NO17G02950, NO17G02950 (gene) Nannochloropsis oceanica

Overview
NameNO17G02950
Unique NameNO17G02950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1192
Alignment locationchr17:866589..867780 -

Link to JBrowse

Properties
Property NameValue
DescriptionEnzyme of the cupin superfamily
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:866589..867780 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011051RmlC_Cupin
IPR008579DUF861_Cupin_3
Homology
BLAST of NO17G02950 vs. NCBI_GenBank
Match: XP_005853963.1 (enzyme of the cupin superfamily [Nannochloropsis gaditana CCMP526] >EKU22397.1 enzyme of the cupin superfamily [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 167.9 bits (424), Expect = 2.400e-38
Identity = 90/148 (60.81%), Postives = 107/148 (72.30%), Query Frame = 0
Query:    8 LFLFLVLITFVAPAATFLLSTAPDSLTCCANSKNFQRQQINTF----ASISSDSSSMSEIKVVSQPDEATLTRMGVNSWPTWGCDVSKFPWSYGDAETCYILQGRVTVTPTSGGKAVTVGKGDLVTFPEGMSCVWDVTEAINKRYTFH 152
            L L LVL  F APAA+FL+   P  +T      NF  ++  T     AS + DSS+MS IKVVS+PDEATLT MGV +WP WGC+ S+FPW+YG+AETCYIL+G VTVTP S G+ VTVG GDLVTFP GMSCVW V++AINK Y FH
Sbjct:   12 LLLSLVLAGFWAPAASFLVPALPSFVT------NFDFKKRATLGGLSASTTRDSSNMSGIKVVSEPDEATLTEMGVRNWPKWGCEPSEFPWTYGEAETCYILEGSVTVTP-SNGQPVTVGAGDLVTFPAGMSCVWKVSKAINKHYKFH 152          
BLAST of NO17G02950 vs. NCBI_GenBank
Match: GAX22002.1 (uncharacterized protein FisN_6Hh248 [Fistulifera solaris])

HSP 1 Score: 145.2 bits (365), Expect = 1.700e-31
Identity = 62/94 (65.96%), Postives = 74/94 (78.72%), Query Frame = 0
Query:   57 SSSMSEIKVVSQPDEATLTRMGVNSWPTWGCDVSKFPWSYGDAETCYILQGRVTVTPTSGGKAVTVGKGDLVTFPEGMSCVWDVTEAINKRYTF 151
            S++  EI+VV QPD   L + GV SWPTWGC VSKFPW+YG++E+CY+L GRVTVTPT G ++VT GKGD VTFP GMSC WDVTEA+ K Y F
Sbjct:   40 STTQQEIEVVYQPDSGFLEKKGVFSWPTWGCGVSKFPWTYGESESCYLLNGRVTVTPTDGRQSVTFGKGDFVTFPSGMSCTWDVTEAVQKHYNF 133          
BLAST of NO17G02950 vs. NCBI_GenBank
Match: GAX09378.1 (uncharacterized protein FisN_6Lh248 [Fistulifera solaris])

HSP 1 Score: 142.1 bits (357), Expect = 1.400e-30
Identity = 61/94 (64.89%), Postives = 74/94 (78.72%), Query Frame = 0
Query:   57 SSSMSEIKVVSQPDEATLTRMGVNSWPTWGCDVSKFPWSYGDAETCYILQGRVTVTPTSGGKAVTVGKGDLVTFPEGMSCVWDVTEAINKRYTF 151
            S++  EI+VV QPD   L + GV +WPTWGC VSKFPW+Y ++E+CY+L+GRVTVTPT G K+VT GKGD VTFP GMSC WDVTEA+ K Y F
Sbjct:   39 STTQQEIEVVYQPDSDFLEKKGVFTWPTWGCGVSKFPWTYEESESCYVLKGRVTVTPTDGRKSVTFGKGDFVTFPAGMSCTWDVTEAVQKHYNF 132          
BLAST of NO17G02950 vs. NCBI_GenBank
Match: XP_005847242.1 (hypothetical protein CHLNCDRAFT_134221 [Chlorella variabilis] >EFN55140.1 hypothetical protein CHLNCDRAFT_134221 [Chlorella variabilis])

HSP 1 Score: 127.5 bits (319), Expect = 3.600e-26
Identity = 57/91 (62.64%), Postives = 65/91 (71.43%), Query Frame = 0
Query:   61 SEIKVVSQPDEATLTRMGVNSWPTWGCDVSKFPWSYGDAETCYILQGRVTVTPTSGGKAVTVGKGDLVTFPEGMSCVWDVTEAINKRYTFH 152
            S IK+ S P EA L  +GV SWPTWGC+ S FPWSY   ET Y+L+GRV VTP  GG+ V V  GDLVTFP GMSC WDV EA++K Y FH
Sbjct:    6 SGIKLDSSPSEAELKSLGVTSWPTWGCEASNFPWSYSSTETAYVLKGRVIVTP-DGGEPVEVKAGDLVTFPAGMSCTWDVKEAVHKHYKFH 95          
BLAST of NO17G02950 vs. NCBI_GenBank
Match: XP_009366892.1 (PREDICTED: uncharacterized protein LOC103956596 [Pyrus x bretschneideri])

HSP 1 Score: 125.9 bits (315), Expect = 1.000e-25
Identity = 55/101 (54.46%), Postives = 73/101 (72.28%), Query Frame = 0
Query:   54 SSDSSSMSE----IKVVSQPDEATLTRMGVNSWPTWGCDVSKFPWSYGDAETCYILQGRVTVTPTSGGKAVTVGKGDLVTFPEGMSCVWDVTEAINKRYTF 151
            S+D+ SM+     IKV   P E+ LT++GV +WP WGC  SKFPW+Y + ETCY+LQG+VTVTP    ++V +G GDLV FP+GMSC WDV+ A++K Y F
Sbjct:   50 SADADSMATQKLGIKVDRNPPESRLTQLGVRNWPKWGCPPSKFPWTYSNKETCYLLQGKVTVTPDGSNESVEIGAGDLVEFPKGMSCTWDVSVAVDKHYNF 150          
BLAST of NO17G02950 vs. NCBI_GenBank
Match: XP_008365727.1 (PREDICTED: uncharacterized protein LOC103429347 [Malus domestica])

HSP 1 Score: 125.6 bits (314), Expect = 1.400e-25
Identity = 56/118 (47.46%), Postives = 78/118 (66.10%), Query Frame = 0
Query:   37 ANSKNFQRQQINTFASISSDSSSMS----EIKVVSQPDEATLTRMGVNSWPTWGCDVSKFPWSYGDAETCYILQGRVTVTPTSGGKAVTVGKGDLVTFPEGMSCVWDVTEAINKRYTF 151
            ++S + +R  +      S+D  S++     IKV   P E+ LT++GV +WP WGC  SKFPW+Y D ETCY+LQG+V VTP    ++V +G GDLV FP+GMSC WDV+ A++K Y F
Sbjct:   30 SSSSSSRRYSVTPIIRCSADIDSVAIQKLGIKVDRNPPESRLTQLGVRNWPKWGCPPSKFPWTYSDKETCYLLQGKVKVTPDGSNESVEIGAGDLVEFPKGMSCTWDVSVAVDKHYNF 147          
BLAST of NO17G02950 vs. NCBI_GenBank
Match: XP_002951954.1 (hypothetical protein VOLCADRAFT_105278 [Volvox carteri f. nagariensis] >EFJ47059.1 hypothetical protein VOLCADRAFT_105278 [Volvox carteri f. nagariensis])

HSP 1 Score: 125.2 bits (313), Expect = 1.800e-25
Identity = 56/97 (57.73%), Postives = 70/97 (72.16%), Query Frame = 0
Query:   57 SSSMSEIKVV--SQPDEATLTRMGVNSWPTWGCDVSKFPWSYGDAETCYILQGRVTVTPTSGGKAVTVGKGDLVTFPEGMSCVWDVTEAINKRYTFH 152
            +S+ + +KVV   QP E  L   GV  WPTWGC VSKFPW+Y ++ETCYIL+G+V VTP +GG+AV +  GD+ TFP GMSC+WDV   INK Y FH
Sbjct:   23 ASTQAGMKVVVQRQPSENVLEAKGVRRWPTWGCGVSKFPWTYQESETCYILEGKVVVTP-NGGEAVEINAGDMATFPAGMSCIWDVKAPINKHYNFH 118          
BLAST of NO17G02950 vs. NCBI_GenBank
Match: WP_010960001.1 (DUF861 domain-containing protein [Methylococcus capsulatus] >AAU93024.1 conserved hypothetical protein [Methylococcus capsulatus str. Bath])

HSP 1 Score: 125.2 bits (313), Expect = 1.800e-25
Identity = 54/91 (59.34%), Postives = 64/91 (70.33%), Query Frame = 0
Query:   60 MSEIKVVSQPDEATLTRMGVNSWPTWGCDVSKFPWSYGDAETCYILQGRVTVTPTSGGKAVTVGKGDLVTFPEGMSCVWDVTEAINKRYTF 151
            M  IK+ + P E  L  +GV  WPTW C VS FPW+Y ++ETCYIL+G VTVTP  GG+ V +GKGDLVTFP GMSC WDV   + K YTF
Sbjct:    1 MPSIKIENNPPETRLGELGVRRWPTWSCGVSSFPWTYDESETCYILEGEVTVTP-QGGEPVRIGKGDLVTFPPGMSCTWDVHVPVKKHYTF 90          
BLAST of NO17G02950 vs. NCBI_GenBank
Match: KXZ41886.1 (hypothetical protein GPECTOR_252g633 [Gonium pectorale])

HSP 1 Score: 124.4 bits (311), Expect = 3.000e-25
Identity = 57/105 (54.29%), Postives = 69/105 (65.71%), Query Frame = 0
Query:   47 INTFASISSDSSSMSEIKVVSQPDEATLTRMGVNSWPTWGCDVSKFPWSYGDAETCYILQGRVTVTPTSGGKAVTVGKGDLVTFPEGMSCVWDVTEAINKRYTFH 152
            I+    + + + +  +I V  QP E  L   GV SWPTWGC VSKFPW+Y + ETC+IL+GRV VTP +GG+ V V  GDL TFP GMSC WDV   INK Y FH
Sbjct:   12 ISARLQVQASAKAAQKIFVQRQPGEDVLKAKGVRSWPTWGCGVSKFPWTYQEPETCFILEGRVVVTP-NGGEPVEVAAGDLATFPAGMSCTWDVKAPINKHYNFH 115          
BLAST of NO17G02950 vs. NCBI_GenBank
Match: XP_022156029.1 (uncharacterized protein LOC111023000 [Momordica charantia])

HSP 1 Score: 124.0 bits (310), Expect = 3.900e-25
Identity = 48/88 (54.55%), Postives = 65/88 (73.86%), Query Frame = 0
Query:   63 IKVVSQPDEATLTRMGVNSWPTWGCDVSKFPWSYGDAETCYILQGRVTVTPTSGGKAVTVGKGDLVTFPEGMSCVWDVTEAINKRYTF 151
            IK+   P E+ LT++GV  WP WGC+ SKFPW+Y D ETC++L+G+V VTP    ++V +G GDLV FP+GMSC WDV+ A++K Y F
Sbjct:   50 IKIEKNPPESKLTQLGVRQWPKWGCEPSKFPWTYSDKETCFLLEGKVKVTPAGSEESVEIGSGDLVVFPKGMSCTWDVSVAVDKHYNF 137          
The following BLAST results are available for this feature:
BLAST of NO17G02950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005853963.12.400e-3860.81enzyme of the cupin superfamily [Nannochloropsis g... [more]
GAX22002.11.700e-3165.96uncharacterized protein FisN_6Hh248 [Fistulifera s... [more]
GAX09378.11.400e-3064.89uncharacterized protein FisN_6Lh248 [Fistulifera s... [more]
XP_005847242.13.600e-2662.64hypothetical protein CHLNCDRAFT_134221 [Chlorella ... [more]
XP_009366892.11.000e-2554.46PREDICTED: uncharacterized protein LOC103956596 [P... [more]
XP_008365727.11.400e-2547.46PREDICTED: uncharacterized protein LOC103429347 [M... [more]
XP_002951954.11.800e-2557.73hypothetical protein VOLCADRAFT_105278 [Volvox car... [more]
WP_010960001.11.800e-2559.34DUF861 domain-containing protein [Methylococcus ca... [more]
KXZ41886.13.000e-2554.29hypothetical protein GPECTOR_252g633 [Gonium pecto... [more]
XP_022156029.13.900e-2554.55uncharacterized protein LOC111023000 [Momordica ch... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL159nonsL159Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR053ncniR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008454NSK008454Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G02950.1NO17G02950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606547gene_9359Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100286g3gene6361Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G02950.1NO17G02950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G02950 ID=NO17G02950|Name=NO17G02950|organism=Nannochloropsis oceanica|type=gene|length=1192bp
ATGCACCCTCGCAGCTACAGCCTCTTCCTTTTTCTTGTCCTGATCACGTT
TGTCGCTCCCGCCGCGACTTTTCTGTTGTCAACTGCGCCGGATTCCTTGA
CTTGCTGTGCGAATAGCAAGAACTTCCAACGACAACAAATTgtacgtccc
ggcctccaaccctacctcaaatcctccccctccctgtatgatcgtgacct
tcctacctccggacataaaattgtcgcgctcatccctctgcattgagtca
gtctcaaagcagtgcctttcccatgtacgcgtctcatccttctaaccctc
ttttcctccttttcatgctctctacccacaagAACACATTTGCTTCCATC
AGCAGTGACAGCAGCAGTATGAGCGAGATTAAGGTCGTTTCCCAACCTGA
CGAGGCAACCTTGACAAGAATGgtaagatcaacgggaaggatggtcggga
agatgaggaattgttgccattgtgccttcgctgagatggattacagagag
atattttcccagagaggctgcttgttcatctccaatgcatatctagccac
tgcctgccgtgtagagtgtgaatagactgatccgcaccgcaaatagcgta
atctcggtatggcttcgtcattattgattcattgactcgattttcgcttc
ccttcttcccttcctccttccctccctccattcctccctccttcccttcc
ttttctacagGGCGTCAACAGCTGGCCCACATGGGGCTGCGACGTCAGCA
AATTTCCCTGGAGCTACGGGGATGCCGAGACATGgtaaatgagtcttttt
ttctctgagtcgatggttctacgttcccttcctccttgacgcaatctcct
ccctccctcgctccctcccctcgctccctcctccccagCTACATCCTTCA
GGGCAGGGTGACGGTGACTCCCACCAGCGGGGGGAAGGCAGTTACTGTGG
GTAAAGGAGATCTGGTGACCTTCCCCGAAGGCATGAGCTGTGTCTGgtgc
gtgaggagggagggagggagggagggagggagggagggagggagggaggg
gaatagcatttggcgcattatcgcctgatgcctgcgaattcaatttgtga
aaagcttgcatcctgccccctccccccttaccctccccccgtcgaccagG
GACGTGACTGAGGCGATCAACAAGCGCTACACATTCCATTGA
back to top

protein sequence of NO17G02950.1

>NO17G02950.1-protein ID=NO17G02950.1-protein|Name=NO17G02950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MHPRSYSLFLFLVLITFVAPAATFLLSTAPDSLTCCANSKNFQRQQINTF
ASISSDSSSMSEIKVVSQPDEATLTRMGVNSWPTWGCDVSKFPWSYGDAE
TCYILQGRVTVTPTSGGKAVTVGKGDLVTFPEGMSCVWDVTEAINKRYTF
H*
back to top
Synonyms
Publications