NO18G00680.1, NO18G00680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G00680.1
Unique NameNO18G00680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1668
Alignment locationchr18:279612..281392 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:279612..281392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G00680.1 vs.
Match: EWM23278.1 (Ankyrin repeat-containing domain protein [Nannochloropsis gaditana])

HSP 1 Score: 343.6 bits (880), Expect = 5.900e-91
Identity = 195/288 (67.71%), Postives = 221/288 (76.74%), Query Frame = 0 
Query:   10 LATLLLLSSATRSFSFSNTVVRS--TLS--VLFMSTSSSSSSSSFSSSSPTTSTSIPSTTKSPYVRADGIHLNYDPYTPEMRSKYGAPGQTDREGFDPYADRVGPGIYGGHVKRDECGRVIYGEQYQNHNPRPGPVYAGGGYTPIVQALGLGQKALEELLDACPEAVNEVSTGGATPLHMAGMSKRNQEMTEILIRRGGNIEAVDTYGYRPLHRMASNNLAVGAKALLKAGADPKAIAG----------TGE-GVGRRDKGETPMAVARSAGAWDVVQVLLPYYSPSS 283
            L   +L SS TR+ +FS  V      LS  VL MS +SSSS SS SSSS   S S  ST+ + YVRADG+ +NYDPYTPEMR+KYGAPG+TD EGFDPY+D VGPGIYGG+VKRD  G+++ G+QYQ HNPRPGPVYAGGGY PIV+A+ LG  AL +LLDACPEAVNEV+TGGATPLHMAGMS+RNQ+ T  LI RGG+IEAVDTYGYRPLHRMASNNLAVGA ALL AGADPKA AG           GE  V   + GETPM VARSAGAWDVVQ+LLPYY+  S
Sbjct:    9 LTLSVLFSSVTRAVTFSCVVCPPFRPLSPIVLAMSAASSSSKSSCSSSSSLPSDST-STSCTSYVRADGVRMNYDPYTPEMRAKYGAPGRTDSEGFDPYSDSVGPGIYGGNVKRDADGKIVVGDQYQGHNPRPGPVYAGGGYAPIVEAMRLGPDALNDLLDACPEAVNEVTTGGATPLHMAGMSQRNQKGTAFLIARGGDIEAVDTYGYRPLHRMASNNLAVGAAALLDAGADPKAPAGIKRRYANAGNKGETDVEDTESGETPMDVARSAGAWDVVQLLLPYYTSGS 295
The following BLAST results are available for this feature:
BLAST of NO18G00680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23278.15.900e-9167.71Ankyrin repeat-containing domain protein [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G00680NO18G00680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G00680.1NO18G00680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G00680.1.cds1NO18G00680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00680.1.cds2NO18G00680.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G00680.1 ID=NO18G00680.1|Name=NO18G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1668bp
ACCGCATTGCGCATTTGCGCATTTGCGCATTTATTAAAAGCCTCTGCACG
TGAGTCTGTTGTTCTTGTCTGGGTACGAGTGGTAACAATTATTGCATGCG
GTTATCATTGCAATGTCTGTTTTCATCGAGTCCTTTTTTGGTAACTCGAT
CGCAATCCCTTCACCTCATCCCCTGCCCCCCTGACTCACTCACAGGCTTG
GGGTGTACAGCAACGGTACATGCGCTTTGCCTCTCATCCGCGCACGCTGG
CCACCTTACTCCTTCTTTCATCCGCCACCCGCTCCTTCTCTTTTTCCAAC
ACCGTCGTCCGCTCCACCCTCTCTGTCCTTTTCATGTCTACTTCCTCCTC
CTCGTCTTCGTCGTCCTTTTCCTCCTCCTCCCCTACCACGAGCACCTCGA
TTCCCAGCACCACCAAATCCCCATATGTCCGCGCCGATGGCATCCATCTC
AACTATGATCCGTACACACCCGAAATGCGGTCAAAGTACGGCGCTCCTGG
CCAGACAGATCGAGAAGGGTTCGATCCTTACGCAGATAGGGTGGGCCCAG
GCATCTATGGCGGCCACGTGAAGCGCGATGAGTGTGGACGAGTAATCTAC
GGAGAACAATACCAAAATCACAATCCTCGCCCCGGGCCTGTGTATGCGGG
GGGCGGATATACACCTATAGTGCAAGCTTTAGGGTTGGGGCAGAAAGCAT
TGGAGGAGCTTCTGGACGCGTGTCCAGAGGCCGTAAATGAGGTTTCGACC
GGGGGAGCCACACCCCTACATATGGCTGGGATGAGTAAACGAAATCAAGA
AATGACAGAGATCTTGATACGCAGGGGTGGGAACATTGAGGCCGTGGATA
CTTATGGCTATCGTCCGCTCCATCGTATGGCCAGCAATAATTTGGCTGTG
GGCGCAAAAGCGCTTCTCAAGGCCGGGGCTGACCCTAAAGCTATCGCCGG
GACTGGGGAAGGTGTAGGAAGGAGGGATAAAGGAGAGACACCGATGGCAG
TTGCTCGATCGGCGGGGGCATGGGATGTGGTGCAAGTGCTGTTGCCTTAT
TATTCTCCCTCGTCATCCTAATAAGTGGTTGGGAGCTTCAGAGGGAAGAA
AGAGAAGTAGAGGGAAGGAAAAGTCCGAGAAGGGGAAAGAAGACATCAAA
AAAGGAGAAACATTGAAAAAATCAGGGAAATAATGATTCATAAGAAGGCT
GTATGTCGCAGTTGCGGCGCGGCCGGCATCGATCTCACGAAAGAATCACG
CAAAGTGAAGCTACATGCGGGGAGGGACTACCCGGAAGGCGGAGGGGGAA
ACTAAAATGAACGAAACAAGAACACTAAATCTAGCTGCATGCCATCAAAA
CTCATCGAGAACGTTGCTGAGAGCGCAAGACACTCGGGTCTTTCTGTCGC
CTTGCCGTGTGTCTGCACGTGCGTGCGTTCGTTGTTCACACTGTGTGTGT
GCAAGTTTGAACATGGCCCTCGGCGGTTTGCGCCCGTTTACAAGATGACT
CCCAACGGAAGAAAGTAGTCGGACACTGTCACATGCATACGCCCACCCCC
AGACCGTCAGTTCACCCCCTTTTCGTATGCCTCTTATATGTACATGTGGC
TGTCTCCCATGTCCCGGTCTTACCTTTGTTTTCTGTCCCACACTAACACA
CCCCTTCCACTACCCTCC
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protein sequence of NO18G00680.1

>NO18G00680.1-protein ID=NO18G00680.1-protein|Name=NO18G00680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=284bp
MRFASHPRTLATLLLLSSATRSFSFSNTVVRSTLSVLFMSTSSSSSSSSF
SSSSPTTSTSIPSTTKSPYVRADGIHLNYDPYTPEMRSKYGAPGQTDREG
FDPYADRVGPGIYGGHVKRDECGRVIYGEQYQNHNPRPGPVYAGGGYTPI
VQALGLGQKALEELLDACPEAVNEVSTGGATPLHMAGMSKRNQEMTEILI
RRGGNIEAVDTYGYRPLHRMASNNLAVGAKALLKAGADPKAIAGTGEGVG
RRDKGETPMAVARSAGAWDVVQVLLPYYSPSSS*
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mRNA from alignment at chr18:279612..281392-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G00680.1 ID=NO18G00680.1|Name=NO18G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1781bp|location=Sequence derived from alignment at chr18:279612..281392- (Nannochloropsis oceanica)
ACCGCATTGCGCATTTGCGCATTTGCGCATTTATTAAAAGCCTCTGCACG
TGAGTCTGTTGTTCTTGTCTGGGTACGAGTGGTAACAATTATTGCATGCG
GTTATCATTGCAATGTCTGTTTTCATCGAGTCCTTTTTTGGTAACTCGAT
CGCAATCCCTTCACCTCATCCCCTGCCCCCCTGACTCACTCACAGGCTTG
GGGTGTACAGCAACGGTACATGCGCTTTGCCTCTCATCCGCGCACGCTGG
CCACCTTACTCCTTCTTTCATCCGCCACCCGCTCCTTCTCTTTTTCCAAC
ACCGTCGTCCGCTCCACCCTCTCTGTCCTTTTCATGTCTACTTCCTCCTC
CTCGTCTTCGTCGTCCTTTTCCTCCTCCTCCCCTACCACGAGCACCTCGA
TTCCCAGCACCACCAAATCCCCATATGTCCGCGCCGATGGCATCCATCTC
AACTATGATCCGTACACACCCGAAATGCGGTCAAAGTACGGCGCTCCTGG
CCAGACAGATCGAGAAGGGTTCGATCCTTACGCAGATAGGGTGGGCCCAG
GCATCTATGGCGGCCACGTGAAGCGCGATGAGTGTGGACGAGTAATCTAC
GGAGAACAATACCAAAATCACAATCCTCGCCCCGGGCCTGTGTATGCGGG
GGGCGGATATACACCTATAGTGCAAGCTTTAGGGTTGGGGCAGAAAGCAT
TGGAGGAGCTTCTGGACGCGTGTCCAGAGGCCGTAAATGAGGTTTCGACC
GGGGGAGCCACACCCCTACATATGGCTGGGATGAGTAAACGAAATCAAGA
AATGACAGAGATCTTGATACGCAGGGGTGGGAACATGTACGTGCGAAGAG
AGGAGGGAGAGAGGGAAAATGGAGGCATAGCCAAAGTACTCACATGTACA
CCCATCCCCTCACGTGCATACGTATACAACCCACATATACACATATCAGT
GAGGCCGTGGATACTTATGGCTATCGTCCGCTCCATCGTATGGCCAGCAA
TAATTTGGCTGTGGGCGCAAAAGCGCTTCTCAAGGCCGGGGCTGACCCTA
AAGCTATCGCCGGGACTGGGGAAGGTGTAGGAAGGAGGGATAAAGGAGAG
ACACCGATGGCAGTTGCTCGATCGGCGGGGGCATGGGATGTGGTGCAAGT
GCTGTTGCCTTATTATTCTCCCTCGTCATCCTAATAAGTGGTTGGGAGCT
TCAGAGGGAAGAAAGAGAAGTAGAGGGAAGGAAAAGTCCGAGAAGGGGAA
AGAAGACATCAAAAAAGGAGAAACATTGAAAAAATCAGGGAAATAATGAT
TCATAAGAAGGCTGTATGTCGCAGTTGCGGCGCGGCCGGCATCGATCTCA
CGAAAGAATCACGCAAAGTGAAGCTACATGCGGGGAGGGACTACCCGGAA
GGCGGAGGGGGAAACTAAAATGAACGAAACAAGAACACTAAATCTAGCTG
CATGCCATCAAAACTCATCGAGAACGTTGCTGAGAGCGCAAGACACTCGG
GTCTTTCTGTCGCCTTGCCGTGTGTCTGCACGTGCGTGCGTTCGTTGTTC
ACACTGTGTGTGTGCAAGTTTGAACATGGCCCTCGGCGGTTTGCGCCCGT
TTACAAGATGACTCCCAACGGAAGAAAGTAGTCGGACACTGTCACATGCA
TACGCCCACCCCCAGACCGTCAGTTCACCCCCTTTTCGTATGCCTCTTAT
ATGTACATGTGGCTGTCTCCCATGTCCCGGTCTTACCTTTGTTTTCTGTC
CCACACTAACACACCCCTTCCACTACCCTCC
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Coding sequence (CDS) from alignment at chr18:279612..281392-

>NO18G00680.1 ID=NO18G00680.1|Name=NO18G00680.1|organism=Nannochloropsis oceanica|type=CDS|length=852bp|location=Sequence derived from alignment at chr18:279612..281392- (Nannochloropsis oceanica)
ATGCGCTTTGCCTCTCATCCGCGCACGCTGGCCACCTTACTCCTTCTTTC
ATCCGCCACCCGCTCCTTCTCTTTTTCCAACACCGTCGTCCGCTCCACCC
TCTCTGTCCTTTTCATGTCTACTTCCTCCTCCTCGTCTTCGTCGTCCTTT
TCCTCCTCCTCCCCTACCACGAGCACCTCGATTCCCAGCACCACCAAATC
CCCATATGTCCGCGCCGATGGCATCCATCTCAACTATGATCCGTACACAC
CCGAAATGCGGTCAAAGTACGGCGCTCCTGGCCAGACAGATCGAGAAGGG
TTCGATCCTTACGCAGATAGGGTGGGCCCAGGCATCTATGGCGGCCACGT
GAAGCGCGATGAGTGTGGACGAGTAATCTACGGAGAACAATACCAAAATC
ACAATCCTCGCCCCGGGCCTGTGTATGCGGGGGGCGGATATACACCTATA
GTGCAAGCTTTAGGGTTGGGGCAGAAAGCATTGGAGGAGCTTCTGGACGC
GTGTCCAGAGGCCGTAAATGAGGTTTCGACCGGGGGAGCCACACCCCTAC
ATATGGCTGGGATGAGTAAACGAAATCAAGAAATGACAGAGATCTTGATA
CGCAGGGGTGGGAACATTGAGGCCGTGGATACTTATGGCTATCGTCCGCT
CCATCGTATGGCCAGCAATAATTTGGCTGTGGGCGCAAAAGCGCTTCTCA
AGGCCGGGGCTGACCCTAAAGCTATCGCCGGGACTGGGGAAGGTGTAGGA
AGGAGGGATAAAGGAGAGACACCGATGGCAGTTGCTCGATCGGCGGGGGC
ATGGGATGTGGTGCAAGTGCTGTTGCCTTATTATTCTCCCTCGTCATCCT
AA
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Synonyms
Publications