDAPNHTPALKDVA ALLGLDM DMHDSVADAQVTLRIARHFL++GPVAPVPRLPAA NKKGRRAEA QSCLLLHRIP +V A HI +MFQ+RTHV PV VDPV +G +GSLGRATARFLSK HADLAF+TLTGPARPDKDGR QKRVHLAGKKDYVQVRLMYAPG E G EG +G E+ P AK+F
Sbjct: 106 RSKKQEPETDESTSTEEAEEEGLPRAVKAAVHIGP----TSVTAVSRKNNIASTGKPTAEPCVGHDVTNPFLAVVPPPPATSHLRQPVAAAAKRGAPVHSVQKKRGDFSALSVSVPVQPSQSASSPASPRVGNGVSMLSKLSALPVTPFTIARKPNGATRDDD-EPEDGELVQ-GEGEEGED------SAQSVVGANLSQHAKEESCQAE-----AVKEEVCFHAGSPWTGCVKATMEHARFEANYRALAAQKKGEADWIEAKKHGAWCRDLPHVLALDCEMCATRDPVSMEQDGKALIRLSVVCGHDEKQVLLDTLVLPSLPVIDYRTDIHGIRPEDLRQVMFTFRHAQAAMLHLCCTETVLIGHGLCNDLTALKMKHSRVVDTALLFEREDAPNHTPALKDVASALLGLDMADMHDSVADAQVTLRIARHFLDRGPVAPVPRLPAAPNKKGRRAEAVQSCLLLHRIPSFVTAAHIKDMFQTRTHVAPVTVDPVATSGAEGSLGRATARFLSKGHADLAFATLTGPARPDKDGRLQKRVHLAGKKDYVQVRLMYAPG-EAGHEGRDG---EEEPDLPSAKVF 667
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO18G01060.1 ID=NO18G01060.1|Name=NO18G01060.1|organism=Nannochloropsis oceanica|type=mRNA|length=2205bp ATGGCCCCCGCCACCCTGAAATATAAGCTCAAAAAGGTAGAGGAGGGGCT GGCCGGGGACGAAAAGCCGGTTTGTGCCTTCTTCTCCCTGCCACAAGGTT GCCGAAACGGAGCCAAGTGTCCTTTTATGCACGGGGAGGCAGGCGCCGCA TCCGAGGAGCGGCCCAAGGCCACCCCCACAAATAAGACGACAGGTGTGAC CAAGAACGCTCAGGCCATGCAGCAAGTCCGCCTTCAGCTCGCATCGGAGC AGGCTAAGAAGCGTACGGCTCCCGCCCCCTCGACGCCTGTTGGTGGTGCC ACCAGCACATTTGCCAAAAGGTTTAAGCGACAGGAGCCCGAAGAGGAGGA GTCCACCGAGGAGGAGGACGAGGAGGAAGGTGAGGAGGAAAAAGTCCCCG CCCCACCCCTCAACGTCATCAAGCCCACAGTTCCTGCGCGACAAGTTCCT GTGCCGACAAAAACTGCGCCTGCATCCAAAAAGGCAGCTCCTGTCCCCAC CCTCAGCAAGCCCGTCGGCACGGGCAATACTGATGATGTGATGAATCCTT TCCTCGCGATTGCTCGGCCTCCCACATCCGCGCCGCCCACGCAACAACAG CAACAACAGCAACAGCAGCAACAGCAGCAACAGCAGCAGCAGAAGAAGAA GCAATTTCCTGCAGGACCGGCGACGAACGCCACCCCCGTCACCATAGGAA ACAAGAAAAACAACACCAGTAACACCAAGCCCCCTCCTGTTGCCAAGACC ATAGTTCCCGCTCCGATAGCGGCAGCAGTGGCTCCAATCGAACGCAGACC TGCTGCACGTGTGACTGCCGCTGCCCTCACAAACAACAAACCCGCTAATG GAAATGGGGTGGGGATGCTTGGGAAGATCTCTGCCTTGCCCGTCACTCCA TTTACTATCACACACAATCACAAGATGGAAATGAAGCAGGAGGAGGTGGA GGTGGAGGACGGAGAGGTTGTGGAAGAAGGGGGAGGGGTAGAGGAAGAAC AGCACTTCAAGGAGGAGATAGAGGAAGAGAAGCCGGTGGGGGCGGTAGCC AAAAAGGTCAAGAAACAACAGCAGCTTCAGCAACAGCGGCAGGAGGAAGT TGTTATGGAGGAGGAGGTGTGCGTACACGGGGAGAGCAATTGGTCCTGCT GCGTGAAGGCTACTTTGGATCATGCGCGTTTTGAACCCAACTATCGGGTG GTTGCTAGCAAAACGAAGGGGGAGGGGGAGTGGATCGCAGCGAAAAAGCA CGGGGCGTGGTGCAAGGACCTCCCTCACGTCCTCGCTTTGGATTGTGAGA TGTGTGCAACCCGGGATCCGGTCAGCATGGAGCAGGATGGGAAGGCTTTG ATCCGATTAAGTGTAGTGAGTGGGCACGATGAGAACCAGGTATTGCTTGA CACGCTCGTCTTGCCTTCCTTGCCTGTGGTGGACTATCGCACAGACATCC ATGGGATTCGCCCAGAGGACTTGAGAAGTGTAATGTTTACATTTAGACAT GCTCAGGCGGCGATGCTGCATTTGTGTTGTACCGAGACTGTGCTGGTGGG TCATGGGTTGGCCAACGATCTGACTGCTTTAAAAATGAAGCACTCCAAGG TGGTGGACACTGCCCTTCTCTTCGAGAGGGAGGACGCGCCAAACCATACC CCTGCATTAAAGGACGTGGCGGGTGCGTTGCTTGGCTTGGATATGCCGGA CATGCACGATTCGGTGGCAGATGCGCAGGTCACGCTGAGAATCGCCCGAC ACTTTTTGGAGCAGGGACCCGTGGCGCCTGTCCCCCGTTTACCGGCAGCG AGCAATAAGAAGGGGAGGCGGGCAGAGGCACAGCAAAGTTGCCTTTTATT GCATCGGATTCCTCTGTATGTGAAGGCGGAACATATCTTGGAGATGTTTC AGAGTCGGACCCATGTCATGCCTGTGGCGGTGGATCCAGTAGTGGCGACG GGGGATGGAAGCTTGGGGAGGGCTACTGCCCGCTTTCTGTCAAAGCACCA TGCCGATCTTGCGTTTAGTACCTTGACGGGCCCGGCTAGGCCTGATAAGG ATGGACGGCCCCAGAAGAGGGTGCATTTGGCGGGGAAGAAGGATTATGTG CAGGTGAGGTTGATGTACGCGCCAGGGAAGGAGGAGGGAGAGGAAGGGGG GGAGGGAGTGGTGAAAGAGGATGCGACGTCGTCGCCGCCGGCGAAGATCT TTTAG back to topprotein sequence of NO18G01060.1 >NO18G01060.1-protein ID=NO18G01060.1-protein|Name=NO18G01060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=735bp MAPATLKYKLKKVEEGLAGDEKPVCAFFSLPQGCRNGAKCPFMHGEAGAA SEERPKATPTNKTTGVTKNAQAMQQVRLQLASEQAKKRTAPAPSTPVGGA TSTFAKRFKRQEPEEEESTEEEDEEEGEEEKVPAPPLNVIKPTVPARQVP VPTKTAPASKKAAPVPTLSKPVGTGNTDDVMNPFLAIARPPTSAPPTQQQ QQQQQQQQQQQQQQKKKQFPAGPATNATPVTIGNKKNNTSNTKPPPVAKT IVPAPIAAAVAPIERRPAARVTAAALTNNKPANGNGVGMLGKISALPVTP FTITHNHKMEMKQEEVEVEDGEVVEEGGGVEEEQHFKEEIEEEKPVGAVA KKVKKQQQLQQQRQEEVVMEEEVCVHGESNWSCCVKATLDHARFEPNYRV VASKTKGEGEWIAAKKHGAWCKDLPHVLALDCEMCATRDPVSMEQDGKAL IRLSVVSGHDENQVLLDTLVLPSLPVVDYRTDIHGIRPEDLRSVMFTFRH AQAAMLHLCCTETVLVGHGLANDLTALKMKHSKVVDTALLFEREDAPNHT PALKDVAGALLGLDMPDMHDSVADAQVTLRIARHFLEQGPVAPVPRLPAA SNKKGRRAEAQQSCLLLHRIPLYVKAEHILEMFQSRTHVMPVAVDPVVAT GDGSLGRATARFLSKHHADLAFSTLTGPARPDKDGRPQKRVHLAGKKDYV QVRLMYAPGKEEGEEGGEGVVKEDATSSPPAKIF* back to topmRNA from alignment at chr18:375411..377615- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO18G01060.1 ID=NO18G01060.1|Name=NO18G01060.1|organism=Nannochloropsis oceanica|type=mRNA|length=2205bp|location=Sequence derived from alignment at chr18:375411..377615- (Nannochloropsis oceanica) ATGGCCCCCGCCACCCTGAAATATAAGCTCAAAAAGGTAGAGGAGGGGCT
GGCCGGGGACGAAAAGCCGGTTTGTGCCTTCTTCTCCCTGCCACAAGGTT
GCCGAAACGGAGCCAAGTGTCCTTTTATGCACGGGGAGGCAGGCGCCGCA
TCCGAGGAGCGGCCCAAGGCCACCCCCACAAATAAGACGACAGGTGTGAC
CAAGAACGCTCAGGCCATGCAGCAAGTCCGCCTTCAGCTCGCATCGGAGC
AGGCTAAGAAGCGTACGGCTCCCGCCCCCTCGACGCCTGTTGGTGGTGCC
ACCAGCACATTTGCCAAAAGGTTTAAGCGACAGGAGCCCGAAGAGGAGGA
GTCCACCGAGGAGGAGGACGAGGAGGAAGGTGAGGAGGAAAAAGTCCCCG
CCCCACCCCTCAACGTCATCAAGCCCACAGTTCCTGCGCGACAAGTTCCT
GTGCCGACAAAAACTGCGCCTGCATCCAAAAAGGCAGCTCCTGTCCCCAC
CCTCAGCAAGCCCGTCGGCACGGGCAATACTGATGATGTGATGAATCCTT
TCCTCGCGATTGCTCGGCCTCCCACATCCGCGCCGCCCACGCAACAACAG
CAACAACAGCAACAGCAGCAACAGCAGCAACAGCAGCAGCAGAAGAAGAA
GCAATTTCCTGCAGGACCGGCGACGAACGCCACCCCCGTCACCATAGGAA
ACAAGAAAAACAACACCAGTAACACCAAGCCCCCTCCTGTTGCCAAGACC
ATAGTTCCCGCTCCGATAGCGGCAGCAGTGGCTCCAATCGAACGCAGACC
TGCTGCACGTGTGACTGCCGCTGCCCTCACAAACAACAAACCCGCTAATG
GAAATGGGGTGGGGATGCTTGGGAAGATCTCTGCCTTGCCCGTCACTCCA
TTTACTATCACACACAATCACAAGATGGAAATGAAGCAGGAGGAGGTGGA
GGTGGAGGACGGAGAGGTTGTGGAAGAAGGGGGAGGGGTAGAGGAAGAAC
AGCACTTCAAGGAGGAGATAGAGGAAGAGAAGCCGGTGGGGGCGGTAGCC
AAAAAGGTCAAGAAACAACAGCAGCTTCAGCAACAGCGGCAGGAGGAAGT
TGTTATGGAGGAGGAGGTGTGCGTACACGGGGAGAGCAATTGGTCCTGCT
GCGTGAAGGCTACTTTGGATCATGCGCGTTTTGAACCCAACTATCGGGTG
GTTGCTAGCAAAACGAAGGGGGAGGGGGAGTGGATCGCAGCGAAAAAGCA
CGGGGCGTGGTGCAAGGACCTCCCTCACGTCCTCGCTTTGGATTGTGAGA
TGTGTGCAACCCGGGATCCGGTCAGCATGGAGCAGGATGGGAAGGCTTTG
ATCCGATTAAGTGTAGTGAGTGGGCACGATGAGAACCAGGTATTGCTTGA
CACGCTCGTCTTGCCTTCCTTGCCTGTGGTGGACTATCGCACAGACATCC
ATGGGATTCGCCCAGAGGACTTGAGAAGTGTAATGTTTACATTTAGACAT
GCTCAGGCGGCGATGCTGCATTTGTGTTGTACCGAGACTGTGCTGGTGGG
TCATGGGTTGGCCAACGATCTGACTGCTTTAAAAATGAAGCACTCCAAGG
TGGTGGACACTGCCCTTCTCTTCGAGAGGGAGGACGCGCCAAACCATACC
CCTGCATTAAAGGACGTGGCGGGTGCGTTGCTTGGCTTGGATATGCCGGA
CATGCACGATTCGGTGGCAGATGCGCAGGTCACGCTGAGAATCGCCCGAC
ACTTTTTGGAGCAGGGACCCGTGGCGCCTGTCCCCCGTTTACCGGCAGCG
AGCAATAAGAAGGGGAGGCGGGCAGAGGCACAGCAAAGTTGCCTTTTATT
GCATCGGATTCCTCTGTATGTGAAGGCGGAACATATCTTGGAGATGTTTC
AGAGTCGGACCCATGTCATGCCTGTGGCGGTGGATCCAGTAGTGGCGACG
GGGGATGGAAGCTTGGGGAGGGCTACTGCCCGCTTTCTGTCAAAGCACCA
TGCCGATCTTGCGTTTAGTACCTTGACGGGCCCGGCTAGGCCTGATAAGG
ATGGACGGCCCCAGAAGAGGGTGCATTTGGCGGGGAAGAAGGATTATGTG
CAGGTGAGGTTGATGTACGCGCCAGGGAAGGAGGAGGGAGAGGAAGGGGG
GGAGGGAGTGGTGAAAGAGGATGCGACGTCGTCGCCGCCGGCGAAGATCT
TTTAG back to topCoding sequence (CDS) from alignment at chr18:375411..377615- >NO18G01060.1 ID=NO18G01060.1|Name=NO18G01060.1|organism=Nannochloropsis oceanica|type=CDS|length=2205bp|location=Sequence derived from alignment at chr18:375411..377615- (Nannochloropsis oceanica) ATGGCCCCCGCCACCCTGAAATATAAGCTCAAAAAGGTAGAGGAGGGGCT GGCCGGGGACGAAAAGCCGGTTTGTGCCTTCTTCTCCCTGCCACAAGGTT GCCGAAACGGAGCCAAGTGTCCTTTTATGCACGGGGAGGCAGGCGCCGCA TCCGAGGAGCGGCCCAAGGCCACCCCCACAAATAAGACGACAGGTGTGAC CAAGAACGCTCAGGCCATGCAGCAAGTCCGCCTTCAGCTCGCATCGGAGC AGGCTAAGAAGCGTACGGCTCCCGCCCCCTCGACGCCTGTTGGTGGTGCC ACCAGCACATTTGCCAAAAGGTTTAAGCGACAGGAGCCCGAAGAGGAGGA GTCCACCGAGGAGGAGGACGAGGAGGAAGGTGAGGAGGAAAAAGTCCCCG CCCCACCCCTCAACGTCATCAAGCCCACAGTTCCTGCGCGACAAGTTCCT GTGCCGACAAAAACTGCGCCTGCATCCAAAAAGGCAGCTCCTGTCCCCAC CCTCAGCAAGCCCGTCGGCACGGGCAATACTGATGATGTGATGAATCCTT TCCTCGCGATTGCTCGGCCTCCCACATCCGCGCCGCCCACGCAACAACAG CAACAACAGCAACAGCAGCAACAGCAGCAACAGCAGCAGCAGAAGAAGAA GCAATTTCCTGCAGGACCGGCGACGAACGCCACCCCCGTCACCATAGGAA ACAAGAAAAACAACACCAGTAACACCAAGCCCCCTCCTGTTGCCAAGACC ATAGTTCCCGCTCCGATAGCGGCAGCAGTGGCTCCAATCGAACGCAGACC TGCTGCACGTGTGACTGCCGCTGCCCTCACAAACAACAAACCCGCTAATG GAAATGGGGTGGGGATGCTTGGGAAGATCTCTGCCTTGCCCGTCACTCCA TTTACTATCACACACAATCACAAGATGGAAATGAAGCAGGAGGAGGTGGA GGTGGAGGACGGAGAGGTTGTGGAAGAAGGGGGAGGGGTAGAGGAAGAAC AGCACTTCAAGGAGGAGATAGAGGAAGAGAAGCCGGTGGGGGCGGTAGCC AAAAAGGTCAAGAAACAACAGCAGCTTCAGCAACAGCGGCAGGAGGAAGT TGTTATGGAGGAGGAGGTGTGCGTACACGGGGAGAGCAATTGGTCCTGCT GCGTGAAGGCTACTTTGGATCATGCGCGTTTTGAACCCAACTATCGGGTG GTTGCTAGCAAAACGAAGGGGGAGGGGGAGTGGATCGCAGCGAAAAAGCA CGGGGCGTGGTGCAAGGACCTCCCTCACGTCCTCGCTTTGGATTGTGAGA TGTGTGCAACCCGGGATCCGGTCAGCATGGAGCAGGATGGGAAGGCTTTG ATCCGATTAAGTGTAGTGAGTGGGCACGATGAGAACCAGGTATTGCTTGA CACGCTCGTCTTGCCTTCCTTGCCTGTGGTGGACTATCGCACAGACATCC ATGGGATTCGCCCAGAGGACTTGAGAAGTGTAATGTTTACATTTAGACAT GCTCAGGCGGCGATGCTGCATTTGTGTTGTACCGAGACTGTGCTGGTGGG TCATGGGTTGGCCAACGATCTGACTGCTTTAAAAATGAAGCACTCCAAGG TGGTGGACACTGCCCTTCTCTTCGAGAGGGAGGACGCGCCAAACCATACC CCTGCATTAAAGGACGTGGCGGGTGCGTTGCTTGGCTTGGATATGCCGGA CATGCACGATTCGGTGGCAGATGCGCAGGTCACGCTGAGAATCGCCCGAC ACTTTTTGGAGCAGGGACCCGTGGCGCCTGTCCCCCGTTTACCGGCAGCG AGCAATAAGAAGGGGAGGCGGGCAGAGGCACAGCAAAGTTGCCTTTTATT GCATCGGATTCCTCTGTATGTGAAGGCGGAACATATCTTGGAGATGTTTC AGAGTCGGACCCATGTCATGCCTGTGGCGGTGGATCCAGTAGTGGCGACG GGGGATGGAAGCTTGGGGAGGGCTACTGCCCGCTTTCTGTCAAAGCACCA TGCCGATCTTGCGTTTAGTACCTTGACGGGCCCGGCTAGGCCTGATAAGG ATGGACGGCCCCAGAAGAGGGTGCATTTGGCGGGGAAGAAGGATTATGTG CAGGTGAGGTTGATGTACGCGCCAGGGAAGGAGGAGGGAGAGGAAGGGGG GGAGGGAGTGGTGAAAGAGGATGCGACGTCGTCGCCGCCGGCGAAGATCT TTTAG back to top
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