NO18G00140.1, NO18G00140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G00140.1
Unique NameNO18G00140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length804
Alignment locationchr18:53929..54958 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:53929..54958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G00140.1 vs.
Match: XP_022041580.1 (uncharacterized protein LOC110944175 [Helianthus annuus])

HSP 1 Score: 110.9 bits (276), Expect = 6.100e-21
Identity = 52/100 (52.00%), Postives = 70/100 (70.00%), Query Frame = 0 
Query:  168 RAILTPKNKDGDALNDHAVQYFPGEEKVYLSADRLAQDENEGVYPTDLLNSMNPAGFAPHQLRMKVGIPIILLRNVNPAQGLANGTRLLILHISPHIIQA 268
            RAILT KN++ D +NDH +  F GEEK+Y S D  A+D+ + +YPTD LNS+  +G  PH+LR+K G PIILLRN++P  GL NGTRL+      ++I A
Sbjct: 1289 RAILTTKNENVDEINDHIIGIFQGEEKLYYSFDT-AEDDQKNLYPTDFLNSLTISGLPPHKLRLKTGCPIILLRNIDPPNGLCNGTRLICRAFGHNVIDA 1387
The following BLAST results are available for this feature:
BLAST of NO18G00140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_022041580.16.100e-2152.00uncharacterized protein LOC110944175 [Helianthus a... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G00140NO18G00140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G00140.1NO18G00140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G00140.1.cds1NO18G00140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00140.1.cds2NO18G00140.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G00140.1 ID=NO18G00140.1|Name=NO18G00140.1|organism=Nannochloropsis oceanica|type=mRNA|length=804bp
ATGTCAGTGACCGACGAGAATGCTCTTCTTCCTGGTCTCCCTTCTCATGA
GGAGGAGGAAGAGGAGATTGAGCTTTATCTCCTCCATCACGACGAAGAAC
AACAGGAGGAGGACGAAAACGACTTCCAAGGTTTCGACCTCGAAGTCGAG
GACGACAAGATTAATGATAACAACAGCTCCATCACCAGCGACACTGATGC
CAGTGCCATGGCCACAGCGGAAACAACTTCTGACACCGGCACCACCCGTA
CAAGAAACAAGCCCAGTAGGAAGCCTTCGGGGATTGCACTGGCCTTCGCG
AAGCCAGACGTCTCGCCGGAAGAGGCTGAGGAGTACGTCAAGAAACATCT
CATGCCAGACGCTATGCTGAGGGAGGCGTTCGCAGTAAGTCCATGTCTGC
ACCCTTCGCCAGAGCTGAACTACGACCCCATTCGGCTTCTCGACCACTTC
TACGGGGATTTCAATGACGCGCGCAATACAACGCAGAAAACTCGTATGTA
TCGCGCCATCCTCACCCCCAAGAACAAGGACGGCGACGCCTTGAACGACC
ACGCCGTCCAGTATTTCCCCGGAGAAGAAAAGGTATACCTCTCAGCAGAC
AGGCTAGCGCAGGACGAGAACGAGGGTGTATACCCCACGGATCTCTTAAA
CTCCATGAACCCGGCCGGCTTCGCCCCGCATCAACTTCGCATGAAAGTGG
GCATACCTATCATCCTGTTGCGGAACGTAAACCCGGCACAAGGCCTCGCC
AATGGGACACGTTTGCTCATCCTGCATATTTCTCCTCACATCATCCAGGC
TTAA
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protein sequence of NO18G00140.1

>NO18G00140.1-protein ID=NO18G00140.1-protein|Name=NO18G00140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp
MSVTDENALLPGLPSHEEEEEEIELYLLHHDEEQQEEDENDFQGFDLEVE
DDKINDNNSSITSDTDASAMATAETTSDTGTTRTRNKPSRKPSGIALAFA
KPDVSPEEAEEYVKKHLMPDAMLREAFAVSPCLHPSPELNYDPIRLLDHF
YGDFNDARNTTQKTRMYRAILTPKNKDGDALNDHAVQYFPGEEKVYLSAD
RLAQDENEGVYPTDLLNSMNPAGFAPHQLRMKVGIPIILLRNVNPAQGLA
NGTRLLILHISPHIIQA*
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mRNA from alignment at chr18:53929..54958-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G00140.1 ID=NO18G00140.1|Name=NO18G00140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1030bp|location=Sequence derived from alignment at chr18:53929..54958- (Nannochloropsis oceanica)
ATGTCAGTGACCGACGAGAATGCTCTTCTTCCTGGTCTCCCTTCTCATGA
GGAGGAGGAAGAGGAGATTGAGCTTTATCTCCTCCATCACGACGAAGAAC
AACAGGAGGAGGACGAAAACGACTTCCAAGGTTTCGACCTCGAAGTCGAG
GACGACAAGATTAATGATAACAACAGCTCCATCACCAGCGACACTGATGC
CAGTGCCATGGCCACAGCGGAAACAACTTCTGACACCGGCACCACCCGTA
CAAGAAACAAGCCCAGTAGGAAGCCTTCGGGGATTGCACTGGCCTTCGCG
AAGCCAGACGTCTCGCCGGAAGAGGCTGAGGAGTACGTCAAGAAACATCT
CATGCCAGACGCTATGCTGAGGGAGGGTAATTGGAGAATCAAAGAGGCAC
CGAGATACCATGCTAGTCGCAGCCCAATCTGGACATATGGGGTTATGTAC
GACAGGCCGGCCGTGGGGAGCGTGACTGCACAGCGGCGGTGGTAGTGCTT
GGCGACGGAGACTTGTCGTATAGGCAACGTGTCCATACTTTCCGGCCTAG
GAGCGGCTGGAAACTGCAATATCCATCTGAGAAGTGTCCATAACATCGTC
AGCGTTCGCAGTAAGTCCATGTCTGCACCCTTCGCCAGAGCTGAACTACG
ACCCCATTCGGCTTCTCGACCACTTCTACGGGGATTTCAATGACGCGCGC
AATACAACGCAGAAAACTCGTATGTATCGCGCCATCCTCACCCCCAAGAA
CAAGGACGGCGACGCCTTGAACGACCACGCCGTCCAGTATTTCCCCGGAG
AAGAAAAGGTATACCTCTCAGCAGACAGGCTAGCGCAGGACGAGAACGAG
GGTGTATACCCCACGGATCTCTTAAACTCCATGAACCCGGCCGGCTTCGC
CCCGCATCAACTTCGCATGAAAGTGGGCATACCTATCATCCTGTTGCGGA
ACGTAAACCCGGCACAAGGCCTCGCCAATGGGACACGTTTGCTCATCCTG
CATATTTCTCCTCACATCATCCAGGCTTAA
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Coding sequence (CDS) from alignment at chr18:53929..54958-

>NO18G00140.1 ID=NO18G00140.1|Name=NO18G00140.1|organism=Nannochloropsis oceanica|type=CDS|length=804bp|location=Sequence derived from alignment at chr18:53929..54958- (Nannochloropsis oceanica)
ATGTCAGTGACCGACGAGAATGCTCTTCTTCCTGGTCTCCCTTCTCATGA
GGAGGAGGAAGAGGAGATTGAGCTTTATCTCCTCCATCACGACGAAGAAC
AACAGGAGGAGGACGAAAACGACTTCCAAGGTTTCGACCTCGAAGTCGAG
GACGACAAGATTAATGATAACAACAGCTCCATCACCAGCGACACTGATGC
CAGTGCCATGGCCACAGCGGAAACAACTTCTGACACCGGCACCACCCGTA
CAAGAAACAAGCCCAGTAGGAAGCCTTCGGGGATTGCACTGGCCTTCGCG
AAGCCAGACGTCTCGCCGGAAGAGGCTGAGGAGTACGTCAAGAAACATCT
CATGCCAGACGCTATGCTGAGGGAGGCGTTCGCAGTAAGTCCATGTCTGC
ACCCTTCGCCAGAGCTGAACTACGACCCCATTCGGCTTCTCGACCACTTC
TACGGGGATTTCAATGACGCGCGCAATACAACGCAGAAAACTCGTATGTA
TCGCGCCATCCTCACCCCCAAGAACAAGGACGGCGACGCCTTGAACGACC
ACGCCGTCCAGTATTTCCCCGGAGAAGAAAAGGTATACCTCTCAGCAGAC
AGGCTAGCGCAGGACGAGAACGAGGGTGTATACCCCACGGATCTCTTAAA
CTCCATGAACCCGGCCGGCTTCGCCCCGCATCAACTTCGCATGAAAGTGG
GCATACCTATCATCCTGTTGCGGAACGTAAACCCGGCACAAGGCCTCGCC
AATGGGACACGTTTGCTCATCCTGCATATTTCTCCTCACATCATCCAGGC
TTAA
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Synonyms
Publications