NO18G00400, NO18G00400 (gene) Nannochloropsis oceanica

Overview
NameNO18G00400
Unique NameNO18G00400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3183
Alignment locationchr18:166736..169918 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:166736..169918 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
The following BLAST results are available for this feature:
BLAST of NO18G00400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR050ncniR050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G00400.1NO18G00400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|262526gene_9814Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101374g1gene7205Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G00400.1NO18G00400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G00400 ID=NO18G00400|Name=NO18G00400|organism=Nannochloropsis oceanica|type=gene|length=3183bp
ATGGAAGAGGACGACGACCACGGTGGCGGCCACGCAGGGGAGGGCAGGCC
AGGAGCGGGGTCGACGGCAGCAAAGCTTTTGTATAAGGCCATTCAAGAGG
ACGATTTGGAGACCATCCGACGCCTGGTGGAGGGAAAGgtacgcgcgagg
gaattgaaggggttgatggaaatggtgaaagggaaagagggagagaggga
gggagggatggcgggcaagcagccaagacgagacccacggcgctattttt
tggggacagatgctctcgagtcgcaggccgtcgggaaaggagggaagaac
atccgcgaggagagagggctggatgcaagcaggcaccaataccgctaggc
aatgcaatgagtgtcctgagagagccttccttgttatgtctgtcggcatg
ttgggctgctgcccctgcaagcaccctcctctcctccctccctccccctc
taactttttctcgtcacctggctccacataacacgcatcacacaccggcc
cgcgcactcactccacccgacctctcctctccttgcctccctccctctcc
ccccccgcttattcagGACGTGCAGCATTTGCGTTGGATGATGCTGCAAC
GGAATTATGACATGGACGAGgtaagggagggaaggagggagggaggagct
gtacgtacgtataggtagccaagtgaaagaaagggcaggcgaagcgaaag
cttgagtactgtactatggtccttggcacacgctgcctccctcctgcccg
ccctccactcggattacatcgacccacgttccctccttcccgccctccct
ccctccctccctccctccctccctccctccctccctccctccctccgctc
aggcgaagcgcgcctgtagttctctctccactcacactatctcctctccc
tttcccccccttccttcctctctttttccctccctccagGTCGAATCCCA
GCAAGTCGAGATGCCTTTCCTAGTCCTCGCCACCCTCCGTCAGAACAAGC
GCGTCATACGGTATCTCCTCTCTCAGGGTGTGGAGAACGTGAACGTTCGG
GACGAGGCGAGCGGTAACACGCCCCTGCACTATGCCATCATGATGGTGGA
TGGGGAGGAGGAAGATGgtaaggggaggaaggagtcgactgccttgcttg
ccctccctcccttccttcctccctccctccttccctccctccctccttcc
ctcctcccttccctctcggtgcccatcgtaactccctcttcctccctcgc
gtacttcttaacgccctccccccctctcttccctctatcagGTCGAGGAC
GAAGAATGCGGGCCCTGGCCTCCCTCCTTCGGCGCTTCCGCCGCCACCTC
CGCCCGCACGCCTGGCTGGGGAGGAAGGGCAGGAGGGAGGACACGGGGGA
GGAAGGGACGGAGGAGGAGCGACAGATGGACATGGTGACGTTCTTGTTGT
ATCTTGGCGCGAACCCCACGGCCAAGAATAAGAAGGGGAATACGCCCTTG
ATGGAGCTGGCCCGCTTCCAGGCACACGGGAGGGCGAGgtgggaaggagg
gagggagggagggaaaagggataagctcttgaattttttcctttccctgg
aagggcaagaggcaacgactcactcatattactccgtccctcctcccctc
cctctcggccagCCCCAGTGCCTATCCGTCCTTCTCCCTGCACCCCCATG
GCGGACACTGTTTCTACCCCCCGCTCTTCACGCGGCCCGAGGACGTGAAG
GAGCGACGGGTCATGCACGGGATGCTCGAGCACATGCTGGAGGCGTGTGA
GGGCGTCAAGCGCGAGATTGACGCGCAAGgtacattttcctccttccctc
cctccttccgccttcccctcccttcctccttccctccctccttggatagg
tggagacgcaccgcccttgtcgccgcagtcacaattaatcctgaggctgt
ctcttaccttccctcactctctccttctcatcctccatccctccctcctg
ccctagACATGTGGGGACGCACCGCCCTCTTCATCGCCGCAGATGCTCTG
AATTACGAGGCCGTTAAAACTCTTCTCCGTTGCGGTGGCGCCGACCCGAC
CATTAAAAATCACCGAGgtatcgatccttaccctcctctctcctcttccc
tcccttctatcctctctctcttcttatgcatccctcgttccctccagatt
catcatgtctcctgtctgcctcaccacccttaccacaaccaccccctccc
tccctccctccctccctcactccctccctccctccctcctagGCGAGACC
ATCCTCGACCTTCTCATCAGCGGGAGGGGGCATCATTATCTCCTTCCCAA
GTACCGGCCCGTCCGCCGCTTGCTCGAGgtacgtcccttcttcttcttcc
ccttcctccctccttccctcccgtcctccctttcagcctcaccctccctc
ccacacctcaccctccctccctccctccccccctcccttagGATGCCCTC
TCGGAGCCCCTCCGTCTCCGGCTTGTCCACAAGGCGCGTTTCTTAAACGA
CGACATGCACGTCCTCACCCACCTCGCCGCCACCGCCTCTCTCCAAGgta
cgtcctccctcccgccctcccgtcctccctccttccctctccttcctgac
attctcctcctcctgcgaccatcctctcgacctccatccctacacactca
ccgtcgctccgtccctctctcccttcctccctccctccagAACCTCCTTC
CGCCGCGTTCTCTTCCTCCTGCGCCCAGGCCCCTGCTTACCTCCACGATC
GTCTCAAAAGCCAGCGTGCTCCCCTCCCCCACATCCAACTGCACTGGAAT
gtgagtcccgcacatccctccctccgtcccttctttctgccttccctccc
tcccttcctgcttgcttgcttctcctgttcatatcccacctttcttcccg
acaaatcatgaccttccctccctccctccttccctcccgccccgcagCTG
CCAATTTCTTCCGCCCCTTCCTCCCCCTCTTCCTCCTCCACCTCCCCTCC
CCCGCCCCCCCTCCCTCCCATGCGACCTTCACACCGGAGGGCGGGAGGGA
GGGCGGGAGGGAGGAGGCCTTGGCTGTGCTGGATTTTGTGGTGTCGGGCC
AGGGGCTTAAAAAGGAGCATTTTGACGAGCTGA
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protein sequence of NO18G00400.1

>NO18G00400.1-protein ID=NO18G00400.1-protein|Name=NO18G00400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=461bp
MEEDDDHGGGHAGEGRPGAGSTAAKLLYKAIQEDDLETIRRLVEGKDVQH
LRWMMLQRNYDMDEVESQQVEMPFLVLATLRQNKRVIRYLLSQGVENVNV
RDEASGNTPLHYAIMMVDGEEEDGRGRRMRALASLLRRFRRHLRPHAWLG
RKGRREDTGEEGTEEERQMDMVTFLLYLGANPTAKNKKGNTPLMELARFQ
AHGRASPSAYPSFSLHPHGGHCFYPPLFTRPEDVKERRVMHGMLEHMLEA
CEGVKREIDAQDMWGRTALFIAADALNYEAVKTLLRCGGADPTIKNHRGE
TILDLLISGRGHHYLLPKYRPVRRLLEDALSEPLRLRLVHKARFLNDDMH
VLTHLAATASLQEPPSAAFSSSCAQAPAYLHDRLKSQRAPLPHIQLHWNL
PISSAPSSPSSSSTSPPPPPLPPMRPSHRRAGGRAGGRRPWLCWILWCRA
RGLKRSILTS*
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Synonyms
Publications