NO18G00140, NO18G00140 (gene) Nannochloropsis oceanica

Overview
NameNO18G00140
Unique NameNO18G00140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1030
Alignment locationchr18:53929..54958 -

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Properties
Property NameValue
DescriptionPIF1 helicase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:53929..54958 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0000723telomere maintenance
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0003678DNA helicase activity
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR010285DNA_helicase_pif1-like
Homology
[Close]
BLAST of NO18G00140 vs. NCBI_GenBank
Match: XP_022030317.1 (ATP-dependent DNA helicase PIF1-like [Helianthus annuus])

HSP 1 Score: 110.9 bits (276), Expect = 6.100e-21
Identity = 54/116 (46.55%), Postives = 74/116 (63.79%), Query Frame = 0 
Query:  154 FNDARNTTQKTRMY--RAILTPKNKDGDALNDHAVQYFPGEEKVYLSADRLAQDENEGVYPTDLLNSMNPAGFAPHQLRMKVGIPIILLRNVNPAQGLANGTRLLILHISPHIIQA 268
            F   R   Q T     RAILT +N+  D +NDH +  F G+ KVY S D  A D+ + +YPT+ LNS+  +G  PH+LR+K G PIILLRN++P+ GL NGTRL+    +P++I A
Sbjct:  225 FPSLRTNVQPTECITSRAILTTRNETVDEINDHMIDLFQGDAKVYYSFD-TADDDKQNLYPTEFLNSLTISGLPPHKLRLKTGCPIILLRNIDPSNGLCNGTRLICKAFAPNVIDA 339
[Close]
BLAST of NO18G00140 vs. NCBI_GenBank
Match: XP_022041580.1 (uncharacterized protein LOC110944175 [Helianthus annuus])

HSP 1 Score: 110.9 bits (276), Expect = 6.100e-21
Identity = 52/100 (52.00%), Postives = 70/100 (70.00%), Query Frame = 0 
Query:  168 RAILTPKNKDGDALNDHAVQYFPGEEKVYLSADRLAQDENEGVYPTDLLNSMNPAGFAPHQLRMKVGIPIILLRNVNPAQGLANGTRLLILHISPHIIQA 268
            RAILT KN++ D +NDH +  F GEEK+Y S D  A+D+ + +YPTD LNS+  +G  PH+LR+K G PIILLRN++P  GL NGTRL+      ++I A
Sbjct: 1289 RAILTTKNENVDEINDHIIGIFQGEEKLYYSFD-TAEDDQKNLYPTDFLNSLTISGLPPHKLRLKTGCPIILLRNIDPPNGLCNGTRLICRAFGHNVIDA 1387
[Close]
BLAST of NO18G00140 vs. NCBI_GenBank
Match: XP_022003298.1 (uncharacterized protein LOC110900737 [Helianthus annuus])

HSP 1 Score: 110.9 bits (276), Expect = 6.100e-21
Identity = 54/116 (46.55%), Postives = 74/116 (63.79%), Query Frame = 0 
Query:  154 FNDARNTTQKTRMY--RAILTPKNKDGDALNDHAVQYFPGEEKVYLSADRLAQDENEGVYPTDLLNSMNPAGFAPHQLRMKVGIPIILLRNVNPAQGLANGTRLLILHISPHIIQA 268
            F   R   Q T     RAILT +N+  D +NDH +  F G+ KVY S D  A D+ + +YPT+ LNS+  +G  PH+LR+K G PIILLRN++P+ GL NGTRL+    +P++I A
Sbjct:  569 FPSLRTNVQPTECITSRAILTTRNETVDEINDHMIDLFQGDAKVYYSFD-TADDDKQNLYPTEFLNSLTISGLPPHKLRLKTGCPIILLRNIDPSNGLCNGTRLICKAFTPNVIDA 683
[Close]
BLAST of NO18G00140 vs. NCBI_GenBank
Match: XP_021991141.1 (ATP-dependent DNA helicase PIF1-like [Helianthus annuus] >XP_021991143.1 ATP-dependent DNA helicase PIF1-like [Helianthus annuus])

HSP 1 Score: 110.5 bits (275), Expect = 7.900e-21
Identity = 54/116 (46.55%), Postives = 74/116 (63.79%), Query Frame = 0 
Query:  154 FNDARNTTQKTRMY--RAILTPKNKDGDALNDHAVQYFPGEEKVYLSADRLAQDENEGVYPTDLLNSMNPAGFAPHQLRMKVGIPIILLRNVNPAQGLANGTRLLILHISPHIIQA 268
            F   R   Q T     RAILT +N+  D +NDH +  F G+ KVY S D  A D+ + +YPT+ LNS+  +G  PH+LR+K G PIILLRN++P+ GL NGTRL+    +P++I A
Sbjct:   97 FLSLRTNVQPTEYITSRAILTTRNETVDEINDHMIDLFQGDAKVYYSFD-TADDDKQNLYPTEFLNSLTISGLPPHKLRLKTGCPIILLRNIDPSNGLCNGTRLICKAFAPNVIDA 211
[Close]
BLAST of NO18G00140 vs. NCBI_GenBank
Match: XP_022003700.1 (uncharacterized protein LOC110901163 [Helianthus annuus] >XP_022003701.1 uncharacterized protein LOC110901164 [Helianthus annuus])

HSP 1 Score: 110.5 bits (275), Expect = 7.900e-21
Identity = 53/116 (45.69%), Postives = 74/116 (63.79%), Query Frame = 0 
Query:  154 FNDARNTTQKTRMY--RAILTPKNKDGDALNDHAVQYFPGEEKVYLSADRLAQDENEGVYPTDLLNSMNPAGFAPHQLRMKVGIPIILLRNVNPAQGLANGTRLLILHISPHIIQA 268
            F   R   Q T     RAILT +N+  D +NDH +  F G+ KVY S D    D+ + +YPT+ LNS+  +G  PH+LR+K+G PIILLRN++P+ GL NGTRL+    +P++I A
Sbjct: 1292 FPSLRTNVQPTECITSRAILTTRNETVDEINDHMIDLFQGDAKVYYSFD-TTDDDKQNLYPTEFLNSLTISGLPPHKLRLKIGCPIILLRNIDPSNGLCNGTRLICKAFAPNVIDA 1406
[Close]
BLAST of NO18G00140 vs. NCBI_GenBank
Match: XP_021866279.1 (uncharacterized protein LOC110804992 [Spinacia oleracea])

HSP 1 Score: 110.2 bits (274), Expect = 1.000e-20
Identity = 57/125 (45.60%), Postives = 77/125 (61.60%), Query Frame = 0 
Query:  142 DPIRLLDHFYGDFNDARNTTQKTRMYRAILTPKNKDGDALNDHAVQYFPGEEKVYLSADRLAQDENEGVYPTDLLNSMNPAGFAPHQLRMKVGIPIILLRNVNPAQGLANGTRLLILHISPHIIQ 267
            DPI  L        D  N +      RAILTP N D D++N + +Q FPGE  VY S D +  D+N  VYPT+ +N++ P G +PH+L +K+G P+ILLRNV P+ GL NGTRL+     P++IQ
Sbjct:  656 DPITDLTALTFPELDLNNFSSDIFTTRAILTPMNDDVDSINMNLIQKFPGESVVYKSFDTML-DDNCNVYPTEFINTLCPGGMSPHELILKIGSPVILLRNVLPSSGLCNGTRLICKGFYPNLIQ 779
[Close]
BLAST of NO18G00140 vs. NCBI_GenBank
Match: XP_017251224.1 (PREDICTED: ATP-dependent DNA helicase PIF1-like [Daucus carota subsp. sativus])

HSP 1 Score: 108.6 bits (270), Expect = 3.000e-20
Identity = 50/104 (48.08%), Postives = 73/104 (70.19%), Query Frame = 0 
Query:  168 RAILTPKNKDGDALNDHAVQYFPGEEKVYLSADRLAQ-----DENEGVYPTDLLNSMNPAGFAPHQLRMKVGIPIILLRNVNPAQGLANGTRLLILHISPHIIQ 267
            RAILTP N+D DA+N   + ++PGE KVYLS+D + +     +  E +YP++LLNSM  AG   H+L +K+G PI+L+RN+ PA+GL NGTRL+I  +   +I+
Sbjct:  507 RAILTPLNEDVDAINKDVLSHWPGESKVYLSSDSICKGSVNCESQECMYPSELLNSMKFAGIPNHELELKIGAPIVLMRNIAPAKGLCNGTRLIITQLCARVIE 610
[Close]
BLAST of NO18G00140 vs. NCBI_GenBank
Match: XP_017251225.1 (PREDICTED: uncharacterized protein LOC108221883 [Daucus carota subsp. sativus])

HSP 1 Score: 108.6 bits (270), Expect = 3.000e-20
Identity = 50/104 (48.08%), Postives = 73/104 (70.19%), Query Frame = 0 
Query:  168 RAILTPKNKDGDALNDHAVQYFPGEEKVYLSADRLAQ-----DENEGVYPTDLLNSMNPAGFAPHQLRMKVGIPIILLRNVNPAQGLANGTRLLILHISPHIIQ 267
            RAILTP N+D DA+N   + ++PGE KVYLS+D + +     +  E +YP++LLNSM  AG   H+L +K+G PI+L+RN+ PA+GL NGTRL+I  +   +I+
Sbjct: 1374 RAILTPLNEDVDAINKDVLSHWPGESKVYLSSDSICKGSVNCESQECMYPSELLNSMKFAGIPNHELELKIGAPIVLMRNIAPAKGLCNGTRLIITQLCARVIE 1477
[Close]
BLAST of NO18G00140 vs. NCBI_GenBank
Match: XP_022033647.1 (uncharacterized protein LOC110935550 [Helianthus annuus])

HSP 1 Score: 108.6 bits (270), Expect = 3.000e-20
Identity = 50/100 (50.00%), Postives = 70/100 (70.00%), Query Frame = 0 
Query:  168 RAILTPKNKDGDALNDHAVQYFPGEEKVYLSADRLAQDENEGVYPTDLLNSMNPAGFAPHQLRMKVGIPIILLRNVNPAQGLANGTRLLILHISPHIIQA 268
            RAIL+ KN+  D +N+  ++ F GEEKVY S D  A+D+    YP + LNS+N +G APH+LR+K+G PIILLRN++P+ GL NGTRL+      ++I A
Sbjct:  695 RAILSTKNESVDEINNQMIEIFQGEEKVYYSFDE-AEDDQRNFYPVEFLNSLNVSGLAPHKLRLKIGCPIILLRNIDPSHGLCNGTRLICKGFMRNVIDA 793
[Close]
BLAST of NO18G00140 vs. NCBI_GenBank
Match: XP_022031036.1 (ATP-dependent DNA helicase PIF6-like [Helianthus annuus])

HSP 1 Score: 108.6 bits (270), Expect = 3.000e-20
Identity = 50/100 (50.00%), Postives = 70/100 (70.00%), Query Frame = 0 
Query:  168 RAILTPKNKDGDALNDHAVQYFPGEEKVYLSADRLAQDENEGVYPTDLLNSMNPAGFAPHQLRMKVGIPIILLRNVNPAQGLANGTRLLILHISPHIIQA 268
            RAIL+ KN+  D +N+  ++ F GEEKVY S D  A+D+    YP + LNS+N +G APH+LR+K+G PIILLRN++P+ GL NGTRL+      ++I A
Sbjct:  142 RAILSTKNESVDEINNQMIEIFQGEEKVYYSFDE-AEDDQRNFYPVEFLNSLNVSGLAPHKLRLKIGCPIILLRNIDPSHGLCNGTRLICKGFMRNVIDA 240
The following BLAST results are available for this feature:
BLAST of NO18G00140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_022030317.16.100e-2146.55ATP-dependent DNA helicase PIF1-like [Helianthus a... [more]
XP_022041580.16.100e-2152.00uncharacterized protein LOC110944175 [Helianthus a... [more]
XP_022003298.16.100e-2146.55uncharacterized protein LOC110900737 [Helianthus a... [more]
XP_021991141.17.900e-2146.55ATP-dependent DNA helicase PIF1-like [Helianthus a... [more]
XP_022003700.17.900e-2145.69uncharacterized protein LOC110901163 [Helianthus a... [more]
XP_021866279.11.000e-2045.60uncharacterized protein LOC110804992 [Spinacia ole... [more]
XP_017251224.13.000e-2048.08PREDICTED: ATP-dependent DNA helicase PIF1-like [D... [more]
XP_017251225.13.000e-2048.08PREDICTED: uncharacterized protein LOC108221883 [D... [more]
XP_022033647.13.000e-2050.00uncharacterized protein LOC110935550 [Helianthus a... [more]
XP_022031036.13.000e-2050.00ATP-dependent DNA helicase PIF6-like [Helianthus a... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR050ncniR050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G00140.1NO18G00140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G00140.1NO18G00140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G00140 ID=NO18G00140|Name=NO18G00140|organism=Nannochloropsis oceanica|type=gene|length=1030bp
ATGTCAGTGACCGACGAGAATGCTCTTCTTCCTGGTCTCCCTTCTCATGA
GGAGGAGGAAGAGGAGATTGAGCTTTATCTCCTCCATCACGACGAAGAAC
AACAGGAGGAGGACGAAAACGACTTCCAAGGTTTCGACCTCGAAGTCGAG
GACGACAAGATTAATGATAACAACAGCTCCATCACCAGCGACACTGATGC
CAGTGCCATGGCCACAGCGGAAACAACTTCTGACACCGGCACCACCCGTA
CAAGAAACAAGCCCAGTAGGAAGCCTTCGGGGATTGCACTGGCCTTCGCG
AAGCCAGACGTCTCGCCGGAAGAGGCTGAGGAGTACGTCAAGAAACATCT
CATGCCAGACGCTATGCTGAGGGAGGgtaattggagaatcaaagaggcac
cgagataccatgctagtcgcagcccaatctggacatatggggttatgtac
gacaggccggccgtggggagcgtgactgcacagcggcggtggtagtgctt
ggcgacggagacttgtcgtataggcaacgtgtccatactttccggcctag
gagcggctggaaactgcaatatccatctgagaagtgtccataacatcgtc
agCGTTCGCAGTAAGTCCATGTCTGCACCCTTCGCCAGAGCTGAACTACG
ACCCCATTCGGCTTCTCGACCACTTCTACGGGGATTTCAATGACGCGCGC
AATACAACGCAGAAAACTCGTATGTATCGCGCCATCCTCACCCCCAAGAA
CAAGGACGGCGACGCCTTGAACGACCACGCCGTCCAGTATTTCCCCGGAG
AAGAAAAGGTATACCTCTCAGCAGACAGGCTAGCGCAGGACGAGAACGAG
GGTGTATACCCCACGGATCTCTTAAACTCCATGAACCCGGCCGGCTTCGC
CCCGCATCAACTTCGCATGAAAGTGGGCATACCTATCATCCTGTTGCGGA
ACGTAAACCCGGCACAAGGCCTCGCCAATGGGACACGTTTGCTCATCCTG
CATATTTCTCCTCACATCATCCAGGCTTAA
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protein sequence of NO18G00140.1

>NO18G00140.1-protein ID=NO18G00140.1-protein|Name=NO18G00140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp
MSVTDENALLPGLPSHEEEEEEIELYLLHHDEEQQEEDENDFQGFDLEVE
DDKINDNNSSITSDTDASAMATAETTSDTGTTRTRNKPSRKPSGIALAFA
KPDVSPEEAEEYVKKHLMPDAMLREAFAVSPCLHPSPELNYDPIRLLDHF
YGDFNDARNTTQKTRMYRAILTPKNKDGDALNDHAVQYFPGEEKVYLSAD
RLAQDENEGVYPTDLLNSMNPAGFAPHQLRMKVGIPIILLRNVNPAQGLA
NGTRLLILHISPHIIQA*
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Synonyms
Publications